Wall clock time and date at job start Tue Mar 31 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 N 1.46904 * 109.47091 * 240.00566 * 2 1 3 5 5 C 1.46897 * 110.99775 * 191.27197 * 4 2 1 6 6 C 1.53234 * 109.33920 * 187.25051 * 5 4 2 7 7 N 1.47075 * 108.52131 * 306.16740 * 6 5 4 8 8 C 1.34782 * 120.88217 * 231.18408 * 7 6 5 9 9 O 1.21687 * 119.99597 * 355.25132 * 8 7 6 10 10 C 1.46377 * 120.00096 * 175.24323 * 8 7 6 11 11 H 1.08005 * 119.99838 * 20.08573 * 10 8 7 12 12 C 1.40044 * 120.00299 * 200.08162 * 10 8 7 13 13 N 1.30669 * 120.00262 * 179.64272 * 12 10 8 14 14 Si 1.86803 * 119.99704 * 359.63899 * 12 10 8 15 15 H 1.48500 * 109.47058 * 275.17823 * 14 12 10 16 16 H 1.48498 * 109.47215 * 35.18009 * 14 12 10 17 17 H 1.48501 * 109.47061 * 155.17995 * 14 12 10 18 18 C 1.47084 * 118.24061 * 51.45863 * 7 6 5 19 19 C 1.46900 * 110.99546 * 315.56788 * 4 2 1 20 20 C 1.52996 * 109.46983 * 120.00096 * 2 1 3 21 21 F 1.39904 * 109.46997 * 185.76608 * 20 2 1 22 22 F 1.39900 * 109.47340 * 305.76365 * 20 2 1 23 23 F 1.39904 * 109.47020 * 65.76567 * 20 2 1 24 24 H 1.09001 * 109.46901 * 299.99883 * 1 2 3 25 25 H 1.09001 * 109.47300 * 59.99732 * 1 2 3 26 26 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.49668 * 67.28837 * 5 4 2 28 28 H 1.08998 * 109.49107 * 307.20866 * 5 4 2 29 29 H 1.09001 * 109.63320 * 186.45521 * 6 5 4 30 30 H 1.09003 * 109.63035 * 65.87543 * 6 5 4 31 31 H 0.97000 * 120.00376 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.62622 * 68.24912 * 18 7 6 33 33 H 1.08999 * 109.62988 * 188.83442 * 18 7 6 34 34 H 1.09001 * 109.49679 * 292.70919 * 19 4 2 35 35 H 1.09001 * 109.49451 * 52.79108 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.4632 -0.9485 -1.1071 6 6 3.9667 -1.5042 -2.4434 7 7 3.1493 -2.6735 -2.8009 8 6 3.7262 -3.8443 -3.1370 9 8 4.9370 -3.9207 -3.2317 10 6 2.8965 -5.0237 -3.3880 11 1 1.8493 -4.9067 -3.6252 12 6 3.4604 -6.3038 -3.3207 13 7 2.7181 -7.3570 -3.5380 14 14 5.2738 -6.5057 -2.9205 15 1 6.0734 -6.3699 -4.1645 16 1 5.6861 -5.4596 -1.9505 17 1 5.5037 -7.8480 -2.3285 18 6 1.6855 -2.5296 -2.7877 19 6 1.2718 -1.9352 -1.4321 20 6 2.0400 -0.7213 1.2492 21 9 3.4328 -0.6076 1.3174 22 9 1.4687 -0.1427 2.3877 23 9 1.6850 -2.0730 1.1848 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.6540 -1.6741 -0.3164 28 1 3.9839 -0.0181 -0.8807 29 1 5.0103 -1.8031 -2.3460 30 1 3.8720 -0.7413 -3.2162 31 1 3.1086 -8.2437 -3.4910 32 1 1.3759 -1.8634 -3.5929 33 1 1.2204 -3.5068 -2.9179 34 1 1.4931 -2.6471 -0.6369 35 1 0.2033 -1.7203 -1.4415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336438715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:24 Heat of formation + Delta-G solvation = -195.632249 kcal Electronic energy + Delta-G solvation = -23783.312382 eV Core-core repulsion = 19786.783565 eV Total energy + Delta-G solvation = -3996.528817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.27320 -48.74891 -48.69280 -40.78311 -39.06443 -36.03811 -35.00382 -32.75732 -31.73359 -29.14482 -27.58117 -26.79981 -24.58046 -23.19360 -22.13310 -20.86205 -19.67497 -19.50233 -18.94417 -18.20102 -17.78566 -17.05117 -16.39636 -16.23006 -16.04272 -15.94396 -15.56035 -15.26598 -15.21122 -15.03957 -14.84562 -14.64195 -14.49931 -14.25763 -13.97571 -13.77637 -13.39264 -13.13027 -13.02141 -12.79038 -12.56154 -12.37776 -12.19731 -12.09830 -11.81231 -11.47032 -11.20342 -10.00992 -9.77694 -9.21237 -8.79001 -7.00245 1.29855 1.34515 1.59905 1.73507 2.06548 2.28484 2.40435 2.69774 2.78434 2.97910 3.22283 3.27629 3.79322 3.86303 4.00957 4.12058 4.26800 4.35901 4.44946 4.54372 4.70864 4.72570 4.82903 4.87303 4.92060 5.13420 5.14623 5.22243 5.66163 5.70453 5.72023 5.97467 6.21994 6.62132 7.10994 7.94372 8.26429 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.005611 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.384726 B = 4989.331286 C = 5050.100559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 H 0.154 0.846 4 N -0.506 5.506 5 C 0.035 3.965 6 C 0.122 3.878 7 N -0.635 5.635 8 C 0.550 3.450 9 O -0.643 6.643 10 C -0.549 4.549 11 H 0.087 0.913 12 C 0.069 3.931 13 N -0.852 5.852 14 Si 1.002 2.998 15 H -0.288 1.288 16 H -0.282 1.282 17 H -0.301 1.301 18 C 0.123 3.877 19 C 0.020 3.980 20 C 0.406 3.594 21 F -0.192 7.192 22 F -0.184 7.184 23 F -0.194 7.194 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.291 0.709 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 17.242 8.958 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.060 4.060 3 H 0.171 0.829 4 N -0.228 5.228 5 C -0.093 4.093 6 C -0.001 4.001 7 N -0.368 5.368 8 C 0.357 3.643 9 O -0.537 6.537 10 C -0.585 4.585 11 H 0.105 0.895 12 C -0.146 4.146 13 N -0.483 5.483 14 Si 0.834 3.166 15 H -0.215 1.215 16 H -0.209 1.209 17 H -0.230 1.230 18 C 0.000 4.000 19 C -0.108 4.108 20 C 0.350 3.650 21 F -0.174 7.174 22 F -0.166 7.166 23 F -0.176 7.176 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.645 17.312 8.482 20.391 hybrid contribution 1.141 -1.282 0.987 1.980 sum -5.504 16.030 9.469 19.414 Atomic orbital electron populations 1.22108 0.88972 1.04255 1.05951 1.23552 1.00554 1.00233 0.81635 0.82893 1.62298 1.03644 1.24012 1.32842 1.22889 0.88413 1.01384 0.96620 1.21480 0.95269 0.87388 0.96004 1.47806 1.07272 1.10601 1.71137 1.18347 0.86549 0.83686 0.75761 1.90230 1.17462 1.83838 1.62152 1.20959 0.98282 0.89422 1.49844 0.89483 1.26171 1.02979 0.95034 0.90384 1.69531 1.39236 0.99907 1.39673 0.84791 0.79079 0.73533 0.79207 1.21478 1.20925 1.23034 1.21846 0.79678 1.01547 0.96932 1.23147 1.00462 0.89993 0.97222 1.22865 0.75520 0.78094 0.88516 1.93155 1.31733 1.95720 1.96754 1.93157 1.84437 1.83999 1.55006 1.93125 1.91691 1.36544 1.96237 0.89163 0.87501 0.91513 0.95413 0.86735 0.91574 0.90456 0.89902 0.90492 0.89795 0.94096 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.13 71.98 0.59 -1.37 16 2 C 0.05 0.89 2.89 44.92 0.13 1.02 16 3 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 4 N -0.51 -11.87 4.73 -869.08 -4.11 -15.98 16 5 C 0.04 1.00 4.11 86.38 0.35 1.35 16 6 C 0.12 4.31 6.58 86.35 0.57 4.88 16 7 N -0.64 -27.10 3.00 -822.12 -2.47 -29.56 16 8 C 0.55 29.64 7.29 86.36 0.63 30.27 16 9 O -0.64 -37.96 11.64 -4.31 -0.05 -38.01 16 10 C -0.55 -31.17 9.25 24.83 0.23 -30.94 16 11 H 0.09 4.89 6.22 -2.91 -0.02 4.87 16 12 C 0.07 4.00 5.52 85.30 0.47 4.47 16 13 N -0.85 -48.56 13.92 21.83 0.30 -48.25 16 14 Si 1.00 53.22 26.10 68.60 1.79 55.01 16 15 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 16 H -0.28 -16.13 6.28 99.48 0.62 -15.50 16 17 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 18 C 0.12 4.21 6.54 86.50 0.57 4.77 16 19 C 0.02 0.53 4.53 86.54 0.39 0.92 16 20 C 0.41 9.36 2.37 71.98 0.17 9.53 16 21 F -0.19 -5.00 13.91 44.97 0.63 -4.37 16 22 F -0.18 -3.94 16.57 44.97 0.75 -3.19 16 23 F -0.19 -5.60 13.65 44.97 0.61 -4.98 16 24 H 0.09 0.89 7.67 -2.39 -0.02 0.88 16 25 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.98 6.01 -2.39 -0.01 0.97 16 27 H 0.03 0.94 5.86 -2.39 -0.01 0.92 16 28 H 0.11 2.57 7.77 -2.39 -0.02 2.55 16 29 H 0.07 2.66 7.09 -2.39 -0.02 2.65 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 31 H 0.29 15.20 8.29 -92.71 -0.77 14.43 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.08 3.23 5.49 -2.39 -0.01 3.21 16 34 H 0.04 1.34 5.60 -2.39 -0.01 1.32 16 35 H 0.12 2.51 5.73 -2.39 -0.01 2.50 16 Total: -1.00 -69.55 279.52 2.59 -66.96 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: 1.05 Total: -2.52 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 4.10 Total: 24.90 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -6.28 Total: -93.80 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.05 Total: -38.01 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 1.98 Total: -12.55 kcal Atomic # 14 Polarization: 53.22 SS G_CDS: 1.79 Total: 55.01 kcal Total: -69.55 2.59 -66.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336438715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.675 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds