Wall clock time and date at job start Tue Mar 31 2020 01:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47576 * 240.00307 * 2 1 3 5 5 H 1.07997 * 119.99981 * 241.36674 * 4 2 1 6 6 C 1.37872 * 119.99948 * 61.35491 * 4 2 1 7 7 N 1.31513 * 120.00146 * 193.96826 * 6 4 2 8 8 Si 1.86802 * 120.00236 * 13.96948 * 6 4 2 9 9 H 1.48499 * 109.46991 * 84.54879 * 8 6 4 10 10 H 1.48498 * 109.47435 * 204.55812 * 8 6 4 11 11 H 1.48499 * 109.46719 * 324.55592 * 8 6 4 12 12 C 1.53004 * 109.47345 * 119.99908 * 2 1 3 13 13 N 1.46897 * 109.47264 * 300.00410 * 12 2 1 14 14 C 1.39490 * 111.00219 * 179.97438 * 13 12 2 15 15 C 1.39254 * 119.93478 * 299.72713 * 14 13 12 16 16 F 1.35099 * 119.96846 * 359.97438 * 15 14 13 17 17 C 1.37885 * 120.06678 * 179.72057 * 15 14 13 18 18 C 1.39803 * 119.93018 * 0.52827 * 17 15 14 19 19 C 1.43198 * 120.06552 * 179.76581 * 18 17 15 20 20 N 8.89273 * 104.20639 * 110.96420 * 2 1 3 21 21 C 1.39804 * 119.87371 * 359.74347 * 18 17 15 22 22 C 1.37875 * 119.93418 * 0.02562 * 21 18 17 23 23 F 1.35095 * 119.97305 * 179.97438 * 22 21 18 24 24 H 1.09000 * 109.47202 * 309.31315 * 1 2 3 25 25 H 1.09005 * 109.46929 * 69.31505 * 1 2 3 26 26 H 1.09004 * 109.46784 * 189.31246 * 1 2 3 27 27 H 1.09006 * 109.47069 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47070 * 300.00144 * 3 2 1 29 29 H 1.09002 * 109.47065 * 60.00283 * 3 2 1 30 30 H 0.97007 * 120.00180 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47217 * 180.02562 * 12 2 1 32 32 H 1.09006 * 109.46926 * 60.00395 * 12 2 1 33 33 H 1.00904 * 110.99878 * 303.95149 * 13 12 2 34 34 H 1.07992 * 120.03524 * 180.25318 * 17 15 14 35 35 H 1.07992 * 120.03814 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6350 -1.6011 -1.1315 6 6 1.7226 -0.2231 -2.4825 7 7 1.9163 -0.9722 -3.5460 8 14 1.0278 1.5009 -2.6683 9 1 2.1419 2.4819 -2.7080 10 1 0.2472 1.5868 -3.9287 11 1 0.1419 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0288 2.4487 14 6 1.9972 -0.6616 3.6087 15 6 1.6512 -1.9880 3.8540 16 9 0.8831 -2.6599 2.9687 17 6 2.0962 -2.6180 4.9970 18 6 2.8862 -1.9203 5.9154 19 6 3.3457 -2.5702 7.1058 20 7 3.7124 -3.0844 8.0501 21 6 3.2273 -0.5870 5.6692 22 6 2.7833 0.0361 4.5223 23 9 3.1120 1.3246 4.2839 24 1 -0.3633 0.6511 0.7951 25 1 -0.3633 0.3630 -0.9615 26 1 -0.3633 -1.0142 0.1663 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6986 -0.6292 -4.4270 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7490 1.2492 33 1 1.8198 0.9435 2.4402 34 1 1.8309 -3.6479 5.1847 35 1 3.8378 -0.0457 6.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413406948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:08 Heat of formation + Delta-G solvation = -33.256765 kcal Electronic energy + Delta-G solvation = -21562.458634 eV Core-core repulsion = 18003.740172 eV Total energy + Delta-G solvation = -3558.718463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.07632 -49.95572 -40.56239 -39.02312 -37.51683 -35.79347 -33.70805 -31.57983 -30.68715 -28.02421 -27.23940 -26.65383 -24.36133 -23.88279 -20.81712 -20.59427 -18.99634 -18.23422 -17.82587 -17.48727 -17.11049 -16.90122 -16.80364 -16.32255 -15.91049 -15.60465 -15.36352 -14.94522 -14.81160 -14.64594 -14.53069 -14.31208 -13.91337 -13.70403 -13.53378 -13.38340 -13.15818 -12.93245 -12.59041 -12.31035 -12.04870 -11.91515 -11.67492 -11.02377 -10.99372 -10.58152 -10.32628 -9.93284 -9.05217 -8.28564 -6.28703 -0.58276 -0.12878 1.36882 1.40230 1.50834 1.51859 1.58294 2.36376 2.41030 2.54137 2.84589 2.94952 3.08668 3.38097 3.53199 3.83067 4.10833 4.22363 4.28321 4.37402 4.48174 4.60179 4.71191 4.78645 4.87780 4.90362 4.97407 5.04456 5.11224 5.22241 5.38921 5.55678 5.67870 5.81803 5.86593 6.10781 6.34923 6.36343 6.76265 7.36672 8.88228 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.004485 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.558470 B = 6241.822749 C = 6710.647934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.036 3.964 3 C -0.153 4.153 4 C -0.513 4.513 5 H 0.033 0.967 6 C 0.019 3.981 7 N -0.945 5.945 8 Si 0.939 3.061 9 H -0.281 1.281 10 H -0.317 1.317 11 H -0.212 1.212 12 C 0.090 3.910 13 N -0.626 5.626 14 C 0.084 3.916 15 C 0.085 3.915 16 F -0.130 7.130 17 C -0.069 4.069 18 C -0.005 4.005 19 C 0.289 3.711 20 N -0.448 5.448 21 C -0.063 4.063 22 C 0.063 3.937 23 F -0.128 7.128 24 H 0.058 0.942 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.263 0.737 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.369 0.631 34 H 0.174 0.826 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 3.331 19.083 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.035 3.965 3 C -0.210 4.210 4 C -0.552 4.552 5 H 0.052 0.948 6 C -0.178 4.178 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.208 1.208 10 H -0.247 1.247 11 H -0.136 1.136 12 C -0.036 4.036 13 N -0.250 5.250 14 C -0.021 4.021 15 C 0.062 3.938 16 F -0.109 7.109 17 C -0.090 4.090 18 C -0.010 4.010 19 C -0.026 4.026 20 N -0.123 5.123 21 C -0.085 4.085 22 C 0.041 3.959 23 F -0.106 7.106 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.194 0.806 34 H 0.191 0.809 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.069 2.274 20.219 20.347 hybrid contribution 0.391 1.013 -1.622 1.952 sum 0.460 3.287 18.597 18.891 Atomic orbital electron populations 1.22052 0.96487 1.00242 0.99726 1.18485 0.93581 0.92618 0.91842 1.22349 1.00987 0.97465 1.00190 1.21091 1.32589 1.11025 0.90468 0.94844 1.25775 0.95420 1.01186 0.95453 1.70103 1.50931 1.38116 0.99339 0.86416 0.79396 0.80637 0.76638 1.20837 1.24682 1.13557 1.22046 0.96709 0.98326 0.86479 1.57343 1.58708 1.08480 1.00462 1.19353 0.94921 0.93441 0.94351 1.16824 0.97585 0.89101 0.90261 1.91535 1.72750 1.79453 1.67120 1.21163 0.95498 1.01952 0.90416 1.15044 1.02934 0.92646 0.90385 1.25172 0.92609 0.92702 0.92118 1.81331 1.09904 1.09105 1.11964 1.21148 0.98658 0.93149 0.95550 1.17085 1.00500 0.80768 0.97594 1.91525 1.90924 1.33779 1.94405 0.92329 0.94634 0.94444 0.92950 0.94870 0.91196 0.92790 0.94392 0.90741 0.80584 0.80851 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 7.55 71.98 0.54 -4.57 16 2 C 0.04 1.49 0.57 -52.93 -0.03 1.46 16 3 C -0.15 -5.66 7.37 71.98 0.53 -5.13 16 4 C -0.51 -27.54 8.62 25.60 0.22 -27.32 16 5 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 6 C 0.02 1.07 5.32 84.65 0.45 1.52 16 7 N -0.95 -58.03 13.96 21.45 0.30 -57.73 16 8 Si 0.94 43.15 22.79 68.60 1.56 44.71 16 9 H -0.28 -12.56 7.10 99.48 0.71 -11.85 16 10 H -0.32 -15.10 7.11 99.48 0.71 -14.39 16 11 H -0.21 -8.52 4.65 99.48 0.46 -8.05 16 12 C 0.09 3.17 4.24 86.30 0.37 3.54 16 13 N -0.63 -17.55 5.88 -338.10 -1.99 -19.54 16 14 C 0.08 1.95 5.78 38.42 0.22 2.17 16 15 C 0.08 1.87 6.97 22.43 0.16 2.03 16 16 F -0.13 -3.62 15.08 44.97 0.68 -2.94 16 17 C -0.07 -1.06 9.72 22.56 0.22 -0.84 16 18 C -0.01 -0.07 5.74 -21.28 -0.12 -0.19 16 19 C 0.29 4.75 15.33 88.33 1.35 6.10 16 20 N -0.45 -9.64 18.54 19.00 0.35 -9.29 16 21 C -0.06 -0.83 9.72 22.56 0.22 -0.61 16 22 C 0.06 1.17 7.28 22.43 0.16 1.33 16 23 F -0.13 -2.52 16.24 44.97 0.73 -1.79 16 24 H 0.06 2.01 7.88 -2.39 -0.02 2.00 16 25 H 0.03 1.50 4.30 -2.38 -0.01 1.49 16 26 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.03 1.31 2.25 -2.39 -0.01 1.30 16 29 H 0.07 2.07 6.57 -2.39 -0.02 2.05 16 30 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 2.83 6.05 -2.38 -0.01 2.81 16 33 H 0.37 9.50 5.67 -89.69 -0.51 8.99 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -64.61 295.08 6.33 -58.27 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.40 Total: 8.83 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.29 Total: -20.52 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.34 Total: -86.56 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 1.41 Total: -4.74 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.56 Total: 44.71 kcal Total: -64.61 6.33 -58.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413406948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.015 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds