Wall clock time and date at job start Tue Mar 31 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47024 * 2 1 4 4 C 1.36934 * 120.00006 * 263.48271 * 3 2 1 5 5 H 1.07995 * 120.00202 * 187.65735 * 4 3 2 6 6 C 1.38811 * 119.99760 * 7.65752 * 4 3 2 7 7 N 1.31618 * 120.00368 * 26.05128 * 6 4 3 8 8 Si 1.86806 * 120.00054 * 206.04553 * 6 4 3 9 9 H 1.48499 * 109.46822 * 84.98789 * 8 6 4 10 10 H 1.48493 * 109.47170 * 204.98904 * 8 6 4 11 11 H 1.48500 * 109.47049 * 324.99178 * 8 6 4 12 12 C 1.46502 * 119.99811 * 83.48348 * 3 2 1 13 13 H 1.08990 * 110.43881 * 359.30223 * 12 3 2 14 14 C 1.54639 * 110.48440 * 121.84318 * 12 3 2 15 15 C 1.54477 * 101.76615 * 94.00964 * 14 12 3 16 16 N 1.46765 * 105.47543 * 25.41512 * 15 14 12 17 17 C 1.46498 * 124.34932 * 162.98340 * 16 15 14 18 18 C 1.52995 * 109.46900 * 90.00218 * 17 16 15 19 19 F 1.39899 * 109.47304 * 60.00059 * 18 17 16 20 20 F 1.39903 * 109.46896 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.47450 * 299.99568 * 18 17 16 22 22 C 1.34425 * 111.29869 * 342.98415 * 16 15 14 23 23 O 1.21276 * 124.93808 * 180.44311 * 22 16 15 24 24 H 1.08992 * 109.47007 * 299.99959 * 1 2 3 25 25 H 1.09003 * 109.46619 * 60.00315 * 1 2 3 26 26 H 1.08999 * 109.46682 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47431 * 239.99287 * 2 1 3 28 28 H 1.09003 * 109.46619 * 119.99685 * 2 1 3 29 29 H 0.97001 * 120.00216 * 180.02562 * 7 6 4 30 30 H 1.08996 * 110.96404 * 212.13122 * 14 12 3 31 31 H 1.09002 * 110.96195 * 335.85100 * 14 12 3 32 32 H 1.08997 * 110.24381 * 144.41865 * 15 14 12 33 33 H 1.09002 * 110.24342 * 266.41613 * 15 14 12 34 34 H 1.09003 * 109.46787 * 210.00462 * 17 16 15 35 35 H 1.09002 * 109.47161 * 329.99770 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3735 1.9819 -1.1782 5 1 2.8482 2.9518 -1.1683 6 6 2.1232 1.3440 -2.3854 7 7 1.1423 0.4712 -2.4777 8 14 3.1786 1.7243 -3.8792 9 1 4.4005 0.8809 -3.8496 10 1 2.4083 1.4366 -5.1156 11 1 3.5659 3.1578 -3.8595 12 6 2.1268 2.1198 1.2606 13 1 1.7938 1.5013 2.0939 14 6 3.5810 2.5947 1.4862 15 6 3.5414 4.0220 0.8966 16 7 2.1410 4.4491 0.9988 17 6 1.6915 5.8397 0.8971 18 6 1.3841 6.1706 -0.5647 19 9 0.3777 5.3197 -1.0338 20 9 0.9543 7.4985 -0.6617 21 9 2.5389 5.9964 -1.3350 22 6 1.3239 3.4004 1.1978 23 8 0.1184 3.4707 1.3099 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.9677 0.0252 -3.3212 30 1 3.8232 2.6180 2.5487 31 1 4.2855 1.9662 0.9413 32 1 4.1819 4.6871 1.4757 33 1 3.8562 4.0078 -0.1468 34 1 0.7918 5.9755 1.4974 35 1 2.4756 6.5027 1.2627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336704913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:30 Heat of formation + Delta-G solvation = -168.474902 kcal Electronic energy + Delta-G solvation = -24246.322973 eV Core-core repulsion = 20250.971787 eV Total energy + Delta-G solvation = -3995.351186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.07212 -48.61081 -48.57626 -41.41770 -37.84192 -37.06773 -34.20114 -32.73639 -30.69085 -29.14891 -28.14473 -25.54016 -24.48847 -23.18353 -21.97072 -20.83325 -19.52736 -19.47217 -18.73143 -18.43492 -17.81369 -17.14498 -16.18870 -16.12500 -15.52961 -15.48135 -15.24738 -15.09714 -15.01233 -14.77900 -14.73202 -14.69242 -14.38398 -13.88853 -13.76146 -13.49178 -13.23217 -13.19798 -12.93841 -12.72700 -12.47681 -12.31700 -12.22973 -11.78322 -11.49171 -11.31866 -10.94790 -10.26949 -9.85165 -8.83375 -7.82377 -5.13153 1.38115 1.46731 1.49605 1.54331 1.88115 1.96509 2.54474 2.87571 3.01368 3.24479 3.30306 3.65183 3.70894 3.83055 4.19739 4.24028 4.28486 4.45199 4.70462 4.73534 4.78674 5.02212 5.12728 5.18054 5.28197 5.37074 5.56743 5.71167 5.80738 6.04162 6.11436 6.33645 7.16596 7.25440 7.87458 8.27525 9.20327 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.009182 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.946436 B = 3048.641612 C = 3748.210596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 N -0.582 5.582 4 C -0.249 4.249 5 H 0.085 0.915 6 C -0.049 4.049 7 N -0.914 5.914 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.307 1.307 11 H -0.279 1.279 12 C 0.135 3.865 13 H 0.098 0.902 14 C -0.129 4.129 15 C 0.104 3.896 16 N -0.617 5.617 17 C 0.092 3.908 18 C 0.421 3.579 19 F -0.201 7.201 20 F -0.182 7.182 21 F -0.189 7.189 22 C 0.505 3.495 23 O -0.572 6.572 24 H 0.013 0.987 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.244 0.756 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.794 9.367 10.096 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.303 5.303 4 C -0.378 4.378 5 H 0.103 0.897 6 C -0.244 4.244 7 N -0.561 5.561 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.234 1.234 11 H -0.204 1.204 12 C 0.024 3.976 13 H 0.116 0.884 14 C -0.168 4.168 15 C -0.017 4.017 16 N -0.351 5.351 17 C -0.033 4.033 18 C 0.365 3.635 19 F -0.183 7.183 20 F -0.164 7.164 21 F -0.170 7.170 22 C 0.293 3.707 23 O -0.449 6.449 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.096 9.351 9.980 15.408 hybrid contribution -0.436 0.202 -1.854 1.915 sum 6.661 9.553 8.126 14.200 Atomic orbital electron populations 1.22098 0.99731 0.98509 0.99143 1.20899 0.91939 0.84091 0.98854 1.44476 1.74343 1.10025 1.01460 1.19555 1.31020 1.03189 0.84041 0.89727 1.25347 0.98743 1.00794 0.99558 1.70367 1.28074 1.32786 1.24840 0.85614 0.79430 0.77779 0.79746 1.20391 1.23414 1.20431 1.21370 0.95670 0.89768 0.90810 0.88434 1.23008 0.96053 0.94850 1.02880 1.22419 0.79883 0.97411 1.01940 1.48274 1.10352 1.04810 1.71655 1.22709 1.07152 0.85544 0.87869 1.22003 0.74024 0.73854 0.93624 1.93237 1.62566 1.71575 1.90923 1.93159 1.90187 1.35953 1.97067 1.93166 1.49792 1.95082 1.78996 1.22759 0.87056 0.88237 0.72669 1.90596 1.15705 1.86904 1.51677 0.96820 0.93630 0.94361 0.91252 0.94397 0.94607 0.86821 0.88872 0.85994 0.92383 0.85782 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 9.76 71.98 0.70 -5.90 16 2 C 0.17 7.81 5.55 86.38 0.48 8.29 16 3 N -0.58 -27.01 2.52 -678.06 -1.71 -28.72 16 4 C -0.25 -12.72 8.63 84.03 0.73 -12.00 16 5 H 0.09 4.20 5.20 -2.91 -0.02 4.18 16 6 C -0.05 -2.68 4.88 84.86 0.41 -2.26 16 7 N -0.91 -52.53 8.70 21.65 0.19 -52.34 16 8 Si 0.94 44.68 29.63 68.60 2.03 46.71 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 C 0.14 5.03 3.55 44.99 0.16 5.19 16 13 H 0.10 3.40 7.94 -2.39 -0.02 3.38 16 14 C -0.13 -3.31 6.48 31.65 0.21 -3.11 16 15 C 0.10 2.59 6.35 86.83 0.55 3.14 16 16 N -0.62 -18.93 2.80 -818.00 -2.29 -21.22 16 17 C 0.09 2.27 5.91 86.38 0.51 2.78 16 18 C 0.42 13.47 3.29 71.98 0.24 13.71 16 19 F -0.20 -8.78 16.95 44.97 0.76 -8.02 16 20 F -0.18 -5.15 17.32 44.97 0.78 -4.37 16 21 F -0.19 -6.40 17.09 44.97 0.77 -5.63 16 22 C 0.51 20.27 6.74 87.90 0.59 20.86 16 23 O -0.57 -27.91 17.59 -3.02 -0.05 -27.96 16 24 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.04 2.61 6.42 -2.39 -0.02 2.59 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 3.63 5.79 -2.39 -0.01 3.61 16 28 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 29 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.57 8.07 -2.39 -0.02 2.55 16 32 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.74 6.40 -2.39 -0.02 1.72 16 34 H 0.12 2.98 7.93 -2.39 -0.02 2.96 16 35 H 0.17 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.65 299.94 6.17 -65.48 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.12 Total: 5.38 kcal Atomic # 6 Polarization: 26.12 SS G_CDS: 4.58 Total: 30.70 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -3.82 Total: -102.29 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.05 Total: -27.96 kcal Atomic # 9 Polarization: -20.33 SS G_CDS: 2.31 Total: -18.02 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.65 6.17 -65.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336704913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.995 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds