Wall clock time and date at job start Tue Mar 31 2020 01:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47363 * 2 1 4 4 N 1.46503 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00089 * 263.43148 * 4 3 2 6 6 H 1.08006 * 119.99632 * 188.11871 * 5 4 3 7 7 C 1.38945 * 119.99915 * 8.12378 * 5 4 3 8 8 N 1.31407 * 120.00560 * 25.94323 * 7 5 4 9 9 Si 1.86808 * 119.99555 * 205.94580 * 7 5 4 10 10 H 1.48497 * 109.47287 * 84.98979 * 9 7 5 11 11 H 1.48502 * 109.46817 * 204.98718 * 9 7 5 12 12 H 1.48498 * 109.47208 * 324.98375 * 9 7 5 13 13 C 1.34773 * 119.99798 * 83.43425 * 4 3 2 14 14 O 1.21290 * 120.00143 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00128 * 359.97438 * 13 4 3 16 16 N 1.46500 * 109.47371 * 179.97438 * 15 13 4 17 17 C 1.34776 * 119.99820 * 179.97438 * 16 15 13 18 18 O 1.21687 * 120.00343 * 0.02562 * 17 16 15 19 19 C 1.46663 * 119.99566 * 179.97438 * 17 16 15 20 20 C 1.36544 * 125.98609 * 179.97438 * 19 17 16 21 21 C 1.40357 * 106.70724 * 180.02562 * 20 19 17 22 22 C 1.35125 * 107.11621 * 359.97438 * 21 20 19 23 23 O 1.33927 * 108.77024 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46478 * 59.99946 * 1 2 3 25 25 H 1.08994 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47335 * 300.00339 * 1 2 3 27 27 H 1.08999 * 109.47335 * 239.99660 * 2 1 3 28 28 H 1.09005 * 109.46837 * 119.99936 * 2 1 3 29 29 H 1.09006 * 109.46806 * 59.99625 * 3 2 1 30 30 H 1.08991 * 109.47255 * 299.99911 * 3 2 1 31 31 H 0.97002 * 120.00619 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47123 * 59.99487 * 15 13 4 33 33 H 1.09002 * 109.47172 * 300.00368 * 15 13 4 34 34 H 0.96994 * 119.99893 * 359.97438 * 16 15 13 35 35 H 1.08003 * 126.64780 * 0.02562 * 20 19 17 36 36 H 1.08002 * 126.44318 * 179.97438 * 21 20 19 37 37 H 1.08008 * 125.61627 * 180.26433 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5784 1.1804 6 1 5.2621 1.7101 1.1703 7 6 3.5053 1.5466 2.3889 8 7 2.3608 0.9073 2.4791 9 14 4.2118 2.4129 3.8856 10 1 3.8162 3.8440 3.8619 11 1 3.6877 1.7750 5.1200 12 1 5.6929 2.3083 3.8650 13 6 4.1794 1.3087 -1.1586 14 8 5.3923 1.3091 -1.1582 15 6 3.4264 1.1588 -2.4554 16 7 4.3788 1.0320 -3.5613 17 6 3.9300 0.8857 -4.8237 18 8 2.7337 0.8594 -5.0450 19 6 4.8835 0.7593 -5.9309 20 6 4.5656 0.6061 -7.2500 21 6 5.7790 0.5266 -7.9508 22 6 6.7719 0.6339 -7.0405 23 8 6.2283 0.7737 -5.8245 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9564 -0.8899 31 1 1.8829 0.8848 3.3230 32 1 2.7994 2.0361 -2.6151 33 1 2.8000 0.2679 -2.4109 34 1 5.3324 1.0533 -3.3850 35 1 3.5728 0.5559 -7.6722 36 1 5.8971 0.4028 -9.0172 37 1 7.8296 0.6143 -7.2582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359288358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:45 Heat of formation + Delta-G solvation = -64.905111 kcal Electronic energy + Delta-G solvation = -21729.940047 eV Core-core repulsion = 18280.936724 eV Total energy + Delta-G solvation = -3449.003322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.64868 -41.07430 -40.05777 -37.39563 -35.65864 -34.22115 -34.00372 -33.21658 -31.33076 -29.20922 -27.38116 -26.07955 -24.05916 -22.69260 -22.41358 -21.41688 -21.07649 -19.71236 -18.88110 -17.93223 -17.45022 -17.21876 -16.98776 -16.58488 -16.29450 -15.86618 -15.45544 -15.34359 -15.14355 -14.27696 -14.12879 -13.98845 -13.90051 -13.75605 -13.53839 -13.42416 -13.13042 -12.70157 -12.54376 -12.15695 -12.10129 -11.99816 -11.58885 -11.40726 -11.04192 -10.80725 -10.50647 -10.38560 -9.75438 -9.66248 -8.36914 -5.87107 0.00920 1.35110 1.43359 1.44835 1.53732 1.64595 1.87361 2.05626 2.09889 2.31358 2.97563 3.04195 3.66869 3.80649 3.97296 4.09960 4.21075 4.25756 4.44053 4.52436 4.62310 4.68377 4.83697 4.91514 4.95055 5.05710 5.08143 5.20695 5.35741 5.41967 5.45699 5.58927 5.84033 5.89852 6.02334 6.34785 6.47071 6.87194 7.11437 7.40997 7.92997 8.60596 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.004062 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.513092 B = 6891.383840 C = 7821.580361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.119 4.119 3 C 0.120 3.880 4 N -0.437 5.437 5 C -0.356 4.356 6 H 0.077 0.923 7 C 0.012 3.988 8 N -0.857 5.857 9 Si 0.981 3.019 10 H -0.270 1.270 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.417 3.583 14 O -0.630 6.630 15 C 0.123 3.877 16 N -0.700 5.700 17 C 0.600 3.400 18 O -0.557 6.557 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.230 4.230 22 C 0.007 3.993 23 O -0.179 6.179 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.276 0.724 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.414 0.586 35 H 0.166 0.834 36 H 0.191 0.809 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 -0.512 -14.489 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C -0.002 4.002 4 N -0.153 5.153 5 C -0.483 4.483 6 H 0.094 0.906 7 C -0.193 4.193 8 N -0.493 5.493 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.206 3.794 14 O -0.519 6.519 15 C -0.004 4.004 16 N -0.353 5.353 17 C 0.388 3.612 18 O -0.438 6.438 19 C -0.165 4.165 20 C -0.137 4.137 21 C -0.248 4.248 22 C -0.062 4.062 23 O -0.075 6.075 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.252 0.748 35 H 0.183 0.817 36 H 0.208 0.792 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.874 -0.536 -14.110 14.147 hybrid contribution 0.662 0.240 0.929 1.165 sum 1.536 -0.296 -13.181 13.273 Atomic orbital electron populations 1.21522 0.94149 1.01543 1.01484 1.21757 0.96728 0.96557 1.00718 1.21716 0.78662 0.98263 1.01590 1.43949 1.06722 1.59522 1.05101 1.19601 0.93675 1.51385 0.83662 0.90553 1.25853 0.96842 0.95954 1.00658 1.70182 1.16652 1.34746 1.27760 0.85147 0.78322 0.78845 0.77169 1.19530 1.19779 1.20408 1.20319 0.87886 0.85093 0.86128 1.90455 1.15317 1.59095 1.87068 1.20966 0.91334 1.03905 0.84166 1.45693 1.11800 1.72288 1.05468 1.16819 0.86690 0.76489 0.81212 1.90823 1.15268 1.53522 1.84204 1.21743 0.81334 1.17471 0.95980 1.22282 1.01880 0.98796 0.90732 1.22246 0.90410 1.09300 1.02871 1.25466 1.01776 0.99125 0.79817 1.84115 1.18890 1.70124 1.34346 0.92311 0.92424 0.92978 0.94819 0.91324 0.89254 0.92169 0.91357 0.88583 0.88714 0.74809 0.81651 0.79219 0.72973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.91 71.98 0.71 -3.40 16 2 C -0.12 -4.77 5.67 30.60 0.17 -4.60 16 3 C 0.12 5.18 4.35 86.38 0.38 5.56 16 4 N -0.44 -22.04 2.64 -635.53 -1.68 -23.72 16 5 C -0.36 -19.63 9.42 84.04 0.79 -18.83 16 6 H 0.08 4.57 7.31 -2.91 -0.02 4.55 16 7 C 0.01 0.59 4.88 84.93 0.41 1.00 16 8 N -0.86 -41.66 8.70 21.66 0.19 -41.48 16 9 Si 0.98 40.64 29.63 68.60 2.03 42.67 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.42 20.42 7.64 87.66 0.67 21.09 16 14 O -0.63 -34.80 15.26 -3.06 -0.05 -34.84 16 15 C 0.12 4.90 4.76 85.63 0.41 5.31 16 16 N -0.70 -26.28 5.52 -470.82 -2.60 -28.88 16 17 C 0.60 21.24 7.79 86.44 0.67 21.92 16 18 O -0.56 -21.81 16.86 -4.31 -0.07 -21.88 16 19 C -0.11 -3.34 7.13 24.08 0.17 -3.17 16 20 C -0.12 -2.72 10.62 22.39 0.24 -2.48 16 21 C -0.23 -3.69 10.87 22.07 0.24 -3.45 16 22 C 0.01 0.12 12.08 67.10 0.81 0.93 16 23 O -0.18 -4.63 10.40 -4.99 -0.05 -4.69 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.03 1.31 6.44 -2.39 -0.02 1.30 16 28 H 0.07 3.21 6.40 -2.38 -0.02 3.19 16 29 H 0.09 4.12 5.82 -2.38 -0.01 4.11 16 30 H 0.06 2.26 6.72 -2.39 -0.02 2.25 16 31 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 32 H 0.10 3.57 7.42 -2.38 -0.02 3.55 16 33 H 0.10 3.66 6.39 -2.39 -0.02 3.65 16 34 H 0.41 15.89 7.19 -92.71 -0.67 15.23 16 35 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.25 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -67.16 316.07 3.89 -63.27 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.44 Total: 29.68 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.68 Total: 19.87 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -4.09 Total: -94.08 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -0.17 Total: -61.41 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -67.16 3.89 -63.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359288358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.637 kcal (2) G-P(sol) polarization free energy of solvation -67.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds