Wall clock time and date at job start Tue Mar 31 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47363 * 2 1 4 4 N 1.46503 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00089 * 263.43148 * 4 3 2 6 6 H 1.08006 * 119.99632 * 188.11871 * 5 4 3 7 7 C 1.38945 * 119.99915 * 8.12378 * 5 4 3 8 8 N 1.31407 * 120.00560 * 25.94323 * 7 5 4 9 9 Si 1.86808 * 119.99555 * 205.94580 * 7 5 4 10 10 H 1.48497 * 109.47287 * 84.98979 * 9 7 5 11 11 H 1.48502 * 109.46817 * 204.98718 * 9 7 5 12 12 H 1.48498 * 109.47208 * 324.98375 * 9 7 5 13 13 C 1.34773 * 119.99798 * 83.43425 * 4 3 2 14 14 O 1.21290 * 120.00143 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00128 * 359.97438 * 13 4 3 16 16 N 1.46500 * 109.47371 * 179.97438 * 15 13 4 17 17 C 1.34776 * 119.99820 * 179.97438 * 16 15 13 18 18 O 1.21687 * 120.00343 * 0.02562 * 17 16 15 19 19 C 1.46663 * 119.99566 * 179.97438 * 17 16 15 20 20 C 1.36544 * 125.98609 * 179.97438 * 19 17 16 21 21 C 1.40357 * 106.70724 * 180.02562 * 20 19 17 22 22 C 1.35125 * 107.11621 * 359.97438 * 21 20 19 23 23 O 1.33927 * 108.77024 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46478 * 59.99946 * 1 2 3 25 25 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47335 * 300.00339 * 1 2 3 27 27 H 1.08999 * 109.47335 * 239.99660 * 2 1 3 28 28 H 1.09005 * 109.46837 * 119.99936 * 2 1 3 29 29 H 1.09006 * 109.46806 * 59.99625 * 3 2 1 30 30 H 1.08991 * 109.47255 * 299.99911 * 3 2 1 31 31 H 0.97002 * 120.00619 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47123 * 59.99487 * 15 13 4 33 33 H 1.09002 * 109.47172 * 300.00368 * 15 13 4 34 34 H 0.96994 * 119.99893 * 359.97438 * 16 15 13 35 35 H 1.08003 * 126.64780 * 0.02562 * 20 19 17 36 36 H 1.08002 * 126.44318 * 179.97438 * 21 20 19 37 37 H 1.08008 * 125.61627 * 180.26433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5784 1.1804 6 1 5.2621 1.7101 1.1703 7 6 3.5053 1.5466 2.3889 8 7 2.3608 0.9073 2.4791 9 14 4.2118 2.4129 3.8856 10 1 3.8162 3.8440 3.8619 11 1 3.6877 1.7750 5.1200 12 1 5.6929 2.3083 3.8650 13 6 4.1794 1.3087 -1.1586 14 8 5.3923 1.3091 -1.1582 15 6 3.4264 1.1588 -2.4554 16 7 4.3788 1.0320 -3.5613 17 6 3.9300 0.8857 -4.8237 18 8 2.7337 0.8594 -5.0450 19 6 4.8835 0.7593 -5.9309 20 6 4.5656 0.6061 -7.2500 21 6 5.7790 0.5266 -7.9508 22 6 6.7719 0.6339 -7.0405 23 8 6.2283 0.7737 -5.8245 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9564 -0.8899 31 1 1.8829 0.8848 3.3230 32 1 2.7994 2.0361 -2.6151 33 1 2.8000 0.2679 -2.4109 34 1 5.3324 1.0533 -3.3850 35 1 3.5728 0.5559 -7.6722 36 1 5.8971 0.4028 -9.0172 37 1 7.8296 0.6143 -7.2582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359288358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:45 Heat of formation + Delta-G solvation = -44.880924 kcal Electronic energy + Delta-G solvation = -21729.071733 eV Core-core repulsion = 18280.936724 eV Total energy + Delta-G solvation = -3448.135009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.72330 -39.50170 -38.41664 -35.58071 -34.16425 -33.08537 -32.42268 -31.42339 -30.24048 -27.68966 -25.72073 -24.35210 -22.84124 -21.80535 -20.80674 -20.21265 -19.42443 -18.42083 -16.99940 -16.52284 -16.38660 -15.84119 -15.43093 -15.08529 -14.59084 -14.24440 -13.85860 -13.70896 -13.65481 -13.10712 -13.07142 -12.74448 -12.71072 -12.28878 -12.01600 -11.69757 -11.40831 -11.01777 -10.92086 -10.46088 -10.40017 -10.24711 -10.16057 -10.14886 -9.73676 -9.01676 -8.94120 -8.66224 -8.58092 -7.86461 -6.45724 -3.87094 1.04833 2.26671 2.66560 3.09970 3.22140 3.25003 3.27076 3.37357 3.71450 4.06747 4.66004 4.76823 4.79856 4.97135 4.98572 5.49020 5.53944 5.65521 5.75076 5.83228 5.84158 6.00005 6.03389 6.21136 6.23629 6.33065 6.50344 6.62141 6.76241 6.77713 6.84303 7.23357 7.40890 7.65638 7.70939 7.95675 8.25374 8.38823 9.05306 9.31200 9.82439 10.54049 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.004062 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.513092 B = 6891.383840 C = 7821.580361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.119 3.881 4 N -0.428 5.428 5 C -0.313 4.313 6 H 0.107 0.893 7 C 0.035 3.965 8 N -0.857 5.857 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.427 3.573 14 O -0.594 6.594 15 C 0.108 3.892 16 N -0.695 5.695 17 C 0.597 3.403 18 O -0.529 6.529 19 C -0.068 4.068 20 C -0.127 4.127 21 C -0.228 4.228 22 C -0.010 4.010 23 O -0.160 6.160 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.036 0.964 31 H 0.269 0.731 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 -0.536 -13.106 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C -0.005 4.005 4 N -0.145 5.145 5 C -0.440 4.440 6 H 0.124 0.876 7 C -0.169 4.169 8 N -0.495 5.495 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.214 3.786 14 O -0.480 6.480 15 C -0.019 4.019 16 N -0.347 5.347 17 C 0.383 3.617 18 O -0.408 6.408 19 C -0.120 4.120 20 C -0.148 4.148 21 C -0.247 4.247 22 C -0.080 4.080 23 O -0.054 6.054 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.254 0.746 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.122 -0.549 -12.722 12.784 hybrid contribution 0.530 0.290 0.577 0.835 sum 1.652 -0.259 -12.146 12.260 Atomic orbital electron populations 1.21600 0.97015 1.00252 1.00723 1.21892 0.94316 0.97959 1.02285 1.21639 0.80292 0.97256 1.01269 1.43750 1.05521 1.59854 1.05346 1.19737 0.94385 1.47956 0.81912 0.87574 1.25214 0.96411 0.96365 0.98959 1.70112 1.16560 1.35988 1.26871 0.86040 0.79596 0.79688 0.80013 1.20271 1.21060 1.19436 1.19680 0.88008 0.85854 0.85015 1.90497 1.13636 1.57602 1.86296 1.21187 0.91606 1.03286 0.85810 1.45688 1.12243 1.71534 1.05278 1.16528 0.86372 0.77648 0.81177 1.90862 1.14065 1.52152 1.83769 1.22180 0.80761 1.12849 0.96250 1.21944 1.00344 1.01152 0.91363 1.21835 0.91935 1.09744 1.01184 1.24414 0.99768 1.02572 0.81278 1.84129 1.19506 1.69510 1.32287 0.94210 0.93939 0.92657 0.94953 0.88109 0.87682 0.94606 0.92039 0.89744 0.89180 0.74566 0.82249 0.82709 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.54 5.67 -26.73 -0.15 -2.70 16 3 C 0.12 2.56 4.35 -4.04 -0.02 2.54 16 4 N -0.43 -10.49 2.64 -114.81 -0.30 -10.80 16 5 C -0.31 -8.31 9.42 -14.94 -0.14 -8.45 16 6 H 0.11 3.00 7.31 -52.48 -0.38 2.62 16 7 C 0.03 0.86 4.88 -17.47 -0.09 0.78 16 8 N -0.86 -20.85 8.70 55.50 0.48 -20.37 16 9 Si 0.92 19.73 29.63 -169.99 -5.04 14.70 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.43 10.11 7.64 -10.99 -0.08 10.02 16 14 O -0.59 -15.66 15.26 5.55 0.08 -15.58 16 15 C 0.11 2.11 4.76 -5.19 -0.02 2.09 16 16 N -0.69 -12.71 5.52 -62.80 -0.35 -13.06 16 17 C 0.60 10.43 7.79 -12.86 -0.10 10.33 16 18 O -0.53 -10.30 16.86 5.20 0.09 -10.21 16 19 C -0.07 -1.01 7.13 -36.79 -0.26 -1.27 16 20 C -0.13 -1.59 10.62 -39.40 -0.42 -2.01 16 21 C -0.23 -2.22 10.87 -39.89 -0.43 -2.65 16 22 C -0.01 -0.10 12.08 29.62 0.36 0.26 16 23 O -0.16 -2.15 10.40 5.01 0.05 -2.10 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.63 6.44 -51.93 -0.33 0.30 16 28 H 0.10 2.34 6.40 -51.93 -0.33 2.00 16 29 H 0.11 2.42 5.82 -51.93 -0.30 2.12 16 30 H 0.04 0.69 6.72 -51.93 -0.35 0.34 16 31 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 32 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 33 H 0.09 1.73 6.39 -51.93 -0.33 1.40 16 34 H 0.42 7.67 7.19 -40.82 -0.29 7.38 16 35 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.21 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -29.86 316.07 -5.59 -35.45 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.38 Total: 10.21 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.99 Total: 6.98 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.17 Total: -44.22 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: 0.22 Total: -27.88 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.04 Total: 14.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.86 -5.59 -35.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359288358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.428 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds