Wall clock time and date at job start Tue Mar 31 2020 01:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21493 * 120.00328 * 359.72056 * 14 13 3 16 16 C 1.48335 * 119.99563 * 179.72347 * 14 13 3 17 17 N 1.31596 * 127.15803 * 0.02638 * 16 14 13 18 18 O 1.21566 * 111.54654 * 179.97438 * 17 16 14 19 19 C 1.32808 * 111.51687 * 359.96121 * 18 17 16 20 20 C 1.35705 * 106.70562 * 359.80156 * 19 18 17 21 21 C 1.50046 * 123.86699 * 179.42621 * 20 19 18 22 22 O 1.43620 * 107.88164 * 345.87870 * 21 20 19 23 23 C 1.42999 * 114.37848 * 49.77179 * 22 21 20 24 24 C 1.50668 * 130.82796 * 180.19274 * 19 18 17 25 25 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 26 26 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 27 27 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 30 30 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 32 32 H 1.08997 * 109.95983 * 226.16901 * 21 20 19 33 33 H 1.08996 * 109.60652 * 105.39006 * 21 20 19 34 34 H 1.09009 * 109.39603 * 169.44633 * 23 22 21 35 35 H 1.08992 * 109.32819 * 49.66333 * 23 22 21 36 36 H 1.08996 * 109.82531 * 283.57681 * 24 19 18 37 37 H 1.09004 * 109.82278 * 44.50367 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5975 0.1468 -0.2350 11 1 6.3977 0.2174 -2.6511 12 1 6.4996 2.2810 -1.3822 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3427 2.6275 0.4346 16 6 0.0387 3.3173 2.6385 17 7 0.7620 3.4337 3.7317 18 8 0.1592 4.0270 4.6048 19 6 -1.0541 4.3861 4.2014 20 6 -1.1841 3.9521 2.9222 21 6 -2.4213 4.1452 2.0954 22 8 -3.4849 4.5359 2.9779 23 6 -3.1550 5.6123 3.8595 24 6 -2.1496 5.1323 4.9176 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0614 -2.9499 31 1 2.2722 2.1230 1.9978 32 1 -2.6821 3.2138 1.5929 33 1 -2.2489 4.9275 1.3562 34 1 -4.0600 5.9657 4.3539 35 1 -2.7146 6.4272 3.2850 36 1 -2.6466 4.4694 5.6258 37 1 -1.7299 5.9894 5.4442 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527608302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:53 Heat of formation + Delta-G solvation = -43.510058 kcal Electronic energy + Delta-G solvation = -22215.383328 eV Core-core repulsion = 18767.307765 eV Total energy + Delta-G solvation = -3448.075563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.31199 -40.82434 -39.86172 -37.12478 -35.26843 -34.47163 -34.14945 -32.84540 -31.58141 -29.17891 -27.67017 -25.93416 -25.02242 -24.56010 -22.38066 -21.74699 -21.00717 -19.33273 -19.06341 -18.46244 -17.59881 -17.33341 -17.06435 -16.53455 -16.34042 -16.20837 -15.87261 -15.16407 -14.72384 -14.62229 -14.51825 -14.00493 -13.77959 -13.59085 -13.23253 -13.00891 -12.82143 -12.70692 -12.67213 -12.25674 -12.14497 -12.02383 -11.69401 -11.46675 -11.21617 -11.14334 -10.90458 -10.59290 -10.27478 -9.84070 -8.21583 -6.39509 -0.02737 0.47000 1.42206 1.43901 1.51938 1.73973 2.07860 2.09033 2.40483 2.64478 2.94492 3.07748 3.47700 3.57651 3.74359 4.03883 4.18665 4.26591 4.35729 4.42789 4.46117 4.49803 4.66684 4.69982 4.82876 4.91515 4.98166 5.01940 5.18019 5.34310 5.38180 5.51650 5.68756 5.78444 6.01737 6.07379 6.61237 6.65754 6.91646 7.13709 7.33821 8.83738 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030748 B = 0.004259 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.402045 B = 6572.740375 C = 7097.603963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.010 0.990 5 C -0.557 4.557 6 H 0.066 0.934 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.971 3.029 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.272 1.272 13 N -0.689 5.689 14 C 0.581 3.419 15 O -0.553 6.553 16 C -0.021 4.021 17 N -0.353 5.353 18 O 0.144 5.856 19 C -0.016 4.016 20 C -0.222 4.222 21 C 0.148 3.852 22 O -0.387 6.387 23 C 0.050 3.950 24 C -0.062 4.062 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.402 0.598 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 10.406 15.313 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.595 4.595 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.795 3.205 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.337 5.337 14 C 0.365 3.635 15 O -0.431 6.431 16 C -0.178 4.178 17 N -0.055 5.055 18 O 0.070 5.930 19 C -0.081 4.081 20 C -0.228 4.228 21 C 0.071 3.929 22 O -0.306 6.306 23 C -0.026 4.026 24 C -0.100 4.100 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.862 9.746 14.696 20.711 hybrid contribution 1.129 -0.111 -0.636 1.301 sum -9.733 9.635 14.060 19.628 Atomic orbital electron populations 1.21692 0.96708 0.99547 1.00257 1.21809 0.94006 0.98725 1.01520 1.18553 0.94050 0.89421 0.80388 0.97211 1.21477 0.91184 1.39795 1.07012 0.91630 1.25716 1.03416 0.94037 0.94764 1.70009 1.37196 1.37805 1.09744 0.85418 0.78886 0.78468 0.77702 1.19142 1.20624 1.19752 1.46278 1.14404 1.54800 1.18205 1.17186 0.82711 0.78670 0.84981 1.90731 1.52192 1.60714 1.39435 1.22971 0.94538 1.04983 0.95298 1.74669 1.19569 1.12816 0.98473 1.84609 1.22867 1.51511 1.34022 1.24842 0.88253 1.00735 0.94300 1.21577 0.98197 1.04874 0.98151 1.20770 0.80841 1.01635 0.89633 1.88112 1.36436 1.54254 1.51765 1.23149 1.00566 0.88455 0.90468 1.21393 0.88912 1.00969 0.98730 0.94493 0.94649 0.93173 0.90215 0.94439 0.92291 0.76398 0.87935 0.90370 0.83373 0.91532 0.85697 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.14 5.45 30.59 0.17 -5.97 16 3 C 0.28 14.73 2.24 44.24 0.10 14.83 16 4 H 0.01 0.61 7.58 -2.39 -0.02 0.59 16 5 C -0.56 -30.41 8.73 25.60 0.22 -30.19 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -51.86 11.29 21.45 0.24 -51.62 16 9 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 N -0.69 -31.51 5.02 -448.52 -2.25 -33.76 16 14 C 0.58 25.33 6.41 86.93 0.56 25.88 16 15 O -0.55 -26.37 13.42 -3.69 -0.05 -26.42 16 16 C -0.02 -0.76 7.18 42.46 0.30 -0.46 16 17 N -0.35 -11.72 11.90 -48.98 -0.58 -12.30 16 18 O 0.14 3.75 11.17 81.76 0.91 4.66 16 19 C -0.02 -0.35 7.50 25.09 0.19 -0.16 16 20 C -0.22 -6.48 6.15 -20.06 -0.12 -6.60 16 21 C 0.15 3.93 6.67 71.03 0.47 4.40 16 22 O -0.39 -8.16 10.76 -148.98 -1.60 -9.76 16 23 C 0.05 0.56 6.77 72.20 0.49 1.04 16 24 C -0.06 -0.63 6.56 30.05 0.20 -0.43 16 25 H 0.04 1.65 5.63 -2.39 -0.01 1.64 16 26 H 0.03 1.70 7.84 -2.39 -0.02 1.68 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.08 4.41 5.95 -2.39 -0.01 4.40 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.40 17.09 8.31 -92.71 -0.77 16.32 16 32 H 0.10 3.08 8.00 -2.39 -0.02 3.06 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.15 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -68.15 308.18 2.67 -65.49 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.34 Total: 20.17 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 3.64 Total: -1.12 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -2.59 Total: -97.68 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.74 Total: -31.52 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -68.15 2.67 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527608302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.978 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds