Wall clock time and date at job start Tue Mar 31 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47114 * 2 1 4 4 N 1.46503 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.36971 * 119.99973 * 264.80191 * 4 3 2 6 6 H 1.07998 * 120.00305 * 120.22418 * 5 4 3 7 7 C 1.38975 * 120.00073 * 300.23166 * 5 4 3 8 8 N 1.31414 * 120.00061 * 171.09405 * 7 5 4 9 9 Si 1.86801 * 120.00142 * 351.09000 * 7 5 4 10 10 H 1.48501 * 109.47213 * 94.54727 * 9 7 5 11 11 H 1.48502 * 109.47327 * 214.55162 * 9 7 5 12 12 H 1.48498 * 109.46935 * 334.54908 * 9 7 5 13 13 C 1.34774 * 119.99839 * 84.79979 * 4 3 2 14 14 O 1.21635 * 120.00123 * 5.34981 * 13 4 3 15 15 C 1.47325 * 120.00111 * 185.34484 * 13 4 3 16 16 C 1.38310 * 126.45570 * 352.56741 * 15 13 4 17 17 N 1.34258 * 108.39817 * 179.97438 * 16 15 13 18 18 H 0.96999 * 125.39737 * 179.97438 * 17 16 15 19 19 C 1.37835 * 109.21179 * 359.97438 * 17 16 15 20 20 C 1.46641 * 125.84881 * 179.97438 * 19 17 16 21 21 O 1.21599 * 119.99799 * 179.97438 * 20 19 17 22 22 O 1.34871 * 120.00072 * 359.97438 * 20 19 17 23 23 C 1.45199 * 117.00045 * 180.02562 * 22 20 19 24 24 C 1.36439 * 108.29700 * 359.72471 * 19 17 16 25 25 H 1.09000 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46972 * 299.99655 * 1 2 3 27 27 H 1.09004 * 109.46813 * 60.00017 * 1 2 3 28 28 H 1.08997 * 109.46972 * 240.00345 * 2 1 3 29 29 H 1.08995 * 109.46915 * 120.00140 * 2 1 3 30 30 H 1.08998 * 109.47615 * 300.00316 * 3 2 1 31 31 H 1.09005 * 109.47110 * 60.00022 * 3 2 1 32 32 H 0.96999 * 120.00054 * 179.97438 * 8 7 5 33 33 H 1.08000 * 125.80363 * 0.02562 * 16 15 13 34 34 H 1.09004 * 109.47172 * 180.02562 * 23 22 20 35 35 H 1.09008 * 109.46808 * 299.99477 * 23 22 20 36 36 H 1.08991 * 109.47195 * 59.99478 * 23 22 20 37 37 H 1.08003 * 126.49133 * 180.28874 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1894 1.5502 1.1822 6 1 4.8671 0.7665 1.4872 7 6 4.0117 2.6679 1.9888 8 7 4.5275 2.6948 3.1972 9 14 3.0397 4.1319 1.3553 10 1 1.6265 4.0162 1.7964 11 1 3.6255 5.3856 1.8943 12 1 3.0946 4.1578 -0.1284 13 6 4.1794 1.3366 -1.1615 14 8 3.5756 1.3389 -2.2174 15 6 5.6478 1.2180 -1.1529 16 6 6.4761 1.3440 -0.0524 17 7 7.7450 1.1688 -0.4548 18 1 8.5264 1.2061 0.1186 19 6 7.7613 0.9276 -1.8118 20 6 8.9561 0.6861 -2.6268 21 8 8.8469 0.4834 -3.8208 22 8 10.1763 0.6887 -2.0521 23 6 11.3142 0.4430 -2.9199 24 6 6.4747 0.9465 -2.2657 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 4.4038 3.4751 3.7601 33 1 6.1565 1.5478 0.9589 34 1 12.2320 0.4719 -2.3326 35 1 11.2115 -0.5376 -3.3848 36 1 11.3532 1.2096 -3.6937 37 1 6.1503 0.7871 -3.2834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431401737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:43 Heat of formation + Delta-G solvation = -71.804855 kcal Electronic energy + Delta-G solvation = -21945.501463 eV Core-core repulsion = 18496.198945 eV Total energy + Delta-G solvation = -3449.302518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.08470 -39.74247 -38.37901 -36.31109 -35.18991 -33.19978 -31.69728 -30.70939 -29.65492 -27.59701 -25.91353 -24.93165 -22.92004 -21.79766 -20.84864 -19.83118 -19.18765 -18.56984 -17.00030 -16.63624 -16.33747 -15.83304 -15.31531 -14.73721 -14.33853 -14.15010 -13.86007 -13.70254 -13.26893 -13.06509 -12.95116 -12.79864 -12.41115 -12.20242 -12.12005 -11.77944 -11.49460 -11.39462 -11.00950 -10.92759 -10.84264 -10.58085 -10.40755 -10.09213 -9.88023 -9.21069 -8.74136 -8.59859 -7.84775 -7.50504 -6.57002 -4.44387 1.56369 2.62863 2.72061 3.05863 3.19480 3.32172 3.33584 3.52385 4.08544 4.46101 4.49270 4.81824 5.00640 5.05038 5.08680 5.41408 5.59911 5.64333 5.68327 5.81389 5.91917 5.99918 6.11719 6.30461 6.36896 6.39687 6.46542 6.55762 6.58935 6.81070 6.92186 7.08141 7.25551 7.46728 7.79111 7.89367 8.03044 8.10827 8.88683 9.30631 9.70441 10.48173 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.005143 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.934517 B = 5443.375921 C = 6258.167698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.475 5.475 5 C -0.350 4.350 6 H 0.103 0.897 7 C 0.074 3.926 8 N -0.867 5.867 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.256 1.256 13 C 0.568 3.432 14 O -0.592 6.592 15 C -0.220 4.220 16 C 0.109 3.891 17 N -0.532 5.532 18 H 0.421 0.579 19 C -0.086 4.086 20 C 0.539 3.461 21 O -0.509 6.509 22 O -0.367 6.367 23 C 0.040 3.960 24 C -0.036 4.036 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.277 0.723 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -2.544 -2.738 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.197 5.197 5 C -0.477 4.477 6 H 0.120 0.880 7 C -0.134 4.134 8 N -0.502 5.502 9 Si 0.702 3.298 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.180 1.180 13 C 0.360 3.640 14 O -0.476 6.476 15 C -0.228 4.228 16 C -0.033 4.033 17 N -0.127 5.127 18 H 0.258 0.742 19 C -0.193 4.193 20 C 0.386 3.614 21 O -0.398 6.398 22 O -0.284 6.284 23 C -0.054 4.054 24 C -0.063 4.063 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.698 -2.505 -3.410 7.923 hybrid contribution 0.050 0.787 0.118 0.798 sum 6.748 -1.718 -3.291 7.702 Atomic orbital electron populations 1.21706 0.96435 1.00966 1.01380 1.21792 0.94771 0.98259 1.02269 1.21579 0.82762 0.96147 1.00925 1.43398 1.03709 1.66969 1.05580 1.18952 1.26735 1.05536 0.96492 0.87982 1.25610 0.95367 0.97780 0.94667 1.69669 1.43009 1.30492 1.06982 0.86729 0.80180 0.81802 0.81084 1.19778 1.21119 1.17983 1.17693 0.85532 0.77292 0.83520 1.90629 1.70107 1.55359 1.31534 1.19634 0.94035 1.16267 0.92841 1.25076 0.80588 0.94832 1.02761 1.42119 1.09504 1.53863 1.07217 0.74182 1.18751 0.92096 1.24062 0.84367 1.19951 0.82075 0.73382 0.85974 1.90870 1.86631 1.46918 1.15370 1.86561 1.15810 1.83339 1.42726 1.23211 0.85653 1.01864 0.94689 1.21079 0.88939 0.96993 0.99316 0.93180 0.92987 0.93036 0.92114 0.91556 0.91917 0.91569 0.91248 0.75389 0.88247 0.91914 0.91912 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.13 -2.45 6.22 -26.73 -0.17 -2.62 16 3 C 0.11 2.31 3.99 -4.04 -0.02 2.30 16 4 N -0.48 -10.98 1.77 -116.06 -0.21 -11.19 16 5 C -0.35 -8.16 6.53 -14.98 -0.10 -8.26 16 6 H 0.10 2.43 6.33 -52.49 -0.33 2.09 16 7 C 0.07 1.78 5.35 -17.46 -0.09 1.69 16 8 N -0.87 -21.46 13.96 55.50 0.77 -20.68 16 9 Si 0.88 19.64 25.53 -169.99 -4.34 15.30 16 10 H -0.27 -5.94 7.08 56.52 0.40 -5.54 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.57 13.56 7.59 -12.57 -0.10 13.46 16 14 O -0.59 -15.34 16.56 5.25 0.09 -15.25 16 15 C -0.22 -4.65 6.04 -105.02 -0.63 -5.29 16 16 C 0.11 2.02 10.27 -16.46 -0.17 1.85 16 17 N -0.53 -8.28 6.01 -9.30 -0.06 -8.33 16 18 H 0.42 5.09 8.96 -40.82 -0.37 4.73 16 19 C -0.09 -1.49 7.02 -82.42 -0.58 -2.06 16 20 C 0.54 8.81 7.93 34.12 0.27 9.08 16 21 O -0.51 -9.38 16.65 -19.34 -0.32 -9.70 16 22 O -0.37 -4.89 10.58 -40.96 -0.43 -5.33 16 23 C 0.04 0.38 10.57 101.05 1.07 1.45 16 24 C -0.04 -0.72 10.38 -39.08 -0.41 -1.12 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.36 7.51 -51.93 -0.39 0.97 16 31 H 0.07 1.40 5.65 -51.93 -0.29 1.11 16 32 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.23 4.46 4.67 -52.49 -0.24 4.22 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.15 2.95 8.06 -52.48 -0.42 2.53 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -29.23 318.78 -4.81 -34.04 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.57 Total: 7.70 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -0.55 Total: 8.63 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.51 Total: -40.20 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.67 Total: -30.28 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.34 Total: 15.30 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.23 -4.81 -34.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431401737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.762 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds