Wall clock time and date at job start Tue Mar 31 2020 02:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47017 * 2 1 4 4 C 1.35900 * 117.00022 * 179.97438 * 3 2 1 5 5 C 1.38618 * 120.01988 * 0.27590 * 4 3 2 6 6 C 1.38789 * 119.87260 * 180.20465 * 5 4 3 7 7 N 1.39670 * 120.04599 * 179.79209 * 6 5 4 8 8 C 1.46499 * 119.99908 * 179.72787 * 7 6 5 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.38972 * 119.90812 * 359.52172 * 6 5 4 19 19 C 1.38119 * 120.03418 * 0.24639 * 18 6 5 20 20 C 1.38211 * 120.12635 * 359.97438 * 19 18 6 21 21 N 1.48005 * 119.95152 * 179.97438 * 20 19 18 22 22 O 1.21794 * 120.00275 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99882 * 179.97438 * 21 20 19 24 24 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47501 * 299.99864 * 1 2 3 26 26 H 1.09000 * 109.47231 * 60.00079 * 1 2 3 27 27 H 1.09002 * 109.47903 * 239.99918 * 2 1 3 28 28 H 1.09005 * 109.47278 * 119.99448 * 2 1 3 29 29 H 1.08002 * 120.06322 * 359.97438 * 5 4 3 30 30 H 0.97000 * 119.99671 * 359.72157 * 7 6 5 31 31 H 1.09002 * 109.47391 * 59.99812 * 8 7 6 32 32 H 1.09001 * 109.46813 * 299.99868 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 35 35 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.98479 * 180.27694 * 18 6 5 37 37 H 1.07995 * 119.93302 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1984 0.4264 -0.0047 6 6 5.5738 0.6118 0.0001 7 7 6.4284 -0.4930 -0.0007 8 6 7.8801 -0.2961 -0.0016 9 6 8.5792 -1.6570 -0.0031 10 6 10.0726 -1.4544 -0.0034 11 1 10.4820 -0.4550 -0.0030 12 6 10.9162 -2.5450 -0.0042 13 7 10.4177 -3.7620 -0.0041 14 14 12.7673 -2.2940 -0.0052 15 1 13.2586 -2.2279 1.3946 16 1 13.4203 -3.4288 -0.7059 17 1 13.0944 -1.0258 -0.7051 18 6 6.0996 1.8982 0.0002 19 6 5.2543 2.9906 0.0006 20 6 3.8844 2.8076 0.0004 21 7 2.9822 3.9809 0.0013 22 8 3.4470 5.1066 0.0019 23 8 1.7747 3.8206 0.0007 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.7870 -0.5722 -0.0088 30 1 6.0606 -1.3905 -0.0007 31 1 8.1717 0.2617 0.8883 32 1 8.1704 0.2622 -0.8917 33 1 8.2889 -2.2156 0.8867 34 1 8.2876 -2.2143 -0.8932 35 1 11.0111 -4.5293 -0.0043 36 1 7.1697 2.0439 -0.0005 37 1 5.6647 3.9895 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343637049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:26 Heat of formation + Delta-G solvation = -48.455196 kcal Electronic energy + Delta-G solvation = -21065.311101 eV Core-core repulsion = 17617.021100 eV Total energy + Delta-G solvation = -3448.290001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.02957 -41.35345 -39.49200 -37.38926 -37.07117 -35.15169 -32.97310 -32.64329 -30.97221 -30.42137 -27.17127 -25.95224 -25.27285 -23.62497 -22.84654 -22.14321 -20.40048 -19.62773 -19.16703 -18.43455 -18.35997 -17.78624 -17.17014 -16.77429 -16.45447 -15.93951 -15.67855 -15.58595 -14.60885 -14.55863 -14.39246 -13.92461 -13.56842 -13.46773 -13.29422 -12.93247 -12.70944 -12.52821 -12.47395 -12.43524 -12.34999 -12.08848 -11.93024 -11.78353 -11.59867 -11.39557 -11.28993 -10.59405 -9.76711 -8.88415 -8.25774 -6.35924 -0.89151 0.11032 0.54466 0.67325 1.42195 1.43473 1.53361 1.87081 2.19641 2.38706 2.43724 3.10760 3.42226 3.72220 3.89983 3.93261 4.02514 4.05137 4.25534 4.34132 4.40756 4.49216 4.52376 4.80085 4.81429 4.87940 4.93821 4.96087 5.19749 5.24665 5.38199 5.49780 5.56112 5.70661 5.97173 6.05983 6.14607 6.52692 6.78219 6.80449 7.34532 8.86059 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.003230 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.706841 B = 8667.739754 C = 9733.395060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.036 3.964 3 O -0.302 6.302 4 C 0.240 3.760 5 C -0.296 4.296 6 C 0.306 3.694 7 N -0.707 5.707 8 C 0.132 3.868 9 C 0.018 3.982 10 C -0.542 4.542 11 H 0.068 0.932 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.261 1.261 18 C -0.227 4.227 19 C 0.028 3.972 20 C -0.169 4.169 21 N 0.055 4.945 22 O -0.217 6.217 23 O -0.193 6.193 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.169 0.831 30 H 0.411 0.589 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.159 0.841 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.149 6.048 0.004 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 O -0.213 6.213 4 C 0.188 3.812 5 C -0.321 4.321 6 C 0.192 3.808 7 N -0.329 5.329 8 C 0.009 3.991 9 C -0.020 4.020 10 C -0.580 4.580 11 H 0.087 0.913 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.786 3.214 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.185 1.185 18 C -0.250 4.250 19 C 0.008 3.992 20 C -0.258 4.258 21 N 0.560 4.440 22 O -0.420 6.420 23 O -0.403 6.403 24 H 0.123 0.877 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.186 0.814 30 H 0.247 0.753 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.630 5.508 -0.001 14.700 hybrid contribution 0.652 -0.472 0.016 0.805 sum -12.978 5.036 0.015 13.921 Atomic orbital electron populations 1.21801 0.91096 1.04275 1.03347 1.23344 0.97406 0.79784 1.03238 1.86396 1.16730 1.32390 1.85736 1.18299 0.84113 0.90783 0.87971 1.20662 0.91262 0.98948 1.21194 1.18091 0.89466 0.88404 0.84855 1.45423 1.05929 1.06633 1.74889 1.21585 0.76960 0.99289 1.01269 1.19136 0.94709 0.92033 0.96104 1.21500 0.92147 0.93343 1.51050 0.91332 1.25867 1.03924 0.94933 0.94622 1.70056 1.36942 0.98671 1.51257 0.85492 0.79397 0.78071 0.78398 1.20000 1.21225 1.18537 1.20798 1.01494 0.89294 1.13408 1.20717 0.88095 1.01785 0.88612 1.20399 0.90697 0.82366 1.32382 1.43507 1.01577 1.02382 0.96529 1.94448 1.80320 1.10697 1.56554 1.94516 0.97837 1.92836 1.55136 0.87693 0.91909 0.91900 0.90077 0.90086 0.81391 0.75278 0.91449 0.91469 0.97797 0.97778 0.92715 0.82391 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.30 -7.51 8.14 -71.23 -0.58 -8.09 16 4 C 0.24 6.15 6.67 22.49 0.15 6.30 16 5 C -0.30 -6.47 8.88 22.49 0.20 -6.27 16 6 C 0.31 7.33 6.65 38.20 0.25 7.58 16 7 N -0.71 -18.43 5.73 -339.47 -1.95 -20.37 16 8 C 0.13 4.24 4.85 86.38 0.42 4.66 16 9 C 0.02 0.78 5.09 29.85 0.15 0.93 16 10 C -0.54 -27.07 9.11 25.60 0.23 -26.83 16 11 H 0.07 3.23 7.74 -2.91 -0.02 3.21 16 12 C 0.01 0.27 5.46 84.66 0.46 0.74 16 13 N -0.93 -51.89 13.29 21.45 0.28 -51.60 16 14 Si 0.96 40.69 29.54 68.60 2.03 42.71 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 C -0.23 -5.27 9.31 22.42 0.21 -5.06 16 19 C 0.03 0.68 9.54 22.23 0.21 0.89 16 20 C -0.17 -4.81 6.87 36.50 0.25 -4.56 16 21 N 0.06 1.83 4.45 -46.18 -0.21 1.63 16 22 O -0.22 -7.27 18.44 18.89 0.35 -6.93 16 23 O -0.19 -6.81 17.23 25.61 0.44 -6.36 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.06 7.65 -2.39 -0.02 1.04 16 28 H 0.08 1.06 7.67 -2.38 -0.02 1.04 16 29 H 0.17 2.76 6.30 -2.91 -0.02 2.75 16 30 H 0.41 9.90 8.48 -92.71 -0.79 9.12 16 31 H 0.07 2.10 7.95 -2.39 -0.02 2.08 16 32 H 0.07 2.09 7.95 -2.39 -0.02 2.07 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.16 3.33 6.73 -2.91 -0.02 3.31 16 37 H 0.17 3.45 7.60 -2.91 -0.02 3.43 16 Total: -1.00 -62.92 323.39 4.35 -58.56 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.31 Total: 12.29 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 3.67 Total: -21.83 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.87 Total: -70.35 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.21 Total: -21.38 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -62.92 4.35 -58.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343637049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.107 kcal (2) G-P(sol) polarization free energy of solvation -62.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds