Wall clock time and date at job start Tue Mar 31 2020 02:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45206 * 109.47113 * 2 1 4 4 C 1.34887 * 117.00105 * 179.97438 * 3 2 1 5 5 O 1.21626 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.46565 * 120.00135 * 180.02562 * 4 3 2 7 7 C 1.34779 * 126.38357 * 180.02562 * 6 4 3 8 8 O 1.34638 * 108.80956 * 179.97438 * 7 6 4 9 9 C 1.34773 * 109.28341 * 359.97438 * 8 7 6 10 10 N 1.30475 * 126.03230 * 179.97438 * 9 8 7 11 11 C 1.46508 * 120.00125 * 0.02562 * 10 9 8 12 12 C 1.52998 * 109.46804 * 115.59332 * 11 10 9 13 13 C 1.50696 * 115.55024 * 39.51646 * 12 11 10 14 14 H 1.08002 * 119.99782 * 264.86483 * 13 12 11 15 15 C 1.37873 * 120.00121 * 84.86994 * 13 12 11 16 16 N 1.31514 * 120.00018 * 352.90452 * 15 13 12 17 17 Si 1.86808 * 120.00125 * 172.90906 * 15 13 12 18 18 H 1.48501 * 109.46813 * 89.99804 * 17 15 13 19 19 H 1.48494 * 109.47162 * 209.99828 * 17 15 13 20 20 H 1.48498 * 109.46634 * 329.99859 * 17 15 13 21 21 C 1.52996 * 117.49817 * 253.80252 * 12 11 10 22 22 C 1.52993 * 60.00266 * 252.51835 * 21 12 11 23 23 N 1.37084 * 107.93245 * 359.75071 * 9 8 7 24 24 H 0.96999 * 126.63080 * 180.27488 * 23 9 8 25 25 H 1.09003 * 109.46802 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47253 * 300.00088 * 1 2 3 27 27 H 1.09004 * 109.46566 * 60.00052 * 1 2 3 28 28 H 1.08999 * 109.47250 * 120.00090 * 2 1 3 29 29 H 1.09000 * 109.47663 * 240.00273 * 2 1 3 30 30 H 1.08004 * 125.59821 * 359.97438 * 7 6 4 31 31 H 1.09004 * 109.46832 * 235.59771 * 11 10 9 32 32 H 1.09005 * 109.46762 * 355.58937 * 11 10 9 33 33 H 0.97007 * 120.00103 * 180.02562 * 16 15 13 34 34 H 1.09009 * 117.50128 * 0.02562 * 21 12 11 35 35 H 1.08999 * 117.50051 * 145.02356 * 21 12 11 36 36 H 1.09005 * 117.49579 * 252.51239 * 22 21 12 37 37 H 1.09001 * 117.52454 * 107.48458 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0922 0.5812 0.0015 6 6 3.9115 2.9001 0.0011 7 6 5.2197 3.2242 0.0012 8 8 5.3347 4.5657 0.0013 9 6 4.1052 5.1177 0.0007 10 7 3.8372 6.3947 0.0010 11 6 4.9285 7.3722 0.0016 12 6 4.8929 8.1770 -1.2992 13 6 3.5198 8.5527 -1.7936 14 1 3.0215 7.9341 -2.5254 15 6 2.8998 9.6860 -1.3119 16 7 3.4418 10.3619 -0.3224 17 14 1.2898 10.2615 -2.0645 18 1 0.1538 9.6341 -1.3425 19 1 1.1916 11.7390 -1.9533 20 1 1.2443 9.8686 -3.4958 21 6 5.9630 7.8707 -2.3489 22 6 6.0293 9.1713 -1.5459 23 7 3.1859 4.1008 -0.0055 24 1 2.2204 4.1935 -0.0111 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 6.0411 2.5229 0.0012 31 1 4.8115 8.0468 0.8497 32 1 5.8828 6.8513 0.0807 33 1 3.0054 11.1591 0.0168 34 1 6.6922 7.0956 -2.1130 35 1 5.6740 7.9408 -3.3975 36 1 5.7838 10.0971 -2.0663 37 1 6.8019 9.2525 -0.7814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418931678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:17 Heat of formation + Delta-G solvation = -46.484271 kcal Electronic energy + Delta-G solvation = -21370.495510 eV Core-core repulsion = 17922.290975 eV Total energy + Delta-G solvation = -3448.204535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.83384 -41.38122 -38.60894 -37.81232 -36.33239 -35.33152 -33.86887 -32.63003 -30.81770 -27.78203 -26.77721 -26.20852 -23.94557 -23.28830 -22.89659 -21.69890 -20.81630 -19.88997 -18.34887 -18.06674 -17.96082 -17.53318 -17.31007 -16.63947 -16.28263 -15.75163 -15.38456 -15.13321 -15.01102 -14.58193 -14.55256 -14.11806 -13.61667 -13.52505 -13.12110 -12.94712 -12.85816 -12.78972 -12.55130 -12.36237 -12.03915 -11.99877 -11.81464 -11.57064 -11.11666 -10.93720 -10.36908 -10.27779 -9.89658 -8.54744 -8.00174 -6.05276 -0.13225 1.28373 1.43160 1.43872 1.47774 1.53178 1.58638 1.72074 2.10958 2.50081 3.30177 3.49084 3.60751 3.65461 4.02704 4.04730 4.18223 4.22126 4.35699 4.46408 4.51593 4.65408 4.76625 4.77666 4.85759 4.92740 4.98121 5.06793 5.21281 5.29046 5.33451 5.61665 5.65893 5.85752 6.04667 6.26970 6.46468 6.51144 6.92517 7.26361 7.58690 9.09833 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019479 B = 0.004192 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.076949 B = 6677.588648 C = 7760.848462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.359 6.359 4 C 0.558 3.442 5 O -0.511 6.511 6 C -0.047 4.047 7 C 0.077 3.923 8 O -0.260 6.260 9 C 0.488 3.512 10 N -0.550 5.550 11 C 0.130 3.870 12 C 0.018 3.982 13 C -0.475 4.475 14 H 0.039 0.961 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.944 3.056 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.192 4.192 22 C -0.157 4.157 23 N -0.631 5.631 24 H 0.449 0.551 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.256 0.744 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -21.305 1.985 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.275 6.275 4 C 0.403 3.597 5 O -0.401 6.401 6 C -0.147 4.147 7 C 0.005 3.995 8 O -0.153 6.153 9 C 0.176 3.824 10 N -0.298 5.298 11 C 0.000 4.000 12 C 0.017 3.983 13 C -0.513 4.513 14 H 0.057 0.943 15 C -0.172 4.172 16 N -0.548 5.548 17 Si 0.771 3.229 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.230 4.230 22 C -0.196 4.196 23 N -0.273 5.273 24 H 0.292 0.708 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.279 0.721 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.425 -20.806 2.099 20.960 hybrid contribution -0.694 0.432 -0.265 0.859 sum -2.118 -20.374 1.835 20.566 Atomic orbital electron populations 1.21860 0.90747 1.04551 1.03566 1.23426 0.96793 0.77950 1.03481 1.86608 1.22292 1.34992 1.83653 1.19125 0.81405 0.86442 0.72698 1.90924 1.60827 1.40744 1.47563 1.19550 0.91613 0.85208 1.18358 1.24692 0.96850 0.82108 0.95896 1.85022 1.30983 1.19942 1.79375 1.22190 0.76856 0.89093 0.94285 1.72970 1.30828 0.93553 1.32442 1.21031 0.89142 0.91677 0.98138 1.19057 0.90257 0.97069 0.91945 1.20314 1.00574 1.07594 1.22786 0.94306 1.25514 0.99833 0.96860 0.95028 1.70108 1.40587 1.18213 1.25890 0.85790 0.81022 0.77208 0.78930 1.20645 1.20935 1.19738 1.23047 1.03734 0.99087 0.97085 1.22429 1.02045 0.92792 1.02289 1.42376 1.09295 1.01023 1.74559 0.70757 0.87702 0.91493 0.91637 0.90218 0.90369 0.72088 0.93109 0.94809 0.93534 0.89474 0.90794 0.92088 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.06 0.80 6.20 71.98 0.45 1.24 16 3 O -0.36 -7.28 10.23 -58.02 -0.59 -7.87 16 4 C 0.56 12.49 7.93 69.99 0.56 13.05 16 5 O -0.51 -12.31 16.67 19.42 0.32 -11.98 16 6 C -0.05 -1.15 7.09 39.17 0.28 -0.87 16 7 C 0.08 1.71 11.75 67.03 0.79 2.50 16 8 O -0.26 -8.14 9.67 -10.44 -0.10 -8.24 16 9 C 0.49 17.94 8.91 179.61 1.60 19.54 16 10 N -0.55 -25.34 9.95 -466.16 -4.64 -29.97 16 11 C 0.13 6.27 6.46 86.38 0.56 6.83 16 12 C 0.02 0.91 1.75 -52.93 -0.09 0.81 16 13 C -0.47 -27.16 8.15 25.60 0.21 -26.95 16 14 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 15 C 0.03 1.53 5.39 84.65 0.46 1.99 16 16 N -0.91 -53.79 12.96 21.45 0.28 -53.51 16 17 Si 0.94 45.46 29.54 68.60 2.03 47.49 16 18 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 21 C -0.19 -8.60 9.88 30.59 0.30 -8.30 16 22 C -0.16 -7.61 9.49 30.59 0.29 -7.32 16 23 N -0.63 -18.42 6.40 -298.69 -1.91 -20.33 16 24 H 0.45 12.05 8.96 -92.71 -0.83 11.22 16 25 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.26 3.26 8.06 -2.91 -0.02 3.23 16 31 H 0.05 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.03 1.47 6.91 -2.38 -0.02 1.45 16 33 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 34 H 0.09 3.43 8.08 -2.38 -0.02 3.41 16 35 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -70.04 331.45 1.78 -68.26 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.26 Total: 14.40 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.13 Total: 1.77 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -6.27 Total: -103.82 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.37 Total: -28.10 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.04 1.78 -68.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418931678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.777 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds