Wall clock time and date at job start Tue Mar 31 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47073 * 2 1 4 4 C 1.37095 * 120.00144 * 263.55358 * 3 2 1 5 5 H 1.07996 * 120.00338 * 188.38996 * 4 3 2 6 6 C 1.38952 * 120.00219 * 8.39944 * 4 3 2 7 7 N 1.31418 * 119.99620 * 25.15492 * 6 4 3 8 8 Si 1.86799 * 120.00188 * 205.16045 * 6 4 3 9 9 H 1.48506 * 109.46843 * 84.98593 * 8 6 4 10 10 H 1.48497 * 109.46919 * 204.98097 * 8 6 4 11 11 H 1.48499 * 109.47044 * 324.98505 * 8 6 4 12 12 C 1.34775 * 119.99911 * 83.55961 * 3 2 1 13 13 O 1.21289 * 119.99919 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99862 * 0.02562 * 12 3 2 15 15 N 1.46500 * 109.47126 * 179.97438 * 14 12 3 16 16 C 1.34778 * 120.00403 * 179.97438 * 15 14 12 17 17 O 1.21620 * 119.99562 * 0.02562 * 16 15 14 18 18 C 1.47377 * 120.00322 * 180.02562 * 16 15 14 19 19 C 1.47019 * 127.19043 * 0.29230 * 18 16 15 20 20 C 1.34181 * 105.95434 * 180.09576 * 19 18 16 21 21 O 1.34220 * 109.11971 * 359.65648 * 20 19 18 22 22 C 1.33650 * 110.91059 * 0.23159 * 21 20 19 23 23 C 1.50696 * 125.80115 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47643 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47144 * 300.00436 * 1 2 3 26 26 H 1.09004 * 109.46926 * 59.99465 * 1 2 3 27 27 H 1.08999 * 109.46578 * 240.00070 * 2 1 3 28 28 H 1.08992 * 109.46562 * 120.00400 * 2 1 3 29 29 H 0.97001 * 119.99394 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47693 * 60.00044 * 14 12 3 31 31 H 1.09001 * 109.47174 * 299.99761 * 14 12 3 32 32 H 0.97002 * 120.00017 * 0.02562 * 15 14 12 33 33 H 1.07998 * 127.02399 * 0.02562 * 19 18 16 34 34 H 1.07991 * 125.44018 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47389 * 0.02562 * 23 22 21 36 36 H 1.09002 * 109.47013 * 120.01986 * 23 22 21 37 37 H 1.09002 * 109.47429 * 240.02541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9477 -1.1694 6 6 2.1067 1.3521 -2.3889 7 7 1.1282 0.4789 -2.4731 8 14 3.1403 1.7449 -3.8945 9 1 4.3645 0.9042 -3.8875 10 1 2.3536 1.4634 -5.1221 11 1 3.5245 3.1791 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5242 3.2035 1.1599 14 6 1.7309 1.3983 2.4567 15 7 1.9309 2.3373 3.5633 16 6 1.6468 1.9613 4.8260 17 8 1.2248 0.8422 5.0468 18 6 1.8475 2.9061 5.9391 19 6 2.3400 4.2886 5.8534 20 6 2.3582 4.7524 7.1124 21 8 1.9200 3.7918 7.9411 22 6 1.6099 2.6823 7.2637 23 6 1.0870 1.4016 7.8614 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 0.9424 0.0387 -3.3173 30 1 2.3500 0.5151 2.6138 31 1 0.6822 1.1041 2.4145 32 1 2.2671 3.2300 3.3872 33 1 2.6294 4.8217 4.9598 34 1 2.6702 5.7423 7.4106 35 1 0.9974 1.5149 8.9418 36 1 0.1086 1.1756 7.4375 37 1 1.7768 0.5879 7.6374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352968024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:54 Heat of formation + Delta-G solvation = -46.084220 kcal Electronic energy + Delta-G solvation = -21669.422710 eV Core-core repulsion = 18221.235523 eV Total energy + Delta-G solvation = -3448.187187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -42.60702 -39.39417 -38.31369 -35.34406 -33.93242 -33.01956 -31.97914 -31.83323 -29.50587 -28.09540 -26.62968 -24.63176 -22.97219 -22.20219 -21.00625 -19.81539 -19.08105 -17.93947 -16.90485 -16.40107 -16.18974 -15.61921 -15.30286 -15.08279 -14.55650 -14.32915 -13.92778 -13.75153 -13.23735 -13.12922 -13.00194 -12.87034 -12.82119 -12.39764 -12.08693 -11.83722 -11.75470 -11.29839 -11.10398 -10.82545 -10.39643 -10.23092 -9.93150 -9.85075 -9.81338 -8.98727 -8.80721 -8.56716 -8.52861 -7.86799 -6.44615 -3.86672 1.37134 2.02109 2.73293 3.10566 3.22263 3.25735 3.48841 3.52790 3.74775 4.08343 4.45383 4.80464 4.83324 4.89856 4.99636 5.18467 5.47630 5.49644 5.55115 5.62716 5.74370 5.90355 5.95387 6.06186 6.17645 6.24464 6.53396 6.57457 6.66944 6.77563 6.95045 7.20705 7.40536 7.67695 7.88356 7.97897 8.39553 8.50224 9.06561 9.33009 9.84396 10.55559 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.003700 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.985254 B = 7565.342310 C = 8239.609448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 N -0.429 5.429 4 C -0.311 4.311 5 H 0.106 0.894 6 C 0.033 3.967 7 N -0.861 5.861 8 Si 0.922 3.078 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.428 3.572 13 O -0.596 6.596 14 C 0.111 3.889 15 N -0.701 5.701 16 C 0.585 3.415 17 O -0.552 6.552 18 C -0.240 4.240 19 C -0.183 4.183 20 C -0.045 4.045 21 O -0.178 6.178 22 C 0.071 3.929 23 C -0.071 4.071 24 H 0.041 0.959 25 H 0.025 0.975 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.269 0.731 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.410 0.590 33 H 0.160 0.840 34 H 0.207 0.793 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 1.730 14.843 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.009 4.009 3 N -0.146 5.146 4 C -0.438 4.438 5 H 0.124 0.876 6 C -0.171 4.171 7 N -0.500 5.500 8 Si 0.748 3.252 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.216 3.784 13 O -0.483 6.483 14 C -0.016 4.016 15 N -0.354 5.354 16 C 0.373 3.627 17 O -0.432 6.432 18 C -0.244 4.244 19 C -0.202 4.202 20 C -0.110 4.110 21 O -0.075 6.075 22 C 0.018 3.982 23 C -0.127 4.127 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.248 0.752 33 H 0.177 0.823 34 H 0.224 0.776 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.000 1.392 15.070 15.134 hybrid contribution 0.587 0.613 -1.224 1.490 sum 0.587 2.005 13.846 14.002 Atomic orbital electron populations 1.22116 0.96376 1.00169 1.02076 1.21548 0.94788 0.83382 1.01160 1.43770 1.54244 1.11277 1.05340 1.19745 1.36399 1.05751 0.81943 0.87605 1.25234 0.95837 0.96983 0.99052 1.70121 1.24590 1.28354 1.26893 0.86014 0.79889 0.79252 0.80015 1.20262 1.21049 1.19433 1.19740 0.86502 0.87087 0.85076 1.90477 1.53010 1.18389 1.86408 1.21093 1.02439 0.92249 0.85841 1.45549 1.66099 1.18427 1.05286 1.17147 0.77617 0.86028 0.81898 1.90750 1.47046 1.20826 1.84594 1.21197 1.13242 0.96186 0.93791 1.22999 1.04532 0.94073 0.98645 1.23818 1.04740 0.93936 0.88549 1.83751 1.64760 1.20290 1.38678 1.22775 0.97511 0.88131 0.89746 1.20446 1.02720 0.89096 1.00466 0.94031 0.95610 0.88947 0.87764 0.94595 0.92069 0.90086 0.89524 0.75184 0.82270 0.77596 0.90779 0.88604 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.64 37.16 0.36 -2.73 16 2 C 0.11 2.51 5.07 -4.04 -0.02 2.49 16 3 N -0.43 -10.65 2.64 -114.82 -0.30 -10.96 16 4 C -0.31 -8.35 9.43 -14.93 -0.14 -8.50 16 5 H 0.11 3.01 7.31 -52.49 -0.38 2.62 16 6 C 0.03 0.82 4.90 -17.46 -0.09 0.74 16 7 N -0.86 -21.37 8.65 55.50 0.48 -20.89 16 8 Si 0.92 19.88 29.62 -169.99 -5.04 14.85 16 9 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.43 10.22 7.65 -10.99 -0.08 10.14 16 13 O -0.60 -15.70 15.26 5.55 0.08 -15.61 16 14 C 0.11 2.20 4.76 -5.19 -0.02 2.18 16 15 N -0.70 -12.82 5.52 -62.58 -0.35 -13.17 16 16 C 0.59 10.25 7.81 -12.54 -0.10 10.16 16 17 O -0.55 -10.59 15.66 5.26 0.08 -10.51 16 18 C -0.24 -3.54 6.31 -103.28 -0.65 -4.20 16 19 C -0.18 -2.25 10.60 -37.45 -0.40 -2.65 16 20 C -0.04 -0.45 12.03 29.30 0.35 -0.10 16 21 O -0.18 -2.09 10.52 7.64 0.08 -2.01 16 22 C 0.07 0.92 7.37 -34.97 -0.26 0.66 16 23 C -0.07 -0.74 9.14 36.00 0.33 -0.41 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.50 6.45 -51.93 -0.34 0.17 16 26 H 0.09 2.17 6.38 -51.93 -0.33 1.84 16 27 H 0.10 2.44 5.83 -51.93 -0.30 2.14 16 28 H 0.04 0.69 6.71 -51.93 -0.35 0.35 16 29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 30 H 0.08 1.54 7.42 -51.93 -0.39 1.16 16 31 H 0.09 1.70 6.41 -51.93 -0.33 1.37 16 32 H 0.41 7.39 6.61 -40.82 -0.27 7.12 16 33 H 0.16 1.77 7.74 -52.49 -0.41 1.36 16 34 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -30.61 313.58 -5.29 -35.90 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.34 Total: 9.90 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.72 Total: 7.78 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.17 Total: -45.02 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.25 Total: -28.13 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.04 Total: 14.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.61 -5.29 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352968024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.182 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds