Wall clock time and date at job start Tue Mar 31 2020 01:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47114 * 2 1 4 4 N 1.46503 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.36971 * 119.99973 * 264.80191 * 4 3 2 6 6 H 1.07998 * 120.00305 * 120.22418 * 5 4 3 7 7 C 1.38975 * 120.00073 * 300.23166 * 5 4 3 8 8 N 1.31414 * 120.00061 * 171.09405 * 7 5 4 9 9 Si 1.86801 * 120.00142 * 351.09000 * 7 5 4 10 10 H 1.48501 * 109.47213 * 94.54727 * 9 7 5 11 11 H 1.48502 * 109.47327 * 214.55162 * 9 7 5 12 12 H 1.48498 * 109.46935 * 334.54908 * 9 7 5 13 13 C 1.34774 * 119.99839 * 84.79979 * 4 3 2 14 14 O 1.21635 * 120.00123 * 5.34981 * 13 4 3 15 15 C 1.47325 * 120.00111 * 185.34484 * 13 4 3 16 16 C 1.38310 * 126.45570 * 352.56741 * 15 13 4 17 17 N 1.34258 * 108.39817 * 179.97438 * 16 15 13 18 18 H 0.96999 * 125.39737 * 179.97438 * 17 16 15 19 19 C 1.37835 * 109.21179 * 359.97438 * 17 16 15 20 20 C 1.46641 * 125.84881 * 179.97438 * 19 17 16 21 21 O 1.21599 * 119.99799 * 179.97438 * 20 19 17 22 22 O 1.34871 * 120.00072 * 359.97438 * 20 19 17 23 23 C 1.45199 * 117.00045 * 180.02562 * 22 20 19 24 24 C 1.36439 * 108.29700 * 359.72471 * 19 17 16 25 25 H 1.09000 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46972 * 299.99655 * 1 2 3 27 27 H 1.09004 * 109.46813 * 60.00017 * 1 2 3 28 28 H 1.08997 * 109.46972 * 240.00345 * 2 1 3 29 29 H 1.08995 * 109.46915 * 120.00140 * 2 1 3 30 30 H 1.08998 * 109.47615 * 300.00316 * 3 2 1 31 31 H 1.09005 * 109.47110 * 60.00022 * 3 2 1 32 32 H 0.96999 * 120.00054 * 179.97438 * 8 7 5 33 33 H 1.08000 * 125.80363 * 0.02562 * 16 15 13 34 34 H 1.09004 * 109.47172 * 180.02562 * 23 22 20 35 35 H 1.09008 * 109.46808 * 299.99477 * 23 22 20 36 36 H 1.08991 * 109.47195 * 59.99478 * 23 22 20 37 37 H 1.08003 * 126.49133 * 180.28874 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1894 1.5502 1.1822 6 1 4.8671 0.7665 1.4872 7 6 4.0117 2.6679 1.9888 8 7 4.5275 2.6948 3.1972 9 14 3.0397 4.1319 1.3553 10 1 1.6265 4.0162 1.7964 11 1 3.6255 5.3856 1.8943 12 1 3.0946 4.1578 -0.1284 13 6 4.1794 1.3366 -1.1615 14 8 3.5756 1.3389 -2.2174 15 6 5.6478 1.2180 -1.1529 16 6 6.4761 1.3440 -0.0524 17 7 7.7450 1.1688 -0.4548 18 1 8.5264 1.2061 0.1186 19 6 7.7613 0.9276 -1.8118 20 6 8.9561 0.6861 -2.6268 21 8 8.8469 0.4834 -3.8208 22 8 10.1763 0.6887 -2.0521 23 6 11.3142 0.4430 -2.9199 24 6 6.4747 0.9465 -2.2657 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 4.4038 3.4751 3.7601 33 1 6.1565 1.5478 0.9589 34 1 12.2320 0.4719 -2.3326 35 1 11.2115 -0.5376 -3.3848 36 1 11.3532 1.2096 -3.6937 37 1 6.1503 0.7871 -3.2834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431401737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:43 Heat of formation + Delta-G solvation = -89.575521 kcal Electronic energy + Delta-G solvation = -21946.272057 eV Core-core repulsion = 18496.198945 eV Total energy + Delta-G solvation = -3450.073112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.53972 -41.06814 -40.11297 -37.53446 -37.01218 -34.83592 -33.47186 -32.20967 -31.04188 -28.63791 -27.44617 -26.71619 -24.24443 -23.36723 -22.39073 -21.27103 -20.73439 -20.20334 -18.45225 -18.08524 -17.49934 -17.46071 -17.06818 -16.17949 -16.01344 -15.77154 -15.37161 -15.13659 -14.75846 -14.43650 -14.39902 -14.24134 -14.00900 -13.80201 -13.39305 -13.16615 -13.07474 -12.98656 -12.65500 -12.46128 -11.97816 -11.94714 -11.86647 -11.86535 -11.46985 -11.07420 -10.60955 -10.11514 -9.44584 -9.26604 -8.44463 -6.32054 0.17206 0.97240 1.26280 1.37835 1.49829 1.55060 1.93374 2.15732 2.24952 2.68763 2.76970 3.00495 3.85572 4.05594 4.14600 4.22791 4.29658 4.34071 4.38392 4.45176 4.49416 4.64880 4.69938 4.73883 4.92452 5.01444 5.07416 5.17119 5.18285 5.31238 5.41077 5.51341 5.68526 5.74661 6.14485 6.28472 6.48549 6.62548 7.01568 7.45777 7.86999 8.62846 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.005143 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.934517 B = 5443.375921 C = 6258.167698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.103 3.897 4 N -0.480 5.480 5 C -0.341 4.341 6 H 0.098 0.902 7 C 0.055 3.945 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.557 3.443 14 O -0.623 6.623 15 C -0.250 4.250 16 C 0.122 3.878 17 N -0.506 5.506 18 H 0.440 0.560 19 C -0.069 4.069 20 C 0.547 3.453 21 O -0.531 6.531 22 O -0.360 6.360 23 C 0.030 3.970 24 C -0.057 4.057 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.281 0.719 33 H 0.225 0.775 34 H 0.138 0.862 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -2.721 -2.076 8.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.020 4.020 4 N -0.201 5.201 5 C -0.469 4.469 6 H 0.115 0.885 7 C -0.152 4.152 8 N -0.523 5.523 9 Si 0.735 3.265 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.350 3.650 14 O -0.510 6.510 15 C -0.258 4.258 16 C -0.022 4.022 17 N -0.102 5.102 18 H 0.282 0.718 19 C -0.178 4.178 20 C 0.394 3.606 21 O -0.422 6.422 22 O -0.277 6.277 23 C -0.063 4.063 24 C -0.084 4.084 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.241 0.759 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.895 -2.682 -2.698 8.763 hybrid contribution -0.162 0.809 -0.130 0.836 sum 7.733 -1.872 -2.828 8.444 Atomic orbital electron populations 1.21673 0.93478 1.02676 1.02049 1.21704 0.97329 0.95975 1.01306 1.21706 0.81896 0.97971 1.00407 1.43551 1.04536 1.66650 1.05357 1.18905 1.26555 1.05299 0.96101 0.88460 1.25840 0.95919 0.98678 0.94731 1.69686 1.43966 1.31146 1.07483 0.86241 0.80365 0.80805 0.79079 1.18585 1.20574 1.20506 1.18147 0.86765 0.76868 0.83244 1.90586 1.71033 1.56961 1.32445 1.19577 0.93114 1.18604 0.94468 1.24634 0.81272 0.94641 1.01632 1.41952 1.09338 1.52051 1.06849 0.71786 1.18766 0.92002 1.22187 0.84809 1.19705 0.82789 0.72837 0.85272 1.90868 1.87139 1.47835 1.16321 1.86547 1.15414 1.82570 1.43132 1.23633 0.85266 1.02063 0.95292 1.21044 0.89958 0.98517 0.98881 0.90979 0.92050 0.92642 0.93598 0.91889 0.92896 0.91435 0.90832 0.75932 0.84375 0.91674 0.91751 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.12 -4.58 6.22 30.60 0.19 -4.39 16 3 C 0.10 4.39 3.99 86.38 0.34 4.74 16 4 N -0.48 -22.47 1.77 -639.34 -1.13 -23.60 16 5 C -0.34 -15.92 6.53 84.07 0.55 -15.37 16 6 H 0.10 4.62 6.33 -2.91 -0.02 4.61 16 7 C 0.06 2.61 5.35 84.93 0.45 3.06 16 8 N -0.89 -43.11 13.96 21.67 0.30 -42.80 16 9 Si 0.91 39.91 25.53 68.60 1.75 41.66 16 10 H -0.26 -10.90 7.08 99.48 0.70 -10.20 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 13 C 0.56 27.25 7.59 86.63 0.66 27.91 16 14 O -0.62 -33.40 16.56 -4.14 -0.07 -33.47 16 15 C -0.25 -10.71 6.04 -20.12 -0.12 -10.83 16 16 C 0.12 4.44 10.27 84.34 0.87 5.31 16 17 N -0.51 -14.86 6.01 -183.32 -1.10 -15.96 16 18 H 0.44 9.45 8.96 -92.71 -0.83 8.62 16 19 C -0.07 -2.32 7.02 39.97 0.28 -2.04 16 20 C 0.55 16.93 7.93 70.02 0.56 17.48 16 21 O -0.53 -19.00 16.65 19.51 0.32 -18.67 16 22 O -0.36 -8.56 10.58 -57.84 -0.61 -9.17 16 23 C 0.03 0.49 10.57 113.37 1.20 1.68 16 24 C -0.06 -2.28 10.38 22.59 0.23 -2.04 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.05 2.34 7.51 -2.39 -0.02 2.32 16 31 H 0.07 2.83 5.65 -2.38 -0.01 2.82 16 32 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 33 H 0.22 8.59 4.67 -2.91 -0.01 8.58 16 34 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -62.53 318.78 5.66 -56.87 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.27 Total: 22.95 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.92 Total: 22.21 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.93 Total: -82.37 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -0.36 Total: -61.31 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.75 Total: 41.66 kcal Total: -62.53 5.66 -56.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431401737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.703 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds