Wall clock time and date at job start Tue Mar 31 2020 02:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47353 * 2 1 4 4 C 1.50696 * 109.47555 * 120.00644 * 2 1 3 5 5 O 1.21282 * 120.00580 * 105.78161 * 4 2 1 6 6 N 1.34779 * 119.99977 * 285.78703 * 4 2 1 7 7 C 1.46970 * 120.59064 * 5.46445 * 6 4 2 8 8 C 1.53368 * 108.63704 * 235.20709 * 7 6 4 9 9 N 1.46965 * 108.63724 * 310.58045 * 8 7 6 10 10 C 1.36936 * 120.59763 * 235.20292 * 9 8 7 11 11 H 1.07994 * 120.00214 * 149.32585 * 10 9 8 12 12 C 1.38809 * 119.99381 * 329.06021 * 10 9 8 13 13 N 1.31617 * 120.00536 * 349.26150 * 12 10 9 14 14 Si 1.86804 * 119.99953 * 169.26390 * 12 10 9 15 15 H 1.48496 * 109.47181 * 89.99599 * 14 12 10 16 16 H 1.48492 * 109.47268 * 209.99904 * 14 12 10 17 17 H 1.48499 * 109.46807 * 329.99973 * 14 12 10 18 18 C 1.46969 * 118.81187 * 55.47578 * 9 8 7 19 19 C 1.46965 * 120.59636 * 185.45097 * 6 4 2 20 20 C 1.53007 * 109.46770 * 240.00305 * 2 1 3 21 21 F 1.39895 * 109.47377 * 299.99897 * 20 2 1 22 22 F 1.39901 * 109.47024 * 59.99998 * 20 2 1 23 23 F 1.39905 * 109.46852 * 179.97438 * 20 2 1 24 24 H 1.09004 * 109.47217 * 184.82847 * 1 2 3 25 25 H 1.09003 * 109.47079 * 304.82473 * 1 2 3 26 26 H 1.08998 * 109.47927 * 64.82253 * 1 2 3 27 27 H 1.09001 * 109.60378 * 115.46668 * 7 6 4 28 28 H 1.08997 * 109.75461 * 355.03844 * 7 6 4 29 29 H 1.08998 * 109.61401 * 190.83154 * 8 7 6 30 30 H 1.09003 * 109.61157 * 70.32154 * 8 7 6 31 31 H 0.96997 * 120.00158 * 180.02562 * 13 12 10 32 32 H 1.08995 * 109.60916 * 64.26451 * 18 9 8 33 33 H 1.08994 * 109.61150 * 184.78184 * 18 9 8 34 34 H 1.08997 * 109.60671 * 244.53421 * 19 6 4 35 35 H 1.08997 * 109.60580 * 5.04785 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.5039 -1.8241 1.1376 6 7 1.9577 -0.1085 2.4339 7 6 1.2818 1.1882 2.5809 8 6 2.2588 2.1801 3.2242 9 7 2.8515 1.5514 4.4130 10 6 2.7757 2.1630 5.6359 11 1 2.7370 1.5676 6.5360 12 6 2.7541 3.5485 5.7186 13 7 3.0175 4.2757 4.6536 14 14 2.3514 4.3811 7.3416 15 1 3.6036 4.6026 8.1085 16 1 1.6944 5.6865 7.0787 17 1 1.4360 3.5157 8.1280 18 6 3.5323 0.2574 4.2649 19 6 2.5503 -0.7372 3.6228 20 6 2.0399 -0.7212 -1.2494 21 9 1.5736 -2.0402 -1.2494 22 9 1.5735 -0.0616 -2.3916 23 9 3.4389 -0.7207 -1.2497 24 1 -0.3634 -1.0240 0.0865 25 1 -0.3633 0.5869 0.8436 26 1 -0.3635 0.4372 -0.9300 27 1 0.4048 1.0734 3.2179 28 1 0.9769 1.5578 1.6019 29 1 1.7236 3.0835 3.5164 30 1 3.0456 2.4320 2.5130 31 1 3.0028 5.2438 4.7116 32 1 4.4075 0.3755 3.6261 33 1 3.8382 -0.1093 5.2447 34 1 1.7636 -0.9890 4.3339 35 1 3.0856 -1.6405 3.3304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336181791.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:11 Heat of formation + Delta-G solvation = -178.428671 kcal Electronic energy + Delta-G solvation = -23365.574421 eV Core-core repulsion = 19369.791607 eV Total energy + Delta-G solvation = -3995.782814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.14005 -48.64977 -48.57274 -41.33130 -38.53770 -35.84841 -35.08065 -33.01128 -31.78034 -28.79933 -27.49702 -25.87827 -24.69878 -23.96954 -22.01142 -20.53221 -19.81026 -19.45074 -18.69979 -18.38712 -17.60192 -16.99274 -16.53397 -16.29610 -15.57280 -15.48117 -15.44798 -15.23790 -15.07660 -15.02209 -14.82259 -14.76557 -14.69055 -14.38219 -14.04499 -13.36316 -13.28094 -13.01952 -12.99363 -12.70362 -12.52955 -12.42243 -12.20198 -12.00386 -11.89572 -11.67302 -10.95560 -10.59283 -9.90851 -8.61613 -7.87233 -5.40207 1.30406 1.50141 1.52080 1.54404 1.60842 1.94705 2.51509 2.62701 2.91862 2.98943 3.29209 3.49619 3.60089 3.80068 3.93051 4.20879 4.23530 4.33681 4.53468 4.60337 4.64055 4.67331 4.72687 4.80275 5.05936 5.10352 5.23485 5.49588 5.62995 5.66887 6.31877 6.39298 6.92153 7.13644 7.78999 8.32683 9.17158 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033997 B = 0.004634 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.410899 B = 6041.077743 C = 6330.076781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.159 4.159 3 H 0.156 0.844 4 C 0.517 3.483 5 O -0.571 6.571 6 N -0.591 5.591 7 C 0.087 3.913 8 C 0.159 3.841 9 N -0.609 5.609 10 C -0.265 4.265 11 H 0.068 0.932 12 C -0.042 4.042 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.269 1.269 18 C 0.131 3.869 19 C 0.107 3.893 20 C 0.471 3.529 21 F -0.179 7.179 22 F -0.172 7.172 23 F -0.191 7.191 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.001 0.999 31 H 0.252 0.748 32 H 0.010 0.990 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -6.152 -9.682 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 H 0.173 0.827 4 C 0.305 3.695 5 O -0.452 6.452 6 N -0.322 5.322 7 C -0.036 4.036 8 C 0.032 3.968 9 N -0.333 5.333 10 C -0.395 4.395 11 H 0.086 0.914 12 C -0.238 4.238 13 N -0.579 5.579 14 Si 0.797 3.203 15 H -0.217 1.217 16 H -0.217 1.217 17 H -0.194 1.194 18 C 0.005 3.995 19 C -0.017 4.017 20 C 0.417 3.583 21 F -0.161 7.161 22 F -0.154 7.154 23 F -0.173 7.173 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.984 -6.575 -9.730 13.663 hybrid contribution 0.489 0.598 0.639 1.003 sum -6.495 -5.977 -9.091 12.671 Atomic orbital electron populations 1.21999 0.86723 1.04998 1.06835 1.22694 1.03402 1.03092 0.88883 0.82667 1.20203 0.78745 0.85765 0.84833 1.90735 1.47858 1.20346 1.86230 1.47991 1.54994 1.21906 1.07305 1.22746 0.95970 0.82169 1.02695 1.21118 0.93680 0.94999 0.86975 1.44239 1.62951 1.20443 1.05637 1.19498 1.44786 0.89469 0.85701 0.91444 1.25847 1.00415 0.97477 1.00088 1.70076 1.53136 1.04836 1.29882 0.85265 0.77656 0.77680 0.79725 1.21678 1.21729 1.19408 1.21467 0.92691 0.86572 0.98813 1.22159 0.97357 0.96108 0.86112 1.19983 0.75172 0.77754 0.85399 1.93183 1.88239 1.37892 1.96741 1.93188 1.88318 1.80569 1.53301 1.93182 1.30851 1.96434 1.96808 0.91114 0.87926 0.87660 0.90259 0.86958 0.89993 0.98095 0.93829 0.97235 0.90809 0.90575 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.60 71.98 0.62 -1.83 16 2 C -0.16 -3.69 1.85 -11.54 -0.02 -3.71 16 3 H 0.16 3.07 7.20 -2.39 -0.02 3.05 16 4 C 0.52 16.24 6.69 87.66 0.59 16.82 16 5 O -0.57 -21.73 14.39 -3.03 -0.04 -21.77 16 6 N -0.59 -18.96 2.95 -817.15 -2.41 -21.37 16 7 C 0.09 2.64 5.61 86.41 0.48 3.12 16 8 C 0.16 6.68 5.46 86.41 0.47 7.16 16 9 N -0.61 -28.27 2.96 -697.36 -2.06 -30.33 16 10 C -0.26 -13.49 9.58 84.03 0.81 -12.69 16 11 H 0.07 3.36 7.85 -2.91 -0.02 3.34 16 12 C -0.04 -2.20 5.05 84.86 0.43 -1.77 16 13 N -0.93 -51.08 10.98 21.65 0.24 -50.85 16 14 Si 0.97 41.97 29.57 68.60 2.03 43.99 16 15 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 C 0.13 5.23 6.70 86.56 0.58 5.81 16 19 C 0.11 3.61 6.60 86.57 0.57 4.18 16 20 C 0.47 12.34 2.44 71.98 0.18 12.51 16 21 F -0.18 -5.23 15.67 44.97 0.70 -4.52 16 22 F -0.17 -3.87 16.71 44.97 0.75 -3.12 16 23 F -0.19 -5.91 16.75 44.97 0.75 -5.16 16 24 H 0.07 1.27 7.94 -2.38 -0.02 1.25 16 25 H 0.10 1.46 6.03 -2.39 -0.01 1.44 16 26 H 0.10 1.28 7.67 -2.39 -0.02 1.26 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.11 2.51 4.55 -2.39 -0.01 2.50 16 29 H 0.08 3.88 5.97 -2.39 -0.01 3.86 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 32 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 2.88 7.02 -2.39 -0.02 2.87 16 Total: -1.00 -63.46 292.93 5.78 -57.68 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.12 Total: 5.85 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 4.70 Total: 29.60 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -4.23 Total: -102.55 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.04 Total: -21.77 kcal Atomic # 9 Polarization: -15.01 SS G_CDS: 2.21 Total: -12.80 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -63.46 5.78 -57.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336181791.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.747 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds