Wall clock time and date at job start Tue Mar 31 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47073 * 2 1 4 4 C 1.37095 * 120.00144 * 263.55358 * 3 2 1 5 5 H 1.07996 * 120.00338 * 188.38996 * 4 3 2 6 6 C 1.38952 * 120.00219 * 8.39944 * 4 3 2 7 7 N 1.31418 * 119.99620 * 25.15492 * 6 4 3 8 8 Si 1.86799 * 120.00188 * 205.16045 * 6 4 3 9 9 H 1.48506 * 109.46843 * 84.98593 * 8 6 4 10 10 H 1.48497 * 109.46919 * 204.98097 * 8 6 4 11 11 H 1.48499 * 109.47044 * 324.98505 * 8 6 4 12 12 C 1.34775 * 119.99911 * 83.55961 * 3 2 1 13 13 O 1.21289 * 119.99919 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99862 * 0.02562 * 12 3 2 15 15 N 1.46500 * 109.47126 * 179.97438 * 14 12 3 16 16 C 1.34778 * 120.00403 * 179.97438 * 15 14 12 17 17 O 1.21620 * 119.99562 * 0.02562 * 16 15 14 18 18 C 1.47377 * 120.00322 * 180.02562 * 16 15 14 19 19 C 1.47019 * 127.19043 * 0.29230 * 18 16 15 20 20 C 1.34181 * 105.95434 * 180.09576 * 19 18 16 21 21 O 1.34220 * 109.11971 * 359.65648 * 20 19 18 22 22 C 1.33650 * 110.91059 * 0.23159 * 21 20 19 23 23 C 1.50696 * 125.80115 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47643 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47144 * 300.00436 * 1 2 3 26 26 H 1.09004 * 109.46926 * 59.99465 * 1 2 3 27 27 H 1.08999 * 109.46578 * 240.00070 * 2 1 3 28 28 H 1.08992 * 109.46562 * 120.00400 * 2 1 3 29 29 H 0.97001 * 119.99394 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47693 * 60.00044 * 14 12 3 31 31 H 1.09001 * 109.47174 * 299.99761 * 14 12 3 32 32 H 0.97002 * 120.00017 * 0.02562 * 15 14 12 33 33 H 1.07998 * 127.02399 * 0.02562 * 19 18 16 34 34 H 1.07991 * 125.44018 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47389 * 0.02562 * 23 22 21 36 36 H 1.09002 * 109.47013 * 120.01986 * 23 22 21 37 37 H 1.09002 * 109.47429 * 240.02541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8580 2.9477 -1.1694 6 6 2.1067 1.3521 -2.3889 7 7 1.1282 0.4789 -2.4731 8 14 3.1403 1.7449 -3.8945 9 1 4.3645 0.9042 -3.8875 10 1 2.3536 1.4634 -5.1221 11 1 3.5245 3.1791 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5242 3.2035 1.1599 14 6 1.7309 1.3983 2.4567 15 7 1.9309 2.3373 3.5633 16 6 1.6468 1.9613 4.8260 17 8 1.2248 0.8422 5.0468 18 6 1.8475 2.9061 5.9391 19 6 2.3400 4.2886 5.8534 20 6 2.3582 4.7524 7.1124 21 8 1.9200 3.7918 7.9411 22 6 1.6099 2.6823 7.2637 23 6 1.0870 1.4016 7.8614 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 0.9424 0.0387 -3.3173 30 1 2.3500 0.5151 2.6138 31 1 0.6822 1.1041 2.4145 32 1 2.2671 3.2300 3.3872 33 1 2.6294 4.8217 4.9598 34 1 2.6702 5.7423 7.4106 35 1 0.9974 1.5149 8.9418 36 1 0.1086 1.1756 7.4375 37 1 1.7768 0.5879 7.6374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352968024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:53 Heat of formation + Delta-G solvation = -66.429357 kcal Electronic energy + Delta-G solvation = -21670.304941 eV Core-core repulsion = 18221.235523 eV Total energy + Delta-G solvation = -3449.069419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.54190 -41.00047 -39.95553 -37.20424 -35.46705 -34.08245 -33.80269 -32.78263 -31.29815 -29.59644 -27.72695 -26.40786 -24.25385 -23.85642 -22.07274 -21.23002 -20.62216 -19.12164 -18.77904 -17.78982 -17.36602 -17.01185 -16.82394 -16.66005 -16.13796 -15.86178 -15.48298 -15.24218 -14.61454 -14.46072 -14.09960 -14.04766 -13.90008 -13.80278 -13.71930 -13.54467 -13.09500 -12.83365 -12.68716 -12.64301 -12.14080 -12.08078 -11.71636 -11.19666 -10.88049 -10.86818 -10.49090 -10.20301 -9.78415 -9.53709 -8.37590 -5.88248 0.30843 1.10674 1.35528 1.44750 1.54518 1.79902 1.88949 2.10996 2.27352 2.33169 2.99343 3.05892 3.61275 3.72438 3.84721 3.90923 4.25220 4.32366 4.37916 4.50297 4.65501 4.65785 4.76496 4.83846 4.85813 4.87100 5.09024 5.20700 5.24986 5.36002 5.40084 5.45979 5.86474 6.00532 6.03055 6.44619 6.50698 7.09309 7.12008 7.41792 7.93375 8.60696 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.003700 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.985254 B = 7565.342310 C = 8239.609448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.114 3.886 3 N -0.438 5.438 4 C -0.354 4.354 5 H 0.078 0.922 6 C 0.008 3.992 7 N -0.864 5.864 8 Si 0.984 3.016 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.419 3.581 13 O -0.630 6.630 14 C 0.126 3.874 15 N -0.704 5.704 16 C 0.585 3.415 17 O -0.573 6.573 18 C -0.275 4.275 19 C -0.207 4.207 20 C -0.022 4.022 21 O -0.176 6.176 22 C 0.076 3.924 23 C -0.071 4.071 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.276 0.724 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.411 0.589 33 H 0.164 0.836 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 1.577 15.947 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.008 4.008 3 N -0.155 5.155 4 C -0.481 4.481 5 H 0.096 0.904 6 C -0.196 4.196 7 N -0.501 5.501 8 Si 0.808 3.192 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.208 3.792 13 O -0.519 6.519 14 C -0.001 4.001 15 N -0.357 5.357 16 C 0.375 3.625 17 O -0.455 6.455 18 C -0.279 4.279 19 C -0.227 4.227 20 C -0.087 4.087 21 O -0.072 6.072 22 C 0.023 3.977 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.249 0.751 33 H 0.181 0.819 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.039 1.214 16.183 16.229 hybrid contribution 0.541 0.678 -1.543 1.770 sum 0.580 1.892 14.640 14.773 Atomic orbital electron populations 1.21972 0.95415 1.01489 1.00824 1.21627 0.95532 0.82006 1.01657 1.43966 1.54176 1.12276 1.05128 1.19632 1.38837 1.05967 0.83659 0.90433 1.25900 0.96155 0.96638 1.00881 1.70189 1.24189 1.27887 1.27842 0.85103 0.78568 0.78543 0.77011 1.19490 1.19814 1.20263 1.20367 0.85802 0.86883 0.86125 1.90439 1.54358 1.19936 1.87131 1.20872 1.02595 0.92375 0.84280 1.45563 1.66634 1.18204 1.05344 1.17518 0.76715 0.86238 0.82003 1.90720 1.48095 1.21866 1.84859 1.21169 1.15871 0.97179 0.93721 1.23146 1.06049 0.93365 1.00092 1.24636 1.01949 0.94676 0.87435 1.83798 1.64447 1.20212 1.38711 1.23133 0.96319 0.88999 0.89276 1.20526 1.02080 0.87846 1.02270 0.91361 0.95033 0.91904 0.89328 0.91894 0.91390 0.89052 0.89138 0.75140 0.81866 0.73130 0.87791 0.89073 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 9.64 71.98 0.69 -4.95 16 2 C 0.11 4.97 5.07 86.38 0.44 5.41 16 3 N -0.44 -22.17 2.64 -635.56 -1.68 -23.84 16 4 C -0.35 -19.52 9.43 84.04 0.79 -18.72 16 5 H 0.08 4.63 7.31 -2.91 -0.02 4.61 16 6 C 0.01 0.42 4.90 84.93 0.42 0.83 16 7 N -0.86 -42.58 8.65 21.66 0.19 -42.39 16 8 Si 0.98 40.72 29.62 68.60 2.03 42.75 16 9 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 C 0.42 20.45 7.65 87.66 0.67 21.12 16 13 O -0.63 -34.33 15.26 -3.06 -0.05 -34.37 16 14 C 0.13 5.01 4.76 85.63 0.41 5.42 16 15 N -0.70 -26.07 5.52 -470.14 -2.60 -28.67 16 16 C 0.59 20.53 7.81 86.65 0.68 21.21 16 17 O -0.57 -21.93 15.66 -4.09 -0.06 -22.00 16 18 C -0.27 -7.98 6.31 -18.99 -0.12 -8.10 16 19 C -0.21 -4.86 10.60 23.65 0.25 -4.61 16 20 C -0.02 -0.38 12.03 66.89 0.80 0.42 16 21 O -0.18 -3.65 10.52 4.44 0.05 -3.61 16 22 C 0.08 1.85 7.37 25.26 0.19 2.04 16 23 C -0.07 -1.37 9.14 71.23 0.65 -0.72 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.03 1.21 6.45 -2.39 -0.02 1.19 16 26 H 0.06 2.94 6.38 -2.38 -0.02 2.93 16 27 H 0.09 4.12 5.83 -2.39 -0.01 4.11 16 28 H 0.06 2.36 6.71 -2.39 -0.02 2.35 16 29 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 30 H 0.09 3.43 7.42 -2.39 -0.02 3.41 16 31 H 0.09 3.52 6.41 -2.39 -0.02 3.51 16 32 H 0.41 15.17 6.61 -92.71 -0.61 14.56 16 33 H 0.16 3.57 7.74 -2.91 -0.02 3.55 16 34 H 0.25 1.80 8.06 -2.91 -0.02 1.77 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 Total: -1.00 -67.03 313.58 4.25 -62.78 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.50 Total: 29.99 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 5.87 Total: 19.36 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -4.09 Total: -94.90 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -0.06 Total: -59.98 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -67.03 4.25 -62.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352968024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.649 kcal (2) G-P(sol) polarization free energy of solvation -67.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds