Wall clock time and date at job start Tue Mar 31 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45206 * 109.47113 * 2 1 4 4 C 1.34887 * 117.00105 * 179.97438 * 3 2 1 5 5 O 1.21626 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.46565 * 120.00135 * 180.02562 * 4 3 2 7 7 C 1.34779 * 126.38357 * 180.02562 * 6 4 3 8 8 O 1.34638 * 108.80956 * 179.97438 * 7 6 4 9 9 C 1.34773 * 109.28341 * 359.97438 * 8 7 6 10 10 N 1.30475 * 126.03230 * 179.97438 * 9 8 7 11 11 C 1.46508 * 120.00125 * 0.02562 * 10 9 8 12 12 C 1.52998 * 109.46804 * 115.59332 * 11 10 9 13 13 C 1.50696 * 115.55024 * 39.51646 * 12 11 10 14 14 H 1.08002 * 119.99782 * 264.86483 * 13 12 11 15 15 C 1.37873 * 120.00121 * 84.86994 * 13 12 11 16 16 N 1.31514 * 120.00018 * 352.90452 * 15 13 12 17 17 Si 1.86808 * 120.00125 * 172.90906 * 15 13 12 18 18 H 1.48501 * 109.46813 * 89.99804 * 17 15 13 19 19 H 1.48494 * 109.47162 * 209.99828 * 17 15 13 20 20 H 1.48498 * 109.46634 * 329.99859 * 17 15 13 21 21 C 1.52996 * 117.49817 * 253.80252 * 12 11 10 22 22 C 1.52993 * 60.00266 * 252.51835 * 21 12 11 23 23 N 1.37084 * 107.93245 * 359.75071 * 9 8 7 24 24 H 0.96999 * 126.63080 * 180.27488 * 23 9 8 25 25 H 1.09003 * 109.46802 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47253 * 300.00088 * 1 2 3 27 27 H 1.09004 * 109.46566 * 60.00052 * 1 2 3 28 28 H 1.08999 * 109.47250 * 120.00090 * 2 1 3 29 29 H 1.09000 * 109.47663 * 240.00273 * 2 1 3 30 30 H 1.08004 * 125.59821 * 359.97438 * 7 6 4 31 31 H 1.09004 * 109.46832 * 235.59771 * 11 10 9 32 32 H 1.09005 * 109.46762 * 355.58937 * 11 10 9 33 33 H 0.97007 * 120.00103 * 180.02562 * 16 15 13 34 34 H 1.09009 * 117.50128 * 0.02562 * 21 12 11 35 35 H 1.08999 * 117.50051 * 145.02356 * 21 12 11 36 36 H 1.09005 * 117.49579 * 252.51239 * 22 21 12 37 37 H 1.09001 * 117.52454 * 107.48458 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0922 0.5812 0.0015 6 6 3.9115 2.9001 0.0011 7 6 5.2197 3.2242 0.0012 8 8 5.3347 4.5657 0.0013 9 6 4.1052 5.1177 0.0007 10 7 3.8372 6.3947 0.0010 11 6 4.9285 7.3722 0.0016 12 6 4.8929 8.1770 -1.2992 13 6 3.5198 8.5527 -1.7936 14 1 3.0215 7.9341 -2.5254 15 6 2.8998 9.6860 -1.3119 16 7 3.4418 10.3619 -0.3224 17 14 1.2898 10.2615 -2.0645 18 1 0.1538 9.6341 -1.3425 19 1 1.1916 11.7390 -1.9533 20 1 1.2443 9.8686 -3.4958 21 6 5.9630 7.8707 -2.3489 22 6 6.0293 9.1713 -1.5459 23 7 3.1859 4.1008 -0.0055 24 1 2.2204 4.1935 -0.0111 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 6.0411 2.5229 0.0012 31 1 4.8115 8.0468 0.8497 32 1 5.8828 6.8513 0.0807 33 1 3.0054 11.1591 0.0168 34 1 6.6922 7.0956 -2.1130 35 1 5.6740 7.9408 -3.3975 36 1 5.7838 10.0971 -2.0663 37 1 6.8019 9.2525 -0.7814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418931678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:18 Heat of formation + Delta-G solvation = -23.787705 kcal Electronic energy + Delta-G solvation = -21369.511313 eV Core-core repulsion = 17922.290975 eV Total energy + Delta-G solvation = -3447.220338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.54458 -40.44275 -36.93992 -36.71574 -35.05068 -33.76770 -32.00055 -31.75288 -29.55263 -25.91020 -25.26245 -24.87762 -23.04895 -22.15739 -21.02650 -20.45720 -19.08697 -18.60924 -17.33048 -16.98389 -16.65426 -16.19647 -15.87026 -14.90662 -14.52320 -14.38619 -14.30153 -13.89892 -13.62031 -13.57558 -13.05674 -12.71908 -12.35027 -12.33059 -11.95923 -11.70810 -11.55790 -11.05969 -10.87196 -10.86563 -10.82981 -10.41997 -10.19635 -10.05341 -9.43248 -9.11678 -8.50969 -8.30345 -7.97494 -7.13465 -5.87650 -3.87849 0.88215 2.19836 2.66168 2.85277 3.06724 3.25851 3.39295 3.45146 3.48735 4.48809 4.54437 4.59781 4.63828 4.74821 4.92305 5.31883 5.35175 5.43228 5.43641 5.44411 5.63838 5.64770 5.82480 6.04199 6.25457 6.35725 6.57492 6.72963 6.80960 7.10751 7.13841 7.22073 7.41095 7.51349 7.62264 7.65071 8.04297 8.53087 8.79812 9.08701 9.74321 11.23042 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.004192 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.076949 B = 6677.588648 C = 7760.848462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.352 6.352 4 C 0.550 3.450 5 O -0.501 6.501 6 C -0.039 4.039 7 C 0.066 3.934 8 O -0.250 6.250 9 C 0.474 3.526 10 N -0.491 5.491 11 C 0.112 3.888 12 C 0.048 3.952 13 C -0.466 4.466 14 H 0.055 0.945 15 C 0.072 3.928 16 N -0.883 5.883 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.216 4.216 22 C -0.156 4.156 23 N -0.640 5.640 24 H 0.444 0.556 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.020 0.980 33 H 0.256 0.744 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.194 -19.062 2.322 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.269 6.269 4 C 0.395 3.605 5 O -0.390 6.390 6 C -0.140 4.140 7 C -0.008 4.008 8 O -0.145 6.145 9 C 0.161 3.839 10 N -0.236 5.236 11 C -0.016 4.016 12 C 0.047 3.953 13 C -0.504 4.504 14 H 0.073 0.927 15 C -0.130 4.130 16 N -0.521 5.521 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.253 4.253 22 C -0.194 4.194 23 N -0.281 5.281 24 H 0.286 0.714 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.236 0.764 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.396 -18.505 2.445 18.718 hybrid contribution -0.701 -0.029 -0.374 0.795 sum -2.097 -18.534 2.070 18.767 Atomic orbital electron populations 1.21828 0.92321 1.03103 1.03897 1.23099 0.95554 0.79362 1.02862 1.86607 1.23138 1.33027 1.84110 1.19371 0.80975 0.87174 0.72994 1.90924 1.60475 1.40723 1.46915 1.19296 0.91500 0.85395 1.17764 1.23810 0.95689 0.83592 0.97740 1.85048 1.32060 1.17741 1.79602 1.22283 0.75654 0.89166 0.96757 1.73053 1.30830 0.92041 1.27687 1.21434 0.87990 0.91746 1.00476 1.18893 0.90795 0.95504 0.90069 1.20160 0.99208 1.07752 1.23279 0.92714 1.24873 0.96905 0.96616 0.94593 1.70003 1.39290 1.17909 1.24874 0.86687 0.84542 0.77594 0.79654 1.20785 1.21453 1.20144 1.23077 1.04845 0.99531 0.97863 1.22513 1.01976 0.93227 1.01675 1.42313 1.09153 1.00983 1.75694 0.71352 0.90050 0.91273 0.91228 0.90914 0.90885 0.76409 0.89861 0.96142 0.93385 0.91956 0.90641 0.90009 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.53 6.20 37.16 0.23 0.76 16 3 O -0.35 -3.90 10.23 -41.01 -0.42 -4.32 16 4 C 0.55 6.77 7.93 34.09 0.27 7.04 16 5 O -0.50 -6.70 16.67 -19.36 -0.32 -7.02 16 6 C -0.04 -0.51 7.09 -81.86 -0.58 -1.09 16 7 C 0.07 0.83 11.75 29.51 0.35 1.18 16 8 O -0.25 -4.18 9.67 3.49 0.03 -4.14 16 9 C 0.47 8.89 8.91 -88.50 -0.79 8.10 16 10 N -0.49 -11.19 9.95 -62.58 -0.62 -11.82 16 11 C 0.11 2.68 6.46 -4.04 -0.03 2.65 16 12 C 0.05 1.23 1.75 -155.66 -0.27 0.96 16 13 C -0.47 -13.12 8.15 -34.44 -0.28 -13.40 16 14 H 0.05 1.58 7.82 -52.49 -0.41 1.17 16 15 C 0.07 2.03 5.39 -17.82 -0.10 1.94 16 16 N -0.88 -25.58 12.96 55.43 0.72 -24.87 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.22 -4.93 9.88 -26.74 -0.26 -5.20 16 22 C -0.16 -3.75 9.49 -26.73 -0.25 -4.01 16 23 N -0.64 -9.72 6.40 -10.75 -0.07 -9.79 16 24 H 0.44 6.13 8.96 -40.82 -0.37 5.76 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.22 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.08 2.13 8.14 -51.93 -0.42 1.71 16 32 H 0.02 0.44 6.91 -51.93 -0.36 0.09 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.06 1.30 8.08 -51.92 -0.42 0.88 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -32.35 331.45 -6.96 -39.30 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.92 Total: 2.42 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.33 Total: -1.61 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.03 Total: -46.47 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.71 Total: -15.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.35 -6.96 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418931678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.517 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds