Wall clock time and date at job start Tue Mar 31 2020 01:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 N 1.46498 * 109.47462 * 120.00303 * 2 1 3 5 5 C 1.46501 * 119.99989 * 294.26019 * 4 2 1 6 6 C 1.50702 * 109.47013 * 268.52619 * 5 4 2 7 7 H 1.07999 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99636 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99781 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00539 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47386 * 89.99547 * 10 8 6 12 12 H 1.48496 * 109.47366 * 210.00292 * 10 8 6 13 13 H 1.48501 * 109.46767 * 330.00018 * 10 8 6 14 14 C 1.34773 * 120.00010 * 114.25657 * 4 2 1 15 15 O 1.21595 * 120.00172 * 355.34470 * 14 4 2 16 16 C 1.47484 * 120.00021 * 175.61491 * 14 4 2 17 17 C 1.37810 * 126.77461 * 351.19912 * 16 14 4 18 18 O 1.33499 * 108.34662 * 179.86099 * 17 16 14 19 19 C 1.34885 * 109.88281 * 0.41213 * 18 17 16 20 20 C 1.46778 * 125.65445 * 179.74373 * 19 18 17 21 21 N 1.34777 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.21677 * 120.00434 * 179.97438 * 20 19 18 23 23 C 1.36058 * 108.69240 * 359.74190 * 19 18 17 24 24 H 1.08993 * 109.46743 * 299.99419 * 1 2 3 25 25 H 1.09000 * 109.46907 * 60.00034 * 1 2 3 26 26 H 1.08999 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47110 * 240.00515 * 2 1 3 28 28 H 1.08998 * 109.47064 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47365 * 300.00526 * 3 2 1 30 30 H 1.09005 * 109.46776 * 60.00310 * 3 2 1 31 31 H 1.09004 * 109.46747 * 28.52478 * 5 4 2 32 32 H 1.09002 * 109.47138 * 148.52162 * 5 4 2 33 33 H 0.97002 * 120.00340 * 179.97438 * 9 8 6 34 34 H 1.08005 * 125.82783 * 359.97438 * 17 16 14 35 35 H 0.97005 * 119.99779 * 359.97438 * 21 20 19 36 36 H 0.97000 * 120.00557 * 179.97438 * 21 20 19 37 37 H 1.08001 * 126.68638 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 1.7712 -0.1212 2.5230 6 6 2.9249 0.7673 2.9113 7 1 3.7591 0.8946 2.2373 8 6 2.9159 1.4166 4.1275 9 7 3.9230 2.1916 4.4666 10 14 1.4735 1.1958 5.2937 11 1 1.7351 0.0426 6.1919 12 1 1.3008 2.4268 6.1060 13 1 0.2378 0.9425 4.5101 14 6 2.6952 -1.8499 1.0757 15 8 2.8273 -2.3662 -0.0172 16 6 3.2705 -2.4955 2.2705 17 6 3.3490 -1.9626 3.5390 18 8 3.9333 -2.8599 4.3363 19 6 4.2502 -3.9641 3.6294 20 6 4.9097 -5.1618 4.1633 21 7 5.2517 -5.2187 5.4657 22 8 5.1477 -6.1033 3.4302 23 6 3.8571 -3.7838 2.3394 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.8525 0.4650 2.5014 32 1 1.6714 -0.9263 3.2511 33 1 3.9166 2.6488 5.3221 34 1 2.9962 -0.9865 3.8376 35 1 5.0623 -4.4679 6.0501 36 1 5.6872 -6.0102 5.8188 37 1 3.9699 -4.4857 1.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546088157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:11 Heat of formation + Delta-G solvation = -45.965643 kcal Electronic energy + Delta-G solvation = -22518.508050 eV Core-core repulsion = 19070.326005 eV Total energy + Delta-G solvation = -3448.182046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38896 -39.31816 -38.95260 -35.99813 -33.91132 -33.52503 -32.65449 -31.62301 -29.27575 -28.30337 -26.69529 -23.67411 -23.34285 -22.80409 -20.57876 -20.18424 -18.93026 -17.79704 -17.30319 -16.83992 -16.48154 -16.05054 -15.53095 -15.23621 -14.68462 -14.25704 -14.08700 -13.92884 -13.54867 -13.20976 -12.89700 -12.80135 -12.53463 -12.37319 -11.89567 -11.73831 -11.31415 -11.13931 -10.91664 -10.83558 -10.43860 -10.35294 -10.21517 -9.81116 -9.80108 -9.61952 -9.34238 -9.04838 -8.29396 -7.89503 -6.52188 -4.56138 1.34463 2.08698 2.94803 2.99595 3.05959 3.08668 3.27596 3.49919 3.82790 3.94435 3.97107 4.75312 5.01546 5.06461 5.32242 5.47741 5.58666 5.71195 5.79321 5.87666 6.02376 6.06572 6.17749 6.28511 6.30716 6.40878 6.47251 6.55710 6.66409 6.70392 6.94884 7.01163 7.08032 7.27852 7.39693 7.92615 8.15823 8.19471 8.59590 8.83648 9.01888 10.58047 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.007222 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.925756 B = 3875.980249 C = 5300.892482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 C -0.152 4.152 4 N -0.582 5.582 5 C 0.186 3.814 6 C -0.550 4.550 7 H 0.090 0.910 8 C 0.078 3.922 9 N -0.868 5.868 10 Si 0.852 3.148 11 H -0.265 1.265 12 H -0.275 1.275 13 H -0.258 1.258 14 C 0.592 3.408 15 O -0.565 6.565 16 C -0.257 4.257 17 C 0.065 3.935 18 O -0.163 6.163 19 C -0.127 4.127 20 C 0.616 3.384 21 N -0.847 5.847 22 O -0.532 6.532 23 C -0.056 4.056 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.272 0.728 34 H 0.268 0.732 35 H 0.408 0.592 36 H 0.405 0.595 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -5.304 2.351 6.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 C -0.210 4.210 4 N -0.312 5.312 5 C 0.065 3.935 6 C -0.588 4.588 7 H 0.108 0.892 8 C -0.129 4.129 9 N -0.503 5.503 10 Si 0.677 3.323 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.182 1.182 14 C 0.382 3.618 15 O -0.447 6.447 16 C -0.261 4.261 17 C -0.007 4.007 18 O -0.057 6.057 19 C -0.178 4.178 20 C 0.402 3.598 21 N -0.410 5.410 22 O -0.411 6.411 23 C -0.077 4.077 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.282 0.718 35 H 0.237 0.763 36 H 0.236 0.764 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.386 -5.919 1.643 7.014 hybrid contribution -0.546 0.303 1.105 1.269 sum -3.932 -5.616 2.748 7.386 Atomic orbital electron populations 1.22145 0.95866 1.01746 1.01993 1.20922 0.93365 0.93711 0.88513 1.22077 1.02035 0.94996 1.01857 1.47746 1.53759 1.21554 1.08162 1.20287 0.98453 0.94450 0.80320 1.21517 1.05646 1.27585 1.04040 0.89248 1.24992 0.95677 0.94402 0.97807 1.69867 1.30026 1.27864 1.22563 0.87207 0.83773 0.79366 0.81999 1.18988 1.20034 1.18173 1.17161 0.77405 0.80295 0.86982 1.90684 1.61603 1.64756 1.27641 1.20615 1.12773 0.97264 0.95477 1.28487 0.89477 0.93818 0.88873 1.84017 1.59720 1.22653 1.39357 1.21596 1.13757 0.90153 0.92269 1.16527 0.77014 0.84069 0.82155 1.43667 1.64112 1.22979 1.10253 1.90891 1.55515 1.36273 1.58381 1.21788 0.94643 0.95673 0.95599 0.92173 0.91993 0.92821 0.89140 0.92188 0.93096 0.90707 0.93743 0.94942 0.91713 0.71753 0.76309 0.76356 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.27 37.16 0.34 -1.99 16 2 C 0.14 2.42 3.22 -67.93 -0.22 2.20 16 3 C -0.15 -2.57 8.44 37.16 0.31 -2.26 16 4 N -0.58 -11.59 2.38 -168.70 -0.40 -11.99 16 5 C 0.19 3.74 3.00 -5.19 -0.02 3.72 16 6 C -0.55 -12.63 6.35 -34.44 -0.22 -12.85 16 7 H 0.09 2.36 7.98 -52.49 -0.42 1.94 16 8 C 0.08 1.84 5.09 -17.82 -0.09 1.75 16 9 N -0.87 -22.40 13.96 55.43 0.77 -21.63 16 10 Si 0.85 17.08 26.92 -169.99 -4.58 12.50 16 11 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.26 -4.91 6.54 56.52 0.37 -4.54 16 14 C 0.59 12.71 7.66 -12.49 -0.10 12.62 16 15 O -0.57 -13.20 16.30 5.28 0.09 -13.11 16 16 C -0.26 -5.20 5.97 -104.95 -0.63 -5.83 16 17 C 0.06 1.26 9.56 30.58 0.29 1.55 16 18 O -0.16 -2.86 10.33 6.18 0.06 -2.80 16 19 C -0.13 -2.21 7.09 -36.91 -0.26 -2.47 16 20 C 0.62 9.59 8.06 -12.81 -0.10 9.49 16 21 N -0.85 -9.09 8.87 30.28 0.27 -8.82 16 22 O -0.53 -9.78 17.68 5.21 0.09 -9.69 16 23 C -0.06 -1.05 10.42 -39.03 -0.41 -1.46 16 24 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.66 6.95 -51.93 -0.36 1.30 16 28 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.36 6.97 -51.93 -0.36 1.00 16 31 H 0.04 0.87 5.73 -51.93 -0.30 0.57 16 32 H 0.03 0.64 4.32 -51.93 -0.22 0.42 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.27 5.40 2.32 -52.48 -0.12 5.28 16 35 H 0.41 3.70 8.57 -40.82 -0.35 3.35 16 36 H 0.41 3.36 8.93 -40.82 -0.36 2.99 16 37 H 0.16 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -28.76 308.88 -4.26 -33.02 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.14 Total: 13.40 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.09 Total: 4.46 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.64 Total: -42.44 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.24 Total: -25.60 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -4.58 Total: 12.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.76 -4.26 -33.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546088157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.942 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds