Wall clock time and date at job start Tue Mar 31 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46580 * 2 1 4 4 C 1.50697 * 109.47142 * 119.99950 * 2 1 3 5 5 H 1.08003 * 119.99905 * 120.00390 * 4 2 1 6 6 C 1.37871 * 120.00200 * 300.00148 * 4 2 1 7 7 N 1.31518 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00036 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47353 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46973 * 120.00183 * 8 6 4 11 11 H 1.48505 * 109.47088 * 239.99567 * 8 6 4 12 12 N 1.46499 * 109.47078 * 240.00405 * 2 1 3 13 13 C 1.34774 * 120.00216 * 84.99653 * 12 2 1 14 14 O 1.21589 * 120.00075 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99837 * 180.02562 * 13 12 2 16 16 C 1.46502 * 120.00131 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.46859 * 325.00066 * 16 15 13 18 18 C 1.52989 * 109.47178 * 204.99878 * 16 15 13 19 19 C 1.53000 * 117.50008 * 248.61886 * 18 16 15 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 18 16 21 21 C 1.53001 * 109.47319 * 84.99284 * 16 15 13 22 22 F 1.39896 * 109.47233 * 180.02562 * 21 16 15 23 23 F 1.39898 * 109.47445 * 300.00697 * 21 16 15 24 24 F 1.39904 * 109.46825 * 60.00248 * 21 16 15 25 25 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47098 * 299.99861 * 1 2 3 27 27 H 1.09003 * 109.47246 * 60.00018 * 1 2 3 28 28 H 0.96997 * 120.00191 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99220 * 264.99859 * 12 2 1 30 30 H 0.97003 * 120.00327 * 359.97438 * 15 13 12 31 31 H 1.09004 * 115.56709 * 34.30620 * 18 16 15 32 32 H 1.09002 * 117.49696 * 0.02562 * 19 18 16 33 33 H 1.09002 * 117.50343 * 145.02258 * 19 18 16 34 34 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 35 35 H 1.08999 * 117.52022 * 107.47599 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6037 10 1 3.1473 -0.1857 4.8160 11 1 1.1679 -1.5866 4.8165 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8583 1.1617 -2.4116 15 7 2.5958 -0.6536 -3.4577 16 6 2.7362 0.0773 -4.7196 17 1 1.9402 0.8175 -4.8012 18 6 2.6427 -0.9033 -5.8901 19 6 3.9123 -1.1511 -6.7073 20 6 2.7669 -0.3304 -7.3034 21 6 4.0936 0.7826 -4.7522 22 9 4.2274 1.4811 -5.9569 23 9 4.1790 1.6793 -3.6818 24 9 5.1153 -0.1673 -4.6474 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 2.2490 -1.6317 -1.1526 30 1 2.8265 -1.5948 -3.4142 31 1 1.9650 -1.7448 -5.7459 32 1 4.8142 -0.6156 -6.4107 33 1 4.0697 -2.1553 -7.1008 34 1 2.1707 -0.7948 -8.0889 35 1 2.9146 0.7453 -7.3992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344632693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:52 Heat of formation + Delta-G solvation = -150.812327 kcal Electronic energy + Delta-G solvation = -23017.517764 eV Core-core repulsion = 19022.932484 eV Total energy + Delta-G solvation = -3994.585279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.13294 -47.57851 -47.41690 -39.57484 -37.80559 -35.03052 -33.95107 -32.37393 -29.58136 -27.82269 -25.24326 -24.31236 -22.74217 -21.51477 -21.00435 -19.81693 -18.71572 -18.53633 -18.00202 -17.52724 -16.10474 -15.80963 -15.26020 -14.79135 -14.61949 -14.45565 -14.36406 -14.17744 -13.88378 -13.76432 -13.54972 -13.32253 -13.06758 -12.59559 -12.37554 -11.73656 -11.55370 -11.46565 -11.08814 -10.97419 -10.75329 -10.74368 -10.50379 -10.30414 -10.23070 -9.51240 -9.13290 -9.00397 -8.55262 -7.89314 -6.11800 -4.20699 2.65419 2.95726 3.24481 3.32423 3.35176 3.48951 3.71315 3.88945 4.06855 4.27930 4.33765 4.54925 4.58051 4.67977 4.96427 5.14179 5.21249 5.36793 5.42915 5.59299 5.80819 5.86617 6.44913 6.79162 6.98133 7.09262 7.20908 7.47673 7.63292 7.83496 7.99799 8.16364 8.74681 8.85647 9.24914 9.47817 10.94377 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.004200 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.291205 B = 6665.177730 C = 6756.273306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.719 5.719 13 C 0.693 3.307 14 O -0.585 6.585 15 N -0.745 5.745 16 C 0.164 3.836 17 H 0.131 0.869 18 C -0.171 4.171 19 C -0.193 4.193 20 C -0.170 4.170 21 C 0.431 3.569 22 F -0.185 7.185 23 F -0.164 7.164 24 F -0.180 7.180 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.015 0.985 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.401 0.599 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -5.273 -17.763 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.178 3.822 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.462 6.462 15 N -0.402 5.402 16 C 0.054 3.946 17 H 0.149 0.851 18 C -0.190 4.190 19 C -0.230 4.230 20 C -0.207 4.207 21 C 0.375 3.625 22 F -0.166 7.166 23 F -0.145 7.145 24 F -0.161 7.161 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.236 0.764 31 H 0.147 0.853 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.815 -4.019 -17.554 18.408 hybrid contribution 0.767 -1.256 0.904 1.728 sum 4.582 -5.276 -16.650 18.057 Atomic orbital electron populations 1.22099 0.98548 0.99041 1.00918 1.18690 0.90828 0.93807 0.78883 0.93252 1.21243 1.32371 1.13235 0.90246 0.92039 1.24878 0.94829 0.94972 0.99033 1.69914 1.35897 1.22455 1.23783 0.86382 0.78576 0.79501 0.82548 1.19768 1.20869 1.20893 1.45808 1.68774 1.13307 1.09097 1.16180 0.78572 0.85445 0.80486 1.90913 1.57033 1.14090 1.84166 1.45073 1.73234 1.13759 1.08121 1.21207 0.92657 0.95701 0.85024 0.85124 1.22402 1.03711 1.01905 0.90980 1.23676 0.93505 1.02637 1.03147 1.23227 1.01900 1.01347 0.94227 1.21453 0.89294 0.78110 0.73660 1.93109 1.96509 1.80628 1.46386 1.93297 1.96663 1.68798 1.55756 1.93070 1.63404 1.64370 1.95303 0.95545 0.89131 0.96593 0.92617 0.78204 0.76383 0.85288 0.86986 0.88084 0.88055 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.28 7.14 2.56 -69.08 -0.18 6.96 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.72 -14.89 5.07 -59.81 -0.30 -15.19 16 13 C 0.69 13.82 8.06 -86.92 -0.70 13.12 16 14 O -0.58 -14.04 14.58 5.29 0.08 -13.96 16 15 N -0.74 -10.71 5.00 -58.68 -0.29 -11.01 16 16 C 0.16 2.12 2.51 -67.93 -0.17 1.95 16 17 H 0.13 1.84 7.58 -51.93 -0.39 1.44 16 18 C -0.17 -1.59 5.85 -90.62 -0.53 -2.12 16 19 C -0.19 -1.67 9.04 -26.73 -0.24 -1.92 16 20 C -0.17 -1.39 9.72 -26.73 -0.26 -1.65 16 21 C 0.43 6.14 2.49 37.16 0.09 6.23 16 22 F -0.18 -2.36 13.63 2.25 0.03 -2.33 16 23 F -0.16 -3.01 15.68 2.25 0.04 -2.98 16 24 F -0.18 -2.44 14.36 2.25 0.03 -2.41 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.81 8.55 -40.82 -0.35 6.46 16 30 H 0.40 4.56 8.62 -40.82 -0.35 4.21 16 31 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.11 1.13 4.51 -51.93 -0.23 0.90 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.95 6.36 -51.93 -0.33 0.62 16 LS Contribution 300.04 15.07 4.52 4.52 Total: -1.00 -30.97 300.04 -6.35 -37.32 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.02 Total: 8.13 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.04 Total: 6.54 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.03 Total: -50.47 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.08 Total: -13.96 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.10 Total: -7.71 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.97 -6.35 -37.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344632693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.491 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds