Wall clock time and date at job start Tue Mar 31 2020 01:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21493 * 120.00387 * 0.02562 * 14 13 3 16 16 C 1.48331 * 120.00085 * 180.02562 * 14 13 3 17 17 N 1.31601 * 127.15762 * 0.02562 * 16 14 13 18 18 O 1.21558 * 111.55311 * 179.97438 * 17 16 14 19 19 C 1.32815 * 111.51429 * 359.96290 * 18 17 16 20 20 C 1.35710 * 106.70340 * 359.80678 * 19 18 17 21 21 C 1.50038 * 123.86283 * 179.42247 * 20 19 18 22 22 O 1.43622 * 107.88479 * 345.87961 * 21 20 19 23 23 C 1.42992 * 114.38179 * 49.76939 * 22 21 20 24 24 C 1.50670 * 130.82964 * 180.18983 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.09000 * 109.95997 * 226.15816 * 21 20 19 33 33 H 1.09007 * 109.60578 * 105.38884 * 21 20 19 34 34 H 1.09003 * 109.39481 * 169.44788 * 23 22 21 35 35 H 1.08995 * 109.33088 * 49.66869 * 23 22 21 36 36 H 1.09006 * 109.82251 * 283.57840 * 24 19 18 37 37 H 1.08999 * 109.82091 * 44.50329 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3406 2.6326 -0.4324 16 6 0.0426 3.3272 -2.6345 17 7 0.7656 3.4431 -3.7279 18 8 0.1645 4.0404 -4.5995 19 6 -1.0478 4.4018 -4.1950 20 6 -1.1823 3.9570 -2.9199 21 6 -2.4108 4.1704 -2.0853 22 8 -3.2151 5.1695 -2.7316 23 6 -3.4451 4.9328 -4.1229 24 6 -2.1441 5.1464 -4.9118 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 -2.1291 4.5110 -1.0890 33 1 -2.9697 3.2374 -2.0120 34 1 -4.2064 5.6230 -4.4865 35 1 -3.7892 3.9081 -4.2626 36 1 -1.9052 6.2093 -4.9500 37 1 -2.2566 4.7554 -5.9230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527608304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:56 Heat of formation + Delta-G solvation = -22.428706 kcal Electronic energy + Delta-G solvation = -22213.192222 eV Core-core repulsion = 18766.030815 eV Total energy + Delta-G solvation = -3447.161407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.09214 -39.18688 -38.91046 -35.24476 -33.97532 -33.35338 -32.42832 -31.10571 -30.49663 -27.26431 -26.52098 -24.43775 -24.09982 -22.80973 -21.08689 -20.10597 -19.33639 -18.00804 -17.86922 -17.03145 -16.26206 -15.95991 -15.42885 -15.35912 -15.01449 -14.60414 -14.39914 -13.84667 -13.79261 -13.20731 -13.00017 -12.72771 -12.26054 -11.89758 -11.61862 -11.51587 -11.35231 -11.29001 -11.00906 -10.88231 -10.38252 -10.35399 -10.24371 -9.99588 -9.71038 -9.45035 -9.22877 -9.11624 -8.54718 -7.96842 -6.16201 -4.25718 1.18943 1.67277 2.74375 3.23730 3.30286 3.32592 3.48131 3.61807 3.69410 4.18560 4.29937 4.41070 4.59801 4.68414 4.84839 5.00111 5.15529 5.17750 5.22832 5.37620 5.49625 5.59780 5.68786 5.94932 6.33248 6.39123 6.58390 6.80878 6.97774 7.10739 7.23725 7.31583 7.54300 7.65614 7.81682 8.01468 8.10663 8.52687 8.67920 8.92828 9.41114 10.89281 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.004252 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.113019 B = 6583.496077 C = 7089.122354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.580 3.420 15 O -0.529 6.529 16 C 0.008 3.992 17 N -0.337 5.337 18 O 0.126 5.874 19 C -0.040 4.040 20 C -0.201 4.201 21 C 0.142 3.858 22 O -0.376 6.376 23 C 0.061 3.939 24 C -0.066 4.066 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.025 0.975 28 H 0.103 0.897 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.395 0.605 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 7.310 -13.581 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.333 5.333 14 C 0.362 3.638 15 O -0.406 6.406 16 C -0.151 4.151 17 N -0.042 5.042 18 O 0.056 5.944 19 C -0.105 4.105 20 C -0.207 4.207 21 C 0.065 3.935 22 O -0.295 6.295 23 C -0.017 4.017 24 C -0.105 4.105 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.133 6.889 -12.867 18.356 hybrid contribution 0.954 -0.169 -0.147 0.980 sum -10.180 6.720 -13.014 17.837 Atomic orbital electron populations 1.21850 0.98321 0.98279 1.01114 1.21951 0.92649 0.99535 1.02576 1.18934 0.94620 0.89314 0.80308 0.92867 1.21211 0.90452 1.39307 1.06504 0.91968 1.24870 0.98771 0.94624 0.95264 1.69886 1.35228 1.37501 1.09291 0.86421 0.84620 0.77685 0.78262 1.20498 1.20993 1.19793 1.46484 1.13685 1.54044 1.19073 1.16857 0.83602 0.79360 0.83977 1.90757 1.51700 1.60082 1.38041 1.23393 0.92425 1.03228 0.96084 1.74688 1.18922 1.12031 0.98530 1.84638 1.22321 1.52299 1.35138 1.23950 0.88937 1.02481 0.95175 1.21362 0.98728 1.04257 0.96312 1.20987 0.85040 0.92372 0.95080 1.88123 1.70670 1.48910 1.21747 1.22715 0.94887 1.02360 0.81709 1.21004 0.89639 1.00261 0.99558 0.94575 0.92927 0.95595 0.87935 0.94872 0.92470 0.77158 0.85889 0.90439 0.87092 0.92146 0.87901 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.13 5.45 -26.74 -0.15 -3.27 16 3 C 0.27 6.84 2.24 -69.09 -0.15 6.68 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.34 8.73 -34.44 -0.30 -14.64 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.69 -15.13 5.02 -55.73 -0.28 -15.41 16 14 C 0.58 12.20 6.41 -12.11 -0.08 12.12 16 15 O -0.53 -12.03 13.43 5.37 0.07 -11.96 16 16 C 0.01 0.14 7.18 -82.90 -0.60 -0.46 16 17 N -0.34 -5.70 11.90 33.26 0.40 -5.30 16 18 O 0.13 1.78 11.17 20.05 0.22 2.01 16 19 C -0.04 -0.50 7.50 -35.23 -0.26 -0.76 16 20 C -0.20 -3.01 6.15 -104.93 -0.65 -3.66 16 21 C 0.14 1.89 6.67 35.69 0.24 2.13 16 22 O -0.38 -4.35 10.76 -35.23 -0.38 -4.73 16 23 C 0.06 0.46 6.77 37.49 0.25 0.71 16 24 C -0.07 -0.49 6.56 -27.57 -0.18 -0.67 16 25 H 0.04 0.78 5.65 -51.93 -0.29 0.49 16 26 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.10 2.73 5.95 -51.93 -0.31 2.43 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.40 8.18 8.31 -40.82 -0.34 7.84 16 32 H 0.12 1.77 8.00 -51.93 -0.42 1.35 16 33 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 308.22 15.07 4.64 4.64 Total: -1.00 -30.30 308.22 -6.02 -36.32 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.66 Total: 5.45 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.65 Total: -2.84 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.74 Total: -44.62 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.08 Total: -14.68 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.30 -6.02 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527608304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.894 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds