Wall clock time and date at job start Tue Mar 31 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47017 * 2 1 4 4 C 1.35900 * 117.00022 * 179.97438 * 3 2 1 5 5 C 1.38618 * 120.01988 * 0.27590 * 4 3 2 6 6 C 1.38789 * 119.87260 * 180.20465 * 5 4 3 7 7 N 1.39670 * 120.04599 * 179.79209 * 6 5 4 8 8 C 1.46499 * 119.99908 * 179.72787 * 7 6 5 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.38972 * 119.90812 * 359.52172 * 6 5 4 19 19 C 1.38119 * 120.03418 * 0.24639 * 18 6 5 20 20 C 1.38211 * 120.12635 * 359.97438 * 19 18 6 21 21 N 1.48005 * 119.95152 * 179.97438 * 20 19 18 22 22 O 1.21794 * 120.00275 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99882 * 179.97438 * 21 20 19 24 24 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47501 * 299.99864 * 1 2 3 26 26 H 1.09000 * 109.47231 * 60.00079 * 1 2 3 27 27 H 1.09002 * 109.47903 * 239.99918 * 2 1 3 28 28 H 1.09005 * 109.47278 * 119.99448 * 2 1 3 29 29 H 1.08002 * 120.06322 * 359.97438 * 5 4 3 30 30 H 0.97000 * 119.99671 * 359.72157 * 7 6 5 31 31 H 1.09002 * 109.47391 * 59.99812 * 8 7 6 32 32 H 1.09001 * 109.46813 * 299.99868 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 35 35 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.98479 * 180.27694 * 18 6 5 37 37 H 1.07995 * 119.93302 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1984 0.4264 -0.0047 6 6 5.5738 0.6118 0.0001 7 7 6.4284 -0.4930 -0.0007 8 6 7.8801 -0.2961 -0.0016 9 6 8.5792 -1.6570 -0.0031 10 6 10.0726 -1.4544 -0.0034 11 1 10.4820 -0.4550 -0.0030 12 6 10.9162 -2.5450 -0.0042 13 7 10.4177 -3.7620 -0.0041 14 14 12.7673 -2.2940 -0.0052 15 1 13.2586 -2.2279 1.3946 16 1 13.4203 -3.4288 -0.7059 17 1 13.0944 -1.0258 -0.7051 18 6 6.0996 1.8982 0.0002 19 6 5.2543 2.9906 0.0006 20 6 3.8844 2.8076 0.0004 21 7 2.9822 3.9809 0.0013 22 8 3.4470 5.1066 0.0019 23 8 1.7747 3.8206 0.0007 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.7870 -0.5722 -0.0088 30 1 6.0606 -1.3905 -0.0007 31 1 8.1717 0.2617 0.8883 32 1 8.1704 0.2622 -0.8917 33 1 8.2889 -2.2156 0.8867 34 1 8.2876 -2.2143 -0.8932 35 1 11.0111 -4.5293 -0.0043 36 1 7.1697 2.0439 -0.0005 37 1 5.6647 3.9895 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343637049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:27 Heat of formation + Delta-G solvation = -32.613607 kcal Electronic energy + Delta-G solvation = -21064.624158 eV Core-core repulsion = 17617.021100 eV Total energy + Delta-G solvation = -3447.603058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82736 -40.32348 -38.47721 -36.12200 -35.83322 -33.40222 -32.09884 -31.36941 -29.94372 -29.01381 -25.71725 -24.53654 -24.40754 -22.35735 -21.78013 -20.86217 -19.30081 -18.40549 -17.96852 -17.22184 -16.78855 -16.53764 -16.33149 -15.62480 -14.75962 -14.62735 -14.60262 -14.40048 -13.63444 -13.61488 -13.07439 -12.85123 -12.50267 -12.40197 -11.94747 -11.62075 -11.44073 -11.32437 -11.17963 -11.08790 -10.79234 -10.77485 -10.72461 -10.71497 -10.05012 -9.85469 -9.51568 -8.79665 -8.61784 -7.76235 -6.27318 -4.32143 0.30070 1.09789 1.71525 1.82930 2.74461 3.17161 3.23901 3.25862 3.38305 3.42045 4.26297 4.38864 4.63071 4.64347 4.78953 4.86808 4.95686 5.01757 5.10256 5.23148 5.37741 5.51988 5.53627 5.76855 5.82956 5.85796 5.91603 5.98697 6.21499 6.37555 6.66232 6.94169 7.05786 7.33908 7.34150 7.58156 7.70090 8.05779 8.07608 8.73192 9.34243 10.84071 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.003230 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.706841 B = 8667.739754 C = 9733.395060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.284 6.284 4 C 0.244 3.756 5 C -0.307 4.307 6 C 0.308 3.692 7 N -0.709 5.709 8 C 0.112 3.888 9 C 0.013 3.987 10 C -0.528 4.528 11 H 0.060 0.940 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.228 4.228 19 C 0.024 3.976 20 C -0.153 4.153 21 N 0.054 4.946 22 O -0.207 6.207 23 O -0.166 6.166 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.144 0.856 30 H 0.405 0.595 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.543 5.962 0.007 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.193 3.807 5 C -0.332 4.332 6 C 0.193 3.807 7 N -0.329 5.329 8 C -0.010 4.010 9 C -0.024 4.024 10 C -0.567 4.567 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.726 3.274 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.251 4.251 19 C 0.004 3.996 20 C -0.241 4.241 21 N 0.565 4.435 22 O -0.411 6.411 23 O -0.381 6.381 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.241 0.759 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.957 5.395 0.002 14.964 hybrid contribution 0.819 -0.400 0.014 0.912 sum -13.138 4.995 0.016 14.056 Atomic orbital electron populations 1.21760 0.92137 1.02817 1.04031 1.22985 0.96489 0.81322 1.01939 1.86388 1.17092 1.29853 1.86082 1.18172 0.83452 0.90918 0.88132 1.20507 0.91930 0.98213 1.22581 1.17996 0.89204 0.88657 0.84831 1.45714 1.07042 1.05969 1.74145 1.22029 0.75721 1.02587 1.00629 1.19304 0.95447 0.89582 0.98111 1.20975 0.90320 0.93049 1.52310 0.92162 1.25002 0.99403 0.95081 0.94682 1.69939 1.35482 0.97877 1.49679 0.86487 0.84645 0.77982 0.78317 1.20444 1.21052 1.19652 1.20649 1.00959 0.89546 1.13936 1.20552 0.88861 1.00895 0.89295 1.20081 0.90280 0.82662 1.31113 1.43230 1.01456 1.01931 0.96907 1.94476 1.80409 1.09864 1.56346 1.94530 0.97092 1.92685 1.53826 0.90271 0.91218 0.91210 0.91452 0.91457 0.83812 0.75943 0.92092 0.92094 0.95804 0.95793 0.92626 0.83480 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.15 0.38 -0.71 16 2 C 0.05 0.42 5.46 37.15 0.20 0.62 16 3 O -0.28 -3.68 8.14 -41.59 -0.34 -4.02 16 4 C 0.24 3.32 6.67 -39.24 -0.26 3.05 16 5 C -0.31 -3.72 8.88 -39.24 -0.35 -4.07 16 6 C 0.31 4.06 6.65 -83.81 -0.56 3.51 16 7 N -0.71 -9.97 5.73 -58.65 -0.34 -10.31 16 8 C 0.11 1.91 4.85 -4.04 -0.02 1.89 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 10 C -0.53 -13.39 9.11 -34.44 -0.31 -13.70 16 11 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 14 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C -0.23 -2.91 9.31 -39.35 -0.37 -3.28 16 19 C 0.02 0.31 9.54 -39.63 -0.38 -0.06 16 20 C -0.15 -2.25 6.87 -79.77 -0.55 -2.80 16 21 N 0.05 0.91 4.45 34.05 0.15 1.06 16 22 O -0.21 -3.49 18.44 -29.46 -0.54 -4.04 16 23 O -0.17 -2.89 17.23 -36.51 -0.63 -3.52 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.52 7.65 -51.93 -0.40 0.13 16 28 H 0.07 0.52 7.67 -51.93 -0.40 0.13 16 29 H 0.14 1.41 6.30 -52.49 -0.33 1.08 16 30 H 0.41 5.26 8.48 -40.82 -0.35 4.91 16 31 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 32 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.15 1.76 6.73 -52.49 -0.35 1.40 16 37 H 0.15 1.71 7.60 -52.49 -0.40 1.31 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -29.49 323.39 -8.26 -37.75 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.70 Total: 1.00 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.45 Total: -13.90 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.55 Total: -33.24 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.51 Total: -11.58 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.49 -8.26 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343637049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.132 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds