Wall clock time and date at job start Tue Mar 31 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47353 * 2 1 4 4 C 1.50696 * 109.47555 * 120.00644 * 2 1 3 5 5 O 1.21282 * 120.00580 * 105.78161 * 4 2 1 6 6 N 1.34779 * 119.99977 * 285.78703 * 4 2 1 7 7 C 1.46970 * 120.59064 * 5.46445 * 6 4 2 8 8 C 1.53368 * 108.63704 * 235.20709 * 7 6 4 9 9 N 1.46965 * 108.63724 * 310.58045 * 8 7 6 10 10 C 1.36936 * 120.59763 * 235.20292 * 9 8 7 11 11 H 1.07994 * 120.00214 * 149.32585 * 10 9 8 12 12 C 1.38809 * 119.99381 * 329.06021 * 10 9 8 13 13 N 1.31617 * 120.00536 * 349.26150 * 12 10 9 14 14 Si 1.86804 * 119.99953 * 169.26390 * 12 10 9 15 15 H 1.48496 * 109.47181 * 89.99599 * 14 12 10 16 16 H 1.48492 * 109.47268 * 209.99904 * 14 12 10 17 17 H 1.48499 * 109.46807 * 329.99973 * 14 12 10 18 18 C 1.46969 * 118.81187 * 55.47578 * 9 8 7 19 19 C 1.46965 * 120.59636 * 185.45097 * 6 4 2 20 20 C 1.53007 * 109.46770 * 240.00305 * 2 1 3 21 21 F 1.39895 * 109.47377 * 299.99897 * 20 2 1 22 22 F 1.39901 * 109.47024 * 59.99998 * 20 2 1 23 23 F 1.39905 * 109.46852 * 179.97438 * 20 2 1 24 24 H 1.09004 * 109.47217 * 184.82847 * 1 2 3 25 25 H 1.09003 * 109.47079 * 304.82473 * 1 2 3 26 26 H 1.08998 * 109.47927 * 64.82253 * 1 2 3 27 27 H 1.09001 * 109.60378 * 115.46668 * 7 6 4 28 28 H 1.08997 * 109.75461 * 355.03844 * 7 6 4 29 29 H 1.08998 * 109.61401 * 190.83154 * 8 7 6 30 30 H 1.09003 * 109.61157 * 70.32154 * 8 7 6 31 31 H 0.96997 * 120.00158 * 180.02562 * 13 12 10 32 32 H 1.08995 * 109.60916 * 64.26451 * 18 9 8 33 33 H 1.08994 * 109.61150 * 184.78184 * 18 9 8 34 34 H 1.08997 * 109.60671 * 244.53421 * 19 6 4 35 35 H 1.08997 * 109.60580 * 5.04785 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.5039 -1.8241 1.1376 6 7 1.9577 -0.1085 2.4339 7 6 1.2818 1.1882 2.5809 8 6 2.2588 2.1801 3.2242 9 7 2.8515 1.5514 4.4130 10 6 2.7757 2.1630 5.6359 11 1 2.7370 1.5676 6.5360 12 6 2.7541 3.5485 5.7186 13 7 3.0175 4.2757 4.6536 14 14 2.3514 4.3811 7.3416 15 1 3.6036 4.6026 8.1085 16 1 1.6944 5.6865 7.0787 17 1 1.4360 3.5157 8.1280 18 6 3.5323 0.2574 4.2649 19 6 2.5503 -0.7372 3.6228 20 6 2.0399 -0.7212 -1.2494 21 9 1.5736 -2.0402 -1.2494 22 9 1.5735 -0.0616 -2.3916 23 9 3.4389 -0.7207 -1.2497 24 1 -0.3634 -1.0240 0.0865 25 1 -0.3633 0.5869 0.8436 26 1 -0.3635 0.4372 -0.9300 27 1 0.4048 1.0734 3.2179 28 1 0.9769 1.5578 1.6019 29 1 1.7236 3.0835 3.5164 30 1 3.0456 2.4320 2.5130 31 1 3.0028 5.2438 4.7116 32 1 4.4075 0.3755 3.6261 33 1 3.8382 -0.1093 5.2447 34 1 1.7636 -0.9890 4.3339 35 1 3.0856 -1.6405 3.3304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336181791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:12 Heat of formation + Delta-G solvation = -160.671411 kcal Electronic energy + Delta-G solvation = -23364.804408 eV Core-core repulsion = 19369.791607 eV Total energy + Delta-G solvation = -3995.012801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02688 -47.55453 -47.41749 -39.97829 -36.97030 -34.45267 -33.69580 -31.26954 -30.22253 -27.15866 -26.51773 -24.29207 -23.21296 -22.56107 -20.55796 -19.15163 -18.59447 -18.28749 -17.31004 -17.06955 -16.07411 -15.54095 -15.02738 -14.80689 -14.43446 -14.29338 -13.89327 -13.84256 -13.71370 -13.63295 -13.56936 -13.47368 -13.40595 -13.19568 -12.72784 -12.29965 -11.98475 -11.66501 -11.50021 -11.32457 -10.93529 -10.81629 -10.58929 -10.32018 -10.16038 -9.95126 -9.58955 -8.69369 -8.41432 -6.76728 -5.93280 -3.43046 2.53117 2.73108 3.18283 3.28736 3.36182 3.37446 3.70763 4.05748 4.09703 4.37014 4.61751 4.77476 4.90422 5.16005 5.26020 5.33279 5.43059 5.62997 5.75035 5.80134 5.82984 5.99964 6.08418 6.22420 6.32294 6.68206 6.80205 7.08431 7.38137 7.62474 7.68906 8.25018 8.29888 9.04711 9.65057 10.22641 11.14077 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033997 B = 0.004634 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.410899 B = 6041.077743 C = 6330.076781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.137 0.863 4 C 0.518 3.482 5 O -0.540 6.540 6 N -0.587 5.587 7 C 0.071 3.929 8 C 0.155 3.845 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.067 0.933 12 C 0.005 3.995 13 N -0.906 5.906 14 Si 0.907 3.093 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.130 3.870 19 C 0.097 3.903 20 C 0.473 3.527 21 F -0.170 7.170 22 F -0.184 7.184 23 F -0.176 7.176 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.024 0.976 31 H 0.256 0.744 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -6.075 -9.369 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 H 0.155 0.845 4 C 0.304 3.696 5 O -0.418 6.418 6 N -0.318 5.318 7 C -0.052 4.052 8 C 0.029 3.971 9 N -0.314 5.314 10 C -0.385 4.385 11 H 0.085 0.915 12 C -0.193 4.193 13 N -0.550 5.550 14 Si 0.737 3.263 15 H -0.212 1.212 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.003 3.997 19 C -0.027 4.027 20 C 0.419 3.581 21 F -0.151 7.151 22 F -0.165 7.165 23 F -0.158 7.158 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.473 -6.480 -9.406 12.665 hybrid contribution -0.041 0.616 0.574 0.843 sum -5.514 -5.864 -8.832 11.950 Atomic orbital electron populations 1.21915 0.89366 1.04664 1.04943 1.22619 1.01379 1.03113 0.91494 0.84499 1.19651 0.79681 0.86065 0.84203 1.90747 1.46588 1.18752 1.85744 1.47944 1.54910 1.21776 1.07195 1.22914 0.97596 0.83844 1.00881 1.21255 0.93666 0.94381 0.87826 1.43969 1.62096 1.19636 1.05701 1.19206 1.45609 0.89094 0.84638 0.91490 1.25180 0.99927 0.96901 0.97340 1.69924 1.51794 1.05032 1.28255 0.86224 0.78180 0.78822 0.83101 1.21248 1.21485 1.20371 1.21422 0.92627 0.87108 0.98504 1.22367 0.97669 0.97025 0.85645 1.19816 0.75828 0.77932 0.84562 1.93200 1.88238 1.37065 1.96647 1.93166 1.88583 1.80928 1.53866 1.93209 1.29492 1.96386 1.96688 0.90707 0.89190 0.90100 0.91236 0.90801 0.87603 0.95799 0.93361 0.95685 0.91280 0.91581 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.60 37.15 0.32 -1.21 16 2 C -0.16 -2.13 1.85 -91.77 -0.17 -2.30 16 3 H 0.14 1.58 7.20 -51.93 -0.37 1.21 16 4 C 0.52 8.62 6.69 -10.99 -0.07 8.55 16 5 O -0.54 -10.56 14.39 5.56 0.08 -10.48 16 6 N -0.59 -9.96 2.95 -172.21 -0.51 -10.46 16 7 C 0.07 1.16 5.61 -3.60 -0.02 1.14 16 8 C 0.16 3.30 5.46 -3.60 -0.02 3.28 16 9 N -0.59 -13.76 2.96 -171.77 -0.51 -14.27 16 10 C -0.26 -6.55 9.58 -15.06 -0.14 -6.69 16 11 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 12 C 0.01 0.13 5.05 -17.43 -0.09 0.05 16 13 N -0.91 -24.53 10.98 55.49 0.61 -23.92 16 14 Si 0.91 20.46 29.57 -169.99 -5.03 15.43 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.13 2.62 6.70 -3.36 -0.02 2.59 16 19 C 0.10 1.69 6.60 -3.36 -0.02 1.67 16 20 C 0.47 6.65 2.44 37.16 0.09 6.74 16 21 F -0.17 -2.61 15.67 2.25 0.04 -2.57 16 22 F -0.18 -2.30 16.71 2.25 0.04 -2.26 16 23 F -0.18 -2.81 16.75 2.25 0.04 -2.78 16 24 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 25 H 0.09 0.84 6.03 -51.93 -0.31 0.52 16 26 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.96 4.55 -51.93 -0.24 0.72 16 29 H 0.11 2.50 5.97 -51.93 -0.31 2.19 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -29.51 292.93 -5.04 -34.55 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.06 Total: -1.47 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.15 Total: 13.82 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.41 Total: -48.66 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.11 Total: -7.61 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.51 -5.04 -34.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336181791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.124 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds