Wall clock time and date at job start Tue Mar 31 2020 01:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21493 * 120.00387 * 0.02562 * 14 13 3 16 16 C 1.48331 * 120.00085 * 180.02562 * 14 13 3 17 17 N 1.31601 * 127.15762 * 0.02562 * 16 14 13 18 18 O 1.21558 * 111.55311 * 179.97438 * 17 16 14 19 19 C 1.32815 * 111.51429 * 359.96290 * 18 17 16 20 20 C 1.35710 * 106.70340 * 359.80678 * 19 18 17 21 21 C 1.50038 * 123.86283 * 179.42247 * 20 19 18 22 22 O 1.43622 * 107.88479 * 345.87961 * 21 20 19 23 23 C 1.42992 * 114.38179 * 49.76939 * 22 21 20 24 24 C 1.50670 * 130.82964 * 180.18983 * 19 18 17 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 32 32 H 1.09000 * 109.95997 * 226.15816 * 21 20 19 33 33 H 1.09007 * 109.60578 * 105.38884 * 21 20 19 34 34 H 1.09003 * 109.39481 * 169.44788 * 23 22 21 35 35 H 1.08995 * 109.33088 * 49.66869 * 23 22 21 36 36 H 1.09006 * 109.82251 * 283.57840 * 24 19 18 37 37 H 1.08999 * 109.82091 * 44.50329 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3406 2.6326 -0.4324 16 6 0.0426 3.3272 -2.6345 17 7 0.7656 3.4431 -3.7279 18 8 0.1645 4.0404 -4.5995 19 6 -1.0478 4.4018 -4.1950 20 6 -1.1823 3.9570 -2.9199 21 6 -2.4108 4.1704 -2.0853 22 8 -3.2151 5.1695 -2.7316 23 6 -3.4451 4.9328 -4.1229 24 6 -2.1441 5.1464 -4.9118 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 2.2720 2.1232 -1.9977 32 1 -2.1291 4.5110 -1.0890 33 1 -2.9697 3.2374 -2.0120 34 1 -4.2064 5.6230 -4.4865 35 1 -3.7892 3.9081 -4.2626 36 1 -1.9052 6.2093 -4.9500 37 1 -2.2566 4.7554 -5.9230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527608304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:55 Heat of formation + Delta-G solvation = -43.684288 kcal Electronic energy + Delta-G solvation = -22214.113933 eV Core-core repulsion = 18766.030815 eV Total energy + Delta-G solvation = -3448.083119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.31243 -40.82285 -39.86201 -37.12661 -35.26830 -34.47221 -34.14948 -32.84433 -31.58139 -29.17985 -27.67037 -25.93539 -25.02034 -24.56264 -22.37947 -21.74592 -21.00686 -19.32164 -19.07895 -18.46837 -17.58692 -17.34947 -17.05115 -16.50828 -16.37235 -16.20134 -15.87481 -15.18767 -14.71046 -14.59679 -14.50261 -14.04506 -13.78900 -13.58308 -13.23872 -12.98438 -12.82910 -12.73378 -12.66952 -12.24555 -12.14324 -12.01332 -11.68718 -11.46947 -11.21758 -11.14227 -10.90297 -10.59786 -10.27433 -9.84127 -8.22015 -6.39773 -0.02717 0.46988 1.42114 1.42182 1.53170 1.74003 2.06835 2.10143 2.40197 2.64558 2.94587 3.07456 3.47787 3.57666 3.74422 4.03894 4.18696 4.26604 4.35812 4.42920 4.46272 4.49944 4.66858 4.69961 4.82920 4.91659 4.98165 5.01957 5.17975 5.34517 5.38206 5.51753 5.68830 5.78487 6.02044 6.07405 6.61248 6.65709 6.91669 7.13673 7.33651 8.83524 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030826 B = 0.004252 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.113019 B = 6583.496077 C = 7089.122354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.009 0.991 5 C -0.556 4.556 6 H 0.065 0.935 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.971 3.029 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.265 1.265 13 N -0.689 5.689 14 C 0.581 3.419 15 O -0.553 6.553 16 C -0.021 4.021 17 N -0.353 5.353 18 O 0.144 5.856 19 C -0.016 4.016 20 C -0.222 4.222 21 C 0.148 3.852 22 O -0.388 6.388 23 C 0.050 3.950 24 C -0.063 4.063 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.402 0.598 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 8.205 -16.185 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.594 4.594 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.795 3.205 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.189 1.189 13 N -0.337 5.337 14 C 0.365 3.635 15 O -0.431 6.431 16 C -0.178 4.178 17 N -0.055 5.055 18 O 0.070 5.930 19 C -0.081 4.081 20 C -0.228 4.228 21 C 0.071 3.929 22 O -0.306 6.306 23 C -0.026 4.026 24 C -0.100 4.100 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.718 7.782 -15.482 20.918 hybrid contribution 1.025 -0.355 0.557 1.220 sum -10.692 7.427 -14.925 19.805 Atomic orbital electron populations 1.21687 0.96664 0.99562 1.00260 1.21798 0.94055 0.98641 1.01533 1.18560 0.94045 0.89481 0.80381 0.97265 1.21508 0.91208 1.39679 1.06993 0.91659 1.25716 1.03410 0.94045 0.94779 1.70017 1.37119 1.37911 1.09724 0.85364 0.78913 0.77697 0.78503 1.20254 1.20420 1.18897 1.46277 1.14548 1.54643 1.18214 1.17185 0.82731 0.78651 0.84979 1.90731 1.52193 1.60763 1.39392 1.22969 0.94312 1.05223 0.95288 1.74666 1.19551 1.12749 0.98565 1.84609 1.23059 1.51228 1.34107 1.24845 0.88492 1.00378 0.94423 1.21576 0.98355 1.04968 0.97887 1.20771 0.84934 0.92836 0.94333 1.88112 1.70039 1.48284 1.24197 1.23147 0.95875 1.04094 0.79503 1.21395 0.87094 1.00813 1.00717 0.94428 0.94709 0.93116 0.90253 0.94369 0.92300 0.76402 0.88077 0.90203 0.83405 0.91433 0.85781 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.93 16 3 C 0.28 14.70 2.24 44.24 0.10 14.80 16 4 H 0.01 0.58 7.58 -2.39 -0.02 0.56 16 5 C -0.56 -30.43 8.73 25.60 0.22 -30.20 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -51.90 11.29 21.45 0.24 -51.65 16 9 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 13 N -0.69 -31.51 5.02 -448.53 -2.25 -33.76 16 14 C 0.58 25.32 6.41 86.93 0.56 25.88 16 15 O -0.55 -26.38 13.43 -3.69 -0.05 -26.43 16 16 C -0.02 -0.76 7.18 42.46 0.30 -0.46 16 17 N -0.35 -11.72 11.90 -48.98 -0.58 -12.30 16 18 O 0.14 3.75 11.17 81.72 0.91 4.66 16 19 C -0.02 -0.35 7.50 25.09 0.19 -0.16 16 20 C -0.22 -6.47 6.15 -20.06 -0.12 -6.60 16 21 C 0.15 3.93 6.67 71.03 0.47 4.40 16 22 O -0.39 -8.19 10.76 -148.98 -1.60 -9.80 16 23 C 0.05 0.55 6.77 72.20 0.49 1.04 16 24 C -0.06 -0.63 6.56 30.05 0.20 -0.43 16 25 H 0.04 1.66 5.65 -2.39 -0.01 1.65 16 26 H 0.03 1.66 7.85 -2.39 -0.02 1.64 16 27 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.08 4.38 5.95 -2.39 -0.01 4.36 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.40 17.10 8.31 -92.71 -0.77 16.32 16 32 H 0.10 3.06 8.00 -2.39 -0.02 3.05 16 33 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -68.33 308.22 2.67 -65.66 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.34 Total: 19.91 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 3.64 Total: -1.05 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -2.59 Total: -97.72 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.74 Total: -31.56 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -68.33 2.67 -65.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527608304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.972 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds