Wall clock time and date at job start Tue Mar 31 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09004 * 109.47090 * 305.53495 * 3 2 1 5 5 C 1.50694 * 109.47097 * 185.53824 * 3 2 1 6 6 H 1.07995 * 120.00229 * 245.44660 * 5 3 2 7 7 C 1.37884 * 120.00163 * 65.44598 * 5 3 2 8 8 N 1.31517 * 119.99592 * 9.49199 * 7 5 3 9 9 Si 1.86803 * 120.00075 * 189.48919 * 7 5 3 10 10 H 1.48505 * 109.46846 * 84.99609 * 9 7 5 11 11 H 1.48499 * 109.46886 * 204.99738 * 9 7 5 12 12 H 1.48497 * 109.47026 * 324.99629 * 9 7 5 13 13 N 1.46500 * 109.47639 * 65.53484 * 3 2 1 14 14 C 1.34777 * 119.99975 * 275.00075 * 13 3 2 15 15 O 1.21633 * 120.00035 * 0.02562 * 14 13 3 16 16 C 1.47225 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.40296 * 120.65236 * 90.02427 * 16 14 13 18 18 O 1.35427 * 119.77526 * 359.97438 * 17 16 14 19 19 N 1.32181 * 120.44810 * 179.97438 * 17 16 14 20 20 C 1.32079 * 121.97909 * 0.02562 * 19 17 16 21 21 C 1.37907 * 121.28709 * 359.97438 * 20 19 17 22 22 C 1.39204 * 119.39467 * 0.02562 * 21 20 19 23 23 O 1.35500 * 120.90265 * 179.72306 * 22 21 20 24 24 C 1.42901 * 117.00183 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.47263 * 300.00806 * 1 2 3 26 26 H 1.09004 * 109.46797 * 60.00686 * 1 2 3 27 27 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47263 * 239.99194 * 2 1 3 29 29 H 1.08997 * 109.46432 * 119.99212 * 2 1 3 30 30 H 0.97006 * 119.99275 * 179.97438 * 8 7 5 31 31 H 0.96993 * 120.00128 * 94.99828 * 13 3 2 32 32 H 0.96703 * 114.00268 * 269.99784 * 18 17 16 33 33 H 1.08000 * 119.35478 * 180.02562 * 20 19 17 34 34 H 1.08004 * 120.30096 * 179.97438 * 21 20 19 35 35 H 1.08994 * 109.47055 * 59.99529 * 24 23 22 36 36 H 1.08996 * 109.47083 * 179.97438 * 24 23 22 37 37 H 1.09001 * 109.46919 * 300.00089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8363 5 6 3.5407 1.4447 -0.1371 6 1 4.1565 1.8066 0.6729 7 6 4.1278 0.9847 -1.2968 8 7 3.3852 0.7203 -2.3496 9 14 5.9778 0.7372 -1.3727 10 1 6.3200 -0.6045 -0.8358 11 1 6.4331 0.8371 -2.7826 12 1 6.6507 1.7820 -0.5600 13 7 1.6636 2.0937 1.2572 14 6 0.4473 2.6602 1.3848 15 8 -0.3379 2.6305 0.4563 16 6 0.0688 3.3141 2.6483 17 6 0.3286 4.6774 2.8541 18 8 0.9340 5.4008 1.8823 19 7 -0.0134 5.2605 3.9899 20 6 -0.6051 4.5967 4.9666 21 6 -0.8965 3.2542 4.8461 22 6 -0.5603 2.5847 3.6729 23 8 -0.8274 1.2646 3.5240 24 6 -1.4643 0.6039 4.6194 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 3.7982 0.3971 -3.1656 31 1 2.2895 2.1171 1.9977 32 1 1.8992 5.4090 1.9415 33 1 -0.8665 5.1157 5.8769 34 1 -1.3803 2.7269 5.6550 35 1 -2.4258 1.0766 4.8193 36 1 -1.6206 -0.4455 4.3696 37 1 -0.8325 0.6769 5.5047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356084370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:04 Heat of formation + Delta-G solvation = -78.322766 kcal Electronic energy + Delta-G solvation = -22518.527007 eV Core-core repulsion = 19068.941852 eV Total energy + Delta-G solvation = -3449.585156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97572 -38.88644 -38.50291 -36.71214 -34.97843 -32.45367 -31.84549 -30.90086 -30.30729 -27.68756 -26.96605 -24.50356 -22.92398 -22.79962 -20.71006 -19.45750 -19.14894 -17.77245 -17.54536 -17.12871 -16.12528 -15.82188 -15.38149 -15.23443 -14.79784 -14.62497 -14.22354 -14.08846 -13.29462 -13.05533 -12.81892 -12.66451 -11.97660 -11.74368 -11.73933 -11.55670 -11.42534 -11.32614 -11.01918 -10.76944 -10.33959 -10.21054 -9.84899 -9.64670 -9.14840 -9.08751 -9.05256 -8.80956 -8.46506 -7.83000 -6.13564 -4.19108 0.77891 1.13744 2.83900 3.25140 3.28563 3.32407 3.33363 3.40779 3.73458 4.04209 4.36491 4.50140 4.76525 4.86225 4.91981 4.93862 5.17631 5.19470 5.27817 5.55823 5.59993 5.82093 6.14745 6.39405 6.47063 6.65526 6.99597 7.06684 7.20196 7.36059 7.44351 7.49296 7.63039 7.72900 7.82834 7.85600 8.08670 8.66455 8.79833 9.12381 9.46567 10.94617 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.005446 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.158704 B = 5140.615621 C = 5773.557529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.269 3.731 4 H 0.058 0.942 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.697 5.697 14 C 0.567 3.433 15 O -0.531 6.531 16 C -0.218 4.218 17 C 0.379 3.621 18 O -0.468 6.468 19 N -0.527 5.527 20 C 0.165 3.835 21 C -0.278 4.278 22 C 0.211 3.789 23 O -0.294 6.294 24 C 0.025 3.975 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.386 0.614 32 H 0.408 0.592 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 1.915 16.766 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.168 3.832 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.344 5.344 14 C 0.350 3.650 15 O -0.408 6.408 16 C -0.226 4.226 17 C 0.200 3.800 18 O -0.276 6.276 19 N -0.249 5.249 20 C 0.008 3.992 21 C -0.299 4.299 22 C 0.156 3.844 23 O -0.203 6.203 24 C -0.070 4.070 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.268 0.732 33 H 0.182 0.818 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.180 2.611 15.520 17.298 hybrid contribution 1.425 -1.137 0.576 1.912 sum -5.755 1.474 16.095 17.157 Atomic orbital electron populations 1.21867 0.97962 0.98145 1.01822 1.21831 0.93092 0.99760 1.01014 1.18837 0.94496 0.89037 0.80876 0.92467 1.21148 0.90514 1.44308 1.01573 0.92145 1.24881 0.98360 0.95158 0.95014 1.69993 1.35629 1.43750 1.02114 0.86541 0.85068 0.78679 0.77268 1.20469 1.21167 1.19935 1.46448 1.13924 1.55580 1.18458 1.17383 0.83193 0.78847 0.85612 1.90793 1.50949 1.59275 1.39816 1.20674 1.09787 0.94359 0.97746 1.18822 0.91312 0.84407 0.85476 1.84733 1.25437 1.71706 1.45678 1.67267 1.16507 1.40074 1.01079 1.22319 0.90643 0.90297 0.95910 1.22117 1.10889 0.97795 0.99131 1.19122 0.89902 0.83655 0.91673 1.86169 1.73798 1.18515 1.41850 1.23206 0.96798 0.98220 0.88784 0.93360 0.93152 0.95919 0.90315 0.94780 0.92539 0.78197 0.73222 0.81841 0.83697 0.92209 0.87584 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.52 37.16 0.32 -2.89 16 2 C -0.12 -2.86 5.50 -26.73 -0.15 -3.01 16 3 C 0.27 6.79 2.10 -69.09 -0.15 6.65 16 4 H 0.06 1.70 7.52 -51.93 -0.39 1.31 16 5 C -0.54 -14.05 8.66 -34.44 -0.30 -14.35 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.87 5.15 -17.82 -0.09 1.78 16 8 N -0.88 -24.84 12.16 55.43 0.67 -24.17 16 9 Si 0.90 20.46 29.55 -169.99 -5.02 15.44 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -14.75 5.02 -56.07 -0.28 -15.04 16 14 C 0.57 12.06 5.01 -12.61 -0.06 12.00 16 15 O -0.53 -13.45 14.24 5.25 0.07 -13.37 16 16 C -0.22 -3.80 5.66 -104.57 -0.59 -4.39 16 17 C 0.38 6.16 7.77 -16.63 -0.13 6.03 16 18 O -0.47 -7.54 13.01 -17.97 -0.23 -7.78 16 19 N -0.53 -7.57 10.37 -13.06 -0.14 -7.70 16 20 C 0.16 1.79 11.15 -17.57 -0.20 1.60 16 21 C -0.28 -2.97 9.09 -39.34 -0.36 -3.33 16 22 C 0.21 3.08 6.74 -38.32 -0.26 2.82 16 23 O -0.29 -4.24 10.03 -18.19 -0.18 -4.42 16 24 C 0.02 0.21 9.84 101.05 0.99 1.21 16 25 H 0.05 1.10 5.63 -51.93 -0.29 0.80 16 26 H 0.05 1.23 7.87 -51.93 -0.41 0.82 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 2.09 6.79 -51.93 -0.35 1.73 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.39 7.18 8.51 -40.82 -0.35 6.83 16 32 H 0.41 4.67 9.06 45.56 0.41 5.08 16 33 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.15 1.02 6.45 -52.48 -0.34 0.68 16 35 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -34.30 316.69 -5.05 -39.35 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.75 Total: 8.80 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.97 Total: 4.11 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.26 Total: -46.91 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.34 Total: -25.57 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.30 -5.05 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356084370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.970 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds