Wall clock time and date at job start Tue Mar 31 2020 01:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46580 * 2 1 4 4 C 1.50697 * 109.47142 * 119.99950 * 2 1 3 5 5 H 1.08003 * 119.99905 * 120.00390 * 4 2 1 6 6 C 1.37871 * 120.00200 * 300.00148 * 4 2 1 7 7 N 1.31518 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00036 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47353 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46973 * 120.00183 * 8 6 4 11 11 H 1.48505 * 109.47088 * 239.99567 * 8 6 4 12 12 N 1.46499 * 109.47078 * 240.00405 * 2 1 3 13 13 C 1.34774 * 120.00216 * 84.99653 * 12 2 1 14 14 O 1.21589 * 120.00075 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99837 * 180.02562 * 13 12 2 16 16 C 1.46502 * 120.00131 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.46859 * 325.00066 * 16 15 13 18 18 C 1.52989 * 109.47178 * 204.99878 * 16 15 13 19 19 C 1.53000 * 117.50008 * 248.61886 * 18 16 15 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 18 16 21 21 C 1.53001 * 109.47319 * 84.99284 * 16 15 13 22 22 F 1.39896 * 109.47233 * 180.02562 * 21 16 15 23 23 F 1.39898 * 109.47445 * 300.00697 * 21 16 15 24 24 F 1.39904 * 109.46825 * 60.00248 * 21 16 15 25 25 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47098 * 299.99861 * 1 2 3 27 27 H 1.09003 * 109.47246 * 60.00018 * 1 2 3 28 28 H 0.96997 * 120.00191 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99220 * 264.99859 * 12 2 1 30 30 H 0.97003 * 120.00327 * 359.97438 * 15 13 12 31 31 H 1.09004 * 115.56709 * 34.30620 * 18 16 15 32 32 H 1.09002 * 117.49696 * 0.02562 * 19 18 16 33 33 H 1.09002 * 117.50343 * 145.02258 * 19 18 16 34 34 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 35 35 H 1.08999 * 117.52022 * 107.47599 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6037 10 1 3.1473 -0.1857 4.8160 11 1 1.1679 -1.5866 4.8165 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8583 1.1617 -2.4116 15 7 2.5958 -0.6536 -3.4577 16 6 2.7362 0.0773 -4.7196 17 1 1.9402 0.8175 -4.8012 18 6 2.6427 -0.9033 -5.8901 19 6 3.9123 -1.1511 -6.7073 20 6 2.7669 -0.3304 -7.3034 21 6 4.0936 0.7826 -4.7522 22 9 4.2274 1.4811 -5.9569 23 9 4.1790 1.6793 -3.6818 24 9 5.1153 -0.1673 -4.6474 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 2.2490 -1.6317 -1.1526 30 1 2.8265 -1.5948 -3.4142 31 1 1.9650 -1.7448 -5.7459 32 1 4.8142 -0.6156 -6.4107 33 1 4.0697 -2.1553 -7.1008 34 1 2.1707 -0.7948 -8.0889 35 1 2.9146 0.7453 -7.3992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344632693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:51 Heat of formation + Delta-G solvation = -172.017941 kcal Electronic energy + Delta-G solvation = -23018.437308 eV Core-core repulsion = 19022.932484 eV Total energy + Delta-G solvation = -3995.504824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.29577 -48.69976 -48.68747 -41.08808 -38.78075 -36.80647 -35.34689 -34.28275 -31.23112 -29.29406 -27.31401 -25.41449 -23.47849 -23.14438 -22.03422 -21.49977 -20.02715 -19.75462 -19.41797 -18.77617 -17.85871 -17.19947 -16.70518 -16.16169 -16.07285 -15.64997 -15.51726 -15.39986 -15.11827 -15.10066 -14.96002 -14.80033 -14.37841 -14.17085 -13.88159 -13.52357 -12.98292 -12.87047 -12.70437 -12.44970 -12.25434 -12.16033 -12.10689 -11.55870 -11.27724 -11.14696 -11.07307 -10.60816 -10.47660 -9.67168 -8.16208 -6.33183 1.42403 1.45831 1.48706 1.59049 1.70217 2.23592 2.42391 2.65238 2.90181 2.91901 3.12480 3.14898 3.42997 3.61151 3.87648 3.99750 4.29030 4.35135 4.76828 4.81471 4.96176 4.97448 5.09415 5.12523 5.22705 5.24045 5.41506 5.61391 5.66815 5.85114 6.12001 6.22374 6.75029 7.24069 7.35431 7.69472 8.90557 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.004200 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.291205 B = 6665.177730 C = 6756.273306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.287 3.713 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.715 5.715 13 C 0.694 3.306 14 O -0.629 6.629 15 N -0.723 5.723 16 C 0.165 3.835 17 H 0.118 0.882 18 C -0.172 4.172 19 C -0.190 4.190 20 C -0.162 4.162 21 C 0.429 3.571 22 F -0.175 7.175 23 F -0.193 7.193 24 F -0.175 7.175 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.013 0.987 28 H 0.265 0.735 29 H 0.403 0.597 30 H 0.420 0.580 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 -7.718 -18.806 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.184 3.816 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.368 5.368 13 C 0.393 3.607 14 O -0.509 6.509 15 N -0.380 5.380 16 C 0.055 3.945 17 H 0.136 0.864 18 C -0.191 4.191 19 C -0.227 4.227 20 C -0.199 4.199 21 C 0.373 3.627 22 F -0.157 7.157 23 F -0.175 7.175 24 F -0.156 7.156 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.238 0.762 30 H 0.258 0.742 31 H 0.169 0.831 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.325 -6.529 -18.654 20.231 hybrid contribution 0.661 -0.445 1.124 1.378 sum 4.985 -6.975 -17.530 19.514 Atomic orbital electron populations 1.21904 0.98183 0.99512 0.99569 1.18260 0.91053 0.91593 0.80743 0.98492 1.21560 1.32496 1.13555 0.90682 0.90819 1.25787 0.94899 0.95595 1.02283 1.70063 1.37025 1.23945 1.24541 0.85280 0.78070 0.78468 0.78382 1.18362 1.21156 1.20349 1.45400 1.69058 1.13980 1.08340 1.16282 0.78272 0.84864 0.81248 1.90888 1.58777 1.16251 1.85010 1.44748 1.71669 1.14473 1.07158 1.21377 0.91329 0.96331 0.85454 0.86448 1.22391 1.05041 1.01772 0.89849 1.23703 0.92578 1.03713 1.02688 1.23328 1.01714 1.01056 0.93852 1.21661 0.90057 0.77856 0.73175 1.93127 1.96525 1.80512 1.45537 1.93244 1.96851 1.69985 1.57388 1.93084 1.63275 1.63931 1.95316 0.93947 0.91552 0.96814 0.92560 0.76156 0.74182 0.83138 0.88591 0.85888 0.85659 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.29 14.94 2.56 44.25 0.11 15.05 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.19 16 4 C -0.54 -28.73 8.73 25.60 0.22 -28.50 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.43 16 8 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 12 N -0.72 -29.42 5.07 -461.41 -2.34 -31.76 16 13 C 0.69 27.66 8.06 179.05 1.44 29.10 16 14 O -0.63 -31.08 14.58 -4.00 -0.06 -31.14 16 15 N -0.72 -19.89 5.00 -457.82 -2.29 -22.18 16 16 C 0.16 4.07 2.51 44.99 0.11 4.19 16 17 H 0.12 3.29 7.58 -2.39 -0.02 3.27 16 18 C -0.17 -2.72 5.85 -10.80 -0.06 -2.78 16 19 C -0.19 -2.73 9.04 30.59 0.28 -2.46 16 20 C -0.16 -2.20 9.72 30.60 0.30 -1.90 16 21 C 0.43 12.00 2.49 71.98 0.18 12.18 16 22 F -0.18 -4.37 13.63 44.97 0.61 -3.76 16 23 F -0.19 -7.26 15.68 44.97 0.70 -6.56 16 24 F -0.17 -4.53 14.36 44.97 0.65 -3.89 16 25 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 27 H 0.01 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.40 13.62 8.55 -92.71 -0.79 12.83 16 30 H 0.42 8.50 8.62 -92.71 -0.80 7.70 16 31 H 0.15 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.10 1.73 4.51 -2.39 -0.01 1.72 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.55 6.36 -2.39 -0.02 1.54 16 Total: -1.00 -68.54 300.04 2.81 -65.73 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.44 Total: 21.97 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 3.70 Total: 20.07 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.39 Total: -106.37 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.06 Total: -31.14 kcal Atomic # 9 Polarization: -16.17 SS G_CDS: 1.96 Total: -14.20 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -68.54 2.81 -65.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344632693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.286 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds