Wall clock time and date at job start Tue Mar 31 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 N 1.46904 * 109.47091 * 240.00566 * 2 1 3 5 5 C 1.46897 * 110.99775 * 191.27197 * 4 2 1 6 6 C 1.53234 * 109.33920 * 187.25051 * 5 4 2 7 7 N 1.47075 * 108.52131 * 306.16740 * 6 5 4 8 8 C 1.34782 * 120.88217 * 231.18408 * 7 6 5 9 9 O 1.21687 * 119.99597 * 355.25132 * 8 7 6 10 10 C 1.46377 * 120.00096 * 175.24323 * 8 7 6 11 11 H 1.08005 * 119.99838 * 20.08573 * 10 8 7 12 12 C 1.40044 * 120.00299 * 200.08162 * 10 8 7 13 13 N 1.30669 * 120.00262 * 179.64272 * 12 10 8 14 14 Si 1.86803 * 119.99704 * 359.63899 * 12 10 8 15 15 H 1.48500 * 109.47058 * 275.17823 * 14 12 10 16 16 H 1.48498 * 109.47215 * 35.18009 * 14 12 10 17 17 H 1.48501 * 109.47061 * 155.17995 * 14 12 10 18 18 C 1.47084 * 118.24061 * 51.45863 * 7 6 5 19 19 C 1.46900 * 110.99546 * 315.56788 * 4 2 1 20 20 C 1.52996 * 109.46983 * 120.00096 * 2 1 3 21 21 F 1.39904 * 109.46997 * 185.76608 * 20 2 1 22 22 F 1.39900 * 109.47340 * 305.76365 * 20 2 1 23 23 F 1.39904 * 109.47020 * 65.76567 * 20 2 1 24 24 H 1.09001 * 109.46901 * 299.99883 * 1 2 3 25 25 H 1.09001 * 109.47300 * 59.99732 * 1 2 3 26 26 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.49668 * 67.28837 * 5 4 2 28 28 H 1.08998 * 109.49107 * 307.20866 * 5 4 2 29 29 H 1.09001 * 109.63320 * 186.45521 * 6 5 4 30 30 H 1.09003 * 109.63035 * 65.87543 * 6 5 4 31 31 H 0.97000 * 120.00376 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.62622 * 68.24912 * 18 7 6 33 33 H 1.08999 * 109.62988 * 188.83442 * 18 7 6 34 34 H 1.09001 * 109.49679 * 292.70919 * 19 4 2 35 35 H 1.09001 * 109.49451 * 52.79108 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.4632 -0.9485 -1.1071 6 6 3.9667 -1.5042 -2.4434 7 7 3.1493 -2.6735 -2.8009 8 6 3.7262 -3.8443 -3.1370 9 8 4.9370 -3.9207 -3.2317 10 6 2.8965 -5.0237 -3.3880 11 1 1.8493 -4.9067 -3.6252 12 6 3.4604 -6.3038 -3.3207 13 7 2.7181 -7.3570 -3.5380 14 14 5.2738 -6.5057 -2.9205 15 1 6.0734 -6.3699 -4.1645 16 1 5.6861 -5.4596 -1.9505 17 1 5.5037 -7.8480 -2.3285 18 6 1.6855 -2.5296 -2.7877 19 6 1.2718 -1.9352 -1.4321 20 6 2.0400 -0.7213 1.2492 21 9 3.4328 -0.6076 1.3174 22 9 1.4687 -0.1427 2.3877 23 9 1.6850 -2.0730 1.1848 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.6540 -1.6741 -0.3164 28 1 3.9839 -0.0181 -0.8807 29 1 5.0103 -1.8031 -2.3460 30 1 3.8720 -0.7413 -3.2162 31 1 3.1086 -8.2437 -3.4910 32 1 1.3759 -1.8634 -3.5929 33 1 1.2204 -3.5068 -2.9179 34 1 1.4931 -2.6471 -0.6369 35 1 0.2033 -1.7203 -1.4415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336438715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:24 Heat of formation + Delta-G solvation = -172.320882 kcal Electronic energy + Delta-G solvation = -23782.301525 eV Core-core repulsion = 19786.783565 eV Total energy + Delta-G solvation = -3995.517960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.26243 -47.72415 -47.68049 -39.32469 -37.41078 -34.51058 -32.83963 -31.48107 -30.47426 -27.44720 -26.34008 -25.40391 -23.25425 -21.87896 -20.90951 -19.20489 -18.64023 -18.49936 -17.39152 -16.54175 -16.19819 -15.47677 -15.09392 -14.93227 -14.65809 -14.44846 -14.37264 -14.12381 -13.97648 -13.87080 -13.62421 -13.48761 -13.10363 -12.66353 -12.35369 -12.27428 -12.07393 -11.87467 -11.62441 -11.45272 -10.97873 -10.84303 -10.72836 -10.62191 -10.33880 -9.44767 -9.02593 -8.56971 -7.92201 -7.50680 -6.60982 -4.83151 2.67559 3.40779 3.47384 3.50218 3.72345 3.75773 3.89872 4.14782 4.18303 4.25946 4.55610 4.68075 4.84129 5.04334 5.29926 5.32410 5.44888 5.47427 5.52375 5.65515 5.75192 5.78791 5.88967 6.06286 6.28343 6.35009 6.51108 6.74562 6.90026 7.07282 7.59948 7.86279 8.30313 8.71031 9.11809 10.00049 10.40024 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.005611 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.384726 B = 4989.331286 C = 5050.100559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.046 3.954 3 H 0.124 0.876 4 N -0.512 5.512 5 C 0.025 3.975 6 C 0.126 3.874 7 N -0.634 5.634 8 C 0.555 3.445 9 O -0.613 6.613 10 C -0.533 4.533 11 H 0.091 0.909 12 C 0.101 3.899 13 N -0.832 5.832 14 Si 0.959 3.041 15 H -0.279 1.279 16 H -0.256 1.256 17 H -0.322 1.322 18 C 0.128 3.872 19 C 0.011 3.989 20 C 0.412 3.588 21 F -0.182 7.182 22 F -0.189 7.189 23 F -0.177 7.177 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.282 0.718 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 15.053 8.408 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.065 4.065 3 H 0.141 0.859 4 N -0.235 5.235 5 C -0.103 4.103 6 C 0.001 3.999 7 N -0.369 5.369 8 C 0.364 3.636 9 O -0.504 6.504 10 C -0.568 4.568 11 H 0.109 0.891 12 C -0.117 4.117 13 N -0.462 5.462 14 Si 0.791 3.209 15 H -0.205 1.205 16 H -0.181 1.181 17 H -0.253 1.253 18 C 0.004 3.996 19 C -0.117 4.117 20 C 0.356 3.644 21 F -0.164 7.164 22 F -0.171 7.171 23 F -0.159 7.159 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.517 15.105 7.915 17.923 hybrid contribution 0.851 -0.711 1.127 1.581 sum -4.666 14.394 9.042 17.627 Atomic orbital electron populations 1.22059 0.90997 1.04282 1.04195 1.23291 0.99019 0.99939 0.84287 0.85855 1.62329 1.05000 1.25095 1.31114 1.23033 0.86754 1.00873 0.99663 1.21300 0.96812 0.88267 0.93490 1.47822 1.05239 1.11120 1.72721 1.18397 0.87093 0.82278 0.75846 1.90264 1.16346 1.82810 1.60987 1.20734 0.98083 0.88600 1.49424 0.89145 1.25724 1.01216 0.94728 0.89997 1.69530 1.38490 0.99402 1.38826 0.85403 0.81356 0.73550 0.80582 1.20473 1.18124 1.25287 1.21673 0.82185 1.01708 0.94084 1.23254 0.98372 0.89866 1.00193 1.22454 0.75890 0.78640 0.87427 1.93174 1.30807 1.95748 1.96660 1.93150 1.84615 1.84252 1.55084 1.93150 1.91597 1.34995 1.96116 0.90819 0.89304 0.90643 0.92951 0.89765 0.89165 0.92629 0.90841 0.92700 0.87749 0.91793 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.13 37.16 0.30 -1.02 16 2 C 0.05 0.49 2.89 -67.71 -0.20 0.29 16 3 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 4 N -0.51 -6.81 4.73 -226.05 -1.07 -7.88 16 5 C 0.02 0.38 4.11 -3.70 -0.02 0.36 16 6 C 0.13 2.29 6.58 -3.61 -0.02 2.27 16 7 N -0.63 -13.62 3.00 -173.84 -0.52 -14.14 16 8 C 0.55 14.74 7.29 -12.98 -0.09 14.64 16 9 O -0.61 -17.74 11.64 5.20 0.06 -17.68 16 10 C -0.53 -14.86 9.25 -35.63 -0.33 -15.19 16 11 H 0.09 2.49 6.22 -52.48 -0.33 2.16 16 12 C 0.10 2.87 5.52 -17.37 -0.10 2.77 16 13 N -0.83 -23.62 13.92 55.55 0.77 -22.84 16 14 Si 0.96 25.47 26.10 -169.99 -4.44 21.04 16 15 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 16 H -0.26 -7.18 6.28 56.52 0.35 -6.82 16 17 H -0.32 -8.13 7.11 56.52 0.40 -7.73 16 18 C 0.13 2.26 6.54 -3.36 -0.02 2.24 16 19 C 0.01 0.16 4.53 -3.46 -0.02 0.14 16 20 C 0.41 5.20 2.37 37.16 0.09 5.29 16 21 F -0.18 -2.52 13.91 2.25 0.03 -2.49 16 22 F -0.19 -2.26 16.57 2.25 0.04 -2.22 16 23 F -0.18 -2.63 13.65 2.25 0.03 -2.60 16 24 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.69 6.01 -51.93 -0.31 0.37 16 27 H 0.05 0.91 5.86 -51.93 -0.30 0.60 16 28 H 0.08 1.08 7.77 -51.93 -0.40 0.67 16 29 H 0.09 1.81 7.09 -51.93 -0.37 1.44 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.28 7.39 8.29 -40.82 -0.34 7.05 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 2.00 5.49 -51.93 -0.28 1.72 16 34 H 0.06 1.07 5.60 -51.93 -0.29 0.78 16 35 H 0.09 1.05 5.73 -51.93 -0.30 0.75 16 LS Contribution 279.52 15.07 4.21 4.21 Total: -1.00 -31.84 279.52 -5.14 -36.99 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -3.86 Total: -4.17 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -0.40 Total: 11.79 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.82 Total: -44.87 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.06 Total: -17.68 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.10 Total: -7.31 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -4.44 Total: 21.04 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.84 -5.14 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336438715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.334 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds