Wall clock time and date at job start Tue Mar 31 2020 01:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 H 1.09004 * 109.47090 * 305.53495 * 3 2 1 5 5 C 1.50694 * 109.47097 * 185.53824 * 3 2 1 6 6 H 1.07995 * 120.00229 * 245.44660 * 5 3 2 7 7 C 1.37884 * 120.00163 * 65.44598 * 5 3 2 8 8 N 1.31517 * 119.99592 * 9.49199 * 7 5 3 9 9 Si 1.86803 * 120.00075 * 189.48919 * 7 5 3 10 10 H 1.48505 * 109.46846 * 84.99609 * 9 7 5 11 11 H 1.48499 * 109.46886 * 204.99738 * 9 7 5 12 12 H 1.48497 * 109.47026 * 324.99629 * 9 7 5 13 13 N 1.46500 * 109.47639 * 65.53484 * 3 2 1 14 14 C 1.34777 * 119.99975 * 275.00075 * 13 3 2 15 15 O 1.21633 * 120.00035 * 0.02562 * 14 13 3 16 16 C 1.47225 * 119.99921 * 179.97438 * 14 13 3 17 17 C 1.40296 * 120.65236 * 90.02427 * 16 14 13 18 18 O 1.35427 * 119.77526 * 359.97438 * 17 16 14 19 19 N 1.32181 * 120.44810 * 179.97438 * 17 16 14 20 20 C 1.32079 * 121.97909 * 0.02562 * 19 17 16 21 21 C 1.37907 * 121.28709 * 359.97438 * 20 19 17 22 22 C 1.39204 * 119.39467 * 0.02562 * 21 20 19 23 23 O 1.35500 * 120.90265 * 179.72306 * 22 21 20 24 24 C 1.42901 * 117.00183 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.47263 * 300.00806 * 1 2 3 26 26 H 1.09004 * 109.46797 * 60.00686 * 1 2 3 27 27 H 1.08999 * 109.47110 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47263 * 239.99194 * 2 1 3 29 29 H 1.08997 * 109.46432 * 119.99212 * 2 1 3 30 30 H 0.97006 * 119.99275 * 179.97438 * 8 7 5 31 31 H 0.96993 * 120.00128 * 94.99828 * 13 3 2 32 32 H 0.96703 * 114.00268 * 269.99784 * 18 17 16 33 33 H 1.08000 * 119.35478 * 180.02562 * 20 19 17 34 34 H 1.08004 * 120.30096 * 179.97438 * 21 20 19 35 35 H 1.08994 * 109.47055 * 59.99529 * 24 23 22 36 36 H 1.08996 * 109.47083 * 179.97438 * 24 23 22 37 37 H 1.09001 * 109.46919 * 300.00089 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8363 5 6 3.5407 1.4447 -0.1371 6 1 4.1565 1.8066 0.6729 7 6 4.1278 0.9847 -1.2968 8 7 3.3852 0.7203 -2.3496 9 14 5.9778 0.7372 -1.3727 10 1 6.3200 -0.6045 -0.8358 11 1 6.4331 0.8371 -2.7826 12 1 6.6507 1.7820 -0.5600 13 7 1.6636 2.0937 1.2572 14 6 0.4473 2.6602 1.3848 15 8 -0.3379 2.6305 0.4563 16 6 0.0688 3.3141 2.6483 17 6 0.3286 4.6774 2.8541 18 8 0.9340 5.4008 1.8823 19 7 -0.0134 5.2605 3.9899 20 6 -0.6051 4.5967 4.9666 21 6 -0.8965 3.2542 4.8461 22 6 -0.5603 2.5847 3.6729 23 8 -0.8274 1.2646 3.5240 24 6 -1.4643 0.6039 4.6194 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 3.7982 0.3971 -3.1656 31 1 2.2895 2.1171 1.9977 32 1 1.8992 5.4090 1.9415 33 1 -0.8665 5.1157 5.8769 34 1 -1.3803 2.7269 5.6550 35 1 -2.4258 1.0766 4.8193 36 1 -1.6206 -0.4455 4.3696 37 1 -0.8325 0.6769 5.5047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356084370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:04 Heat of formation + Delta-G solvation = -108.255871 kcal Electronic energy + Delta-G solvation = -22519.825004 eV Core-core repulsion = 19068.941852 eV Total energy + Delta-G solvation = -3450.883152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08910 -40.27073 -39.80017 -37.81430 -36.90654 -34.32862 -33.37255 -32.36152 -31.46887 -28.97582 -28.38262 -25.85196 -24.72748 -23.86186 -22.37456 -21.28190 -20.28372 -19.34580 -18.61698 -18.26282 -17.70246 -17.31897 -16.87006 -16.35321 -16.24641 -15.89881 -15.68682 -15.38419 -14.83844 -14.60643 -14.15579 -13.95195 -13.53928 -13.39337 -13.29326 -12.93843 -12.89262 -12.62146 -12.51406 -12.42693 -12.20704 -12.10818 -11.63319 -11.14997 -11.11552 -10.55006 -10.48875 -10.08295 -9.99383 -9.69907 -8.18998 -6.32583 -0.25786 0.11461 1.45033 1.46142 1.55794 1.68583 1.94144 2.31382 2.44106 2.59211 2.74288 3.12588 3.60820 3.81016 3.92315 3.98645 4.31825 4.39430 4.39905 4.44944 4.52836 4.54335 4.71429 4.75052 4.88093 5.06011 5.21226 5.28906 5.41415 5.49861 5.59954 5.72776 5.87872 6.05326 6.12658 6.46343 6.74747 6.82561 6.90397 7.31725 7.50082 8.89974 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.005446 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.158704 B = 5140.615621 C = 5773.557529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.690 5.690 14 C 0.572 3.428 15 O -0.583 6.583 16 C -0.254 4.254 17 C 0.370 3.630 18 O -0.490 6.490 19 N -0.541 5.541 20 C 0.174 3.826 21 C -0.257 4.257 22 C 0.207 3.793 23 O -0.327 6.327 24 C 0.012 3.988 25 H 0.048 0.952 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.400 0.600 32 H 0.421 0.579 33 H 0.214 0.786 34 H 0.192 0.808 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 1.727 20.498 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.149 4.149 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.338 5.338 14 C 0.358 3.642 15 O -0.463 6.463 16 C -0.262 4.262 17 C 0.191 3.809 18 O -0.300 6.300 19 N -0.264 5.264 20 C 0.019 3.981 21 C -0.278 4.278 22 C 0.151 3.849 23 O -0.238 6.238 24 C -0.081 4.081 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.283 0.717 33 H 0.230 0.770 34 H 0.209 0.791 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.995 2.425 19.315 20.685 hybrid contribution 1.274 -1.073 -0.476 1.733 sum -5.721 1.352 18.839 19.735 Atomic orbital electron populations 1.21694 0.96886 0.99323 1.00413 1.21677 0.93944 0.98934 1.00304 1.18433 0.94103 0.89099 0.80952 0.98073 1.21492 0.91014 1.44104 1.02034 0.90857 1.25788 1.03227 0.94711 0.94518 1.70151 1.37795 1.44761 1.02762 0.85410 0.79066 0.79064 0.77109 1.19542 1.21437 1.18679 1.46195 1.14620 1.55426 1.17510 1.17917 0.82124 0.77666 0.86522 1.90752 1.52264 1.61105 1.42214 1.20413 1.13541 0.95206 0.97046 1.18881 0.91813 0.84007 0.86170 1.84677 1.26858 1.71870 1.46621 1.67381 1.17565 1.40434 1.01028 1.23236 0.88063 0.90654 0.96188 1.22548 1.09153 0.97619 0.98435 1.19305 0.89501 0.84033 0.92017 1.86126 1.74294 1.18624 1.44751 1.23601 0.97927 0.98356 0.88239 0.93322 0.95995 0.93233 0.92882 0.93286 0.92599 0.76560 0.71654 0.76956 0.79127 0.90202 0.86819 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.52 71.98 0.61 -5.31 16 2 C -0.11 -5.49 5.50 30.60 0.17 -5.32 16 3 C 0.28 14.63 2.10 44.24 0.09 14.72 16 4 H 0.00 0.08 7.52 -2.38 -0.02 0.07 16 5 C -0.55 -29.21 8.66 25.60 0.22 -28.99 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.98 5.15 84.66 0.44 1.42 16 8 N -0.92 -53.76 12.16 21.45 0.26 -53.50 16 9 Si 0.97 42.13 29.55 68.60 2.03 44.15 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.69 -30.20 5.02 -449.56 -2.26 -32.46 16 14 C 0.57 25.35 5.01 86.60 0.43 25.79 16 15 O -0.58 -31.32 14.24 -4.14 -0.06 -31.38 16 16 C -0.25 -8.88 5.66 -19.83 -0.11 -8.99 16 17 C 0.37 11.98 7.77 85.14 0.66 12.64 16 18 O -0.49 -16.34 13.01 -87.22 -1.14 -17.48 16 19 N -0.54 -14.40 10.37 -308.27 -3.20 -17.60 16 20 C 0.17 3.03 11.15 84.58 0.94 3.98 16 21 C -0.26 -4.38 9.09 22.42 0.20 -4.18 16 22 C 0.21 5.63 6.74 23.09 0.16 5.79 16 23 O -0.33 -8.91 10.03 -88.01 -0.88 -9.79 16 24 C 0.01 0.17 9.84 113.37 1.12 1.28 16 25 H 0.05 2.27 5.63 -2.39 -0.01 2.26 16 26 H 0.02 1.11 7.87 -2.39 -0.02 1.09 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.92 6.79 -2.39 -0.02 2.90 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 31 H 0.40 15.09 8.51 -92.71 -0.79 14.30 16 32 H 0.42 10.17 9.06 -74.06 -0.67 9.50 16 33 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.19 1.44 6.45 -2.91 -0.02 1.42 16 35 H 0.08 0.77 7.70 -2.39 -0.02 0.75 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 0.73 7.71 -2.39 -0.02 0.71 16 Total: -1.00 -79.55 316.69 -0.65 -80.20 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.34 Total: 25.04 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 4.93 Total: 12.82 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.19 Total: -103.56 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -2.08 Total: -58.65 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -79.55 -0.65 -80.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356084370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.058 kcal (2) G-P(sol) polarization free energy of solvation -79.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds