Wall clock time and date at job start Tue Mar 31 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 N 1.46498 * 109.47462 * 120.00303 * 2 1 3 5 5 C 1.46501 * 119.99989 * 294.26019 * 4 2 1 6 6 C 1.50702 * 109.47013 * 268.52619 * 5 4 2 7 7 H 1.07999 * 119.99907 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99636 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99781 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00539 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47386 * 89.99547 * 10 8 6 12 12 H 1.48496 * 109.47366 * 210.00292 * 10 8 6 13 13 H 1.48501 * 109.46767 * 330.00018 * 10 8 6 14 14 C 1.34773 * 120.00010 * 114.25657 * 4 2 1 15 15 O 1.21595 * 120.00172 * 355.34470 * 14 4 2 16 16 C 1.47484 * 120.00021 * 175.61491 * 14 4 2 17 17 C 1.37810 * 126.77461 * 351.19912 * 16 14 4 18 18 O 1.33499 * 108.34662 * 179.86099 * 17 16 14 19 19 C 1.34885 * 109.88281 * 0.41213 * 18 17 16 20 20 C 1.46778 * 125.65445 * 179.74373 * 19 18 17 21 21 N 1.34777 * 119.99905 * 359.97438 * 20 19 18 22 22 O 1.21677 * 120.00434 * 179.97438 * 20 19 18 23 23 C 1.36058 * 108.69240 * 359.74190 * 19 18 17 24 24 H 1.08993 * 109.46743 * 299.99419 * 1 2 3 25 25 H 1.09000 * 109.46907 * 60.00034 * 1 2 3 26 26 H 1.08999 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47110 * 240.00515 * 2 1 3 28 28 H 1.08998 * 109.47064 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47365 * 300.00526 * 3 2 1 30 30 H 1.09005 * 109.46776 * 60.00310 * 3 2 1 31 31 H 1.09004 * 109.46747 * 28.52478 * 5 4 2 32 32 H 1.09002 * 109.47138 * 148.52162 * 5 4 2 33 33 H 0.97002 * 120.00340 * 179.97438 * 9 8 6 34 34 H 1.08005 * 125.82783 * 359.97438 * 17 16 14 35 35 H 0.97005 * 119.99779 * 359.97438 * 21 20 19 36 36 H 0.97000 * 120.00557 * 179.97438 * 21 20 19 37 37 H 1.08001 * 126.68638 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 1.7712 -0.1212 2.5230 6 6 2.9249 0.7673 2.9113 7 1 3.7591 0.8946 2.2373 8 6 2.9159 1.4166 4.1275 9 7 3.9230 2.1916 4.4666 10 14 1.4735 1.1958 5.2937 11 1 1.7351 0.0426 6.1919 12 1 1.3008 2.4268 6.1060 13 1 0.2378 0.9425 4.5101 14 6 2.6952 -1.8499 1.0757 15 8 2.8273 -2.3662 -0.0172 16 6 3.2705 -2.4955 2.2705 17 6 3.3490 -1.9626 3.5390 18 8 3.9333 -2.8599 4.3363 19 6 4.2502 -3.9641 3.6294 20 6 4.9097 -5.1618 4.1633 21 7 5.2517 -5.2187 5.4657 22 8 5.1477 -6.1033 3.4302 23 6 3.8571 -3.7838 2.3394 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 0.8525 0.4650 2.5014 32 1 1.6714 -0.9263 3.2511 33 1 3.9166 2.6488 5.3221 34 1 2.9962 -0.9865 3.8376 35 1 5.0623 -4.4679 6.0501 36 1 5.6872 -6.0102 5.8188 37 1 3.9699 -4.4857 1.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546088157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:10 Heat of formation + Delta-G solvation = -67.332564 kcal Electronic energy + Delta-G solvation = -22519.434590 eV Core-core repulsion = 19070.326005 eV Total energy + Delta-G solvation = -3449.108585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.87815 -40.88571 -40.28104 -37.63491 -35.37343 -34.87236 -34.24247 -33.15490 -30.73825 -30.03465 -27.98836 -25.19184 -24.83463 -24.46122 -22.04639 -21.56545 -20.34894 -19.18306 -19.10666 -18.06372 -18.02196 -17.50813 -17.01555 -16.77246 -16.29438 -15.73093 -15.48773 -15.37441 -14.97483 -14.77061 -14.54050 -14.27730 -13.95630 -13.93167 -13.37334 -13.07221 -12.82113 -12.68765 -12.40528 -12.34248 -11.95575 -11.71640 -11.67998 -11.54327 -11.17492 -11.03358 -10.88936 -10.82201 -9.80180 -9.51502 -8.34431 -6.43541 -0.08621 0.51121 1.39406 1.45171 1.51606 1.55326 1.93454 2.06338 2.29266 2.31461 2.55493 2.97212 3.47819 3.75983 3.83463 4.05673 4.25451 4.32044 4.38293 4.40921 4.51695 4.69733 4.83637 4.85340 4.90338 4.99774 5.03533 5.06919 5.31269 5.37197 5.50625 5.52418 5.72751 5.77236 6.13755 6.23896 6.51348 6.68133 7.07905 7.12308 7.23945 8.79464 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.007222 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.925756 B = 3875.980249 C = 5300.892482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.128 3.872 3 C -0.142 4.142 4 N -0.581 5.581 5 C 0.191 3.809 6 C -0.540 4.540 7 H 0.043 0.957 8 C 0.035 3.965 9 N -0.919 5.919 10 Si 0.908 3.092 11 H -0.248 1.248 12 H -0.282 1.282 13 H -0.235 1.235 14 C 0.582 3.418 15 O -0.592 6.592 16 C -0.270 4.270 17 C 0.061 3.939 18 O -0.151 6.151 19 C -0.110 4.110 20 C 0.618 3.382 21 N -0.817 5.817 22 O -0.561 6.561 23 C -0.076 4.076 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.274 0.726 34 H 0.263 0.737 35 H 0.420 0.580 36 H 0.422 0.578 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -6.011 3.654 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.026 3.974 3 C -0.199 4.199 4 N -0.310 5.310 5 C 0.070 3.930 6 C -0.578 4.578 7 H 0.061 0.939 8 C -0.167 4.167 9 N -0.556 5.556 10 Si 0.729 3.271 11 H -0.172 1.172 12 H -0.208 1.208 13 H -0.158 1.158 14 C 0.373 3.627 15 O -0.476 6.476 16 C -0.274 4.274 17 C -0.011 4.011 18 O -0.044 6.044 19 C -0.161 4.161 20 C 0.402 3.598 21 N -0.381 5.381 22 O -0.442 6.442 23 C -0.097 4.097 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.277 0.723 35 H 0.251 0.749 36 H 0.256 0.744 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.058 -6.623 2.982 8.851 hybrid contribution 0.078 0.508 0.674 0.847 sum -4.979 -6.115 3.656 8.693 Atomic orbital electron populations 1.22076 0.92947 1.02180 1.03595 1.21178 0.95662 0.93324 0.87241 1.21981 1.00073 0.95018 1.02862 1.47887 1.53139 1.21093 1.08927 1.20236 0.97646 0.94426 0.80717 1.21392 1.05161 1.27980 1.03253 0.93900 1.25684 0.98058 0.93734 0.99267 1.70007 1.32550 1.29690 1.23379 0.86309 0.81151 0.79522 0.80139 1.17179 1.20751 1.15805 1.17448 0.77461 0.80745 0.87079 1.90654 1.62743 1.65619 1.28592 1.20667 1.13321 0.97987 0.95415 1.28151 0.90327 0.93959 0.88703 1.84009 1.59199 1.22423 1.38766 1.21926 1.12108 0.90242 0.91803 1.16356 0.77120 0.82931 0.83372 1.43439 1.62166 1.23981 1.08476 1.90891 1.56869 1.36916 1.59514 1.21855 0.95817 0.95500 0.96565 0.91825 0.89113 0.92955 0.90181 0.95122 0.89719 0.91940 0.92171 0.93481 0.91691 0.72310 0.74872 0.74384 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.27 71.98 0.67 -3.38 16 2 C 0.13 4.43 3.22 44.99 0.14 4.57 16 3 C -0.14 -4.76 8.44 71.98 0.61 -4.16 16 4 N -0.58 -23.11 2.38 -805.91 -1.92 -25.02 16 5 C 0.19 7.49 3.00 85.63 0.26 7.74 16 6 C -0.54 -25.12 6.35 25.60 0.16 -24.96 16 7 H 0.04 2.37 7.98 -2.91 -0.02 2.35 16 8 C 0.04 1.65 5.09 84.65 0.43 2.08 16 9 N -0.92 -48.41 13.96 21.45 0.30 -48.11 16 10 Si 0.91 33.73 26.92 68.60 1.85 35.57 16 11 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 12 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 13 H -0.24 -7.85 6.54 99.48 0.65 -7.20 16 14 C 0.58 25.35 7.66 86.68 0.66 26.01 16 15 O -0.59 -28.23 16.30 -4.01 -0.07 -28.30 16 16 C -0.27 -10.95 5.97 -20.08 -0.12 -11.06 16 17 C 0.06 2.31 9.56 67.72 0.65 2.95 16 18 O -0.15 -5.04 10.33 -0.79 -0.01 -5.05 16 19 C -0.11 -3.67 7.09 24.00 0.17 -3.50 16 20 C 0.62 18.02 8.06 86.48 0.70 18.72 16 21 N -0.82 -15.08 8.87 -176.32 -1.56 -16.64 16 22 O -0.56 -19.88 17.68 -4.28 -0.08 -19.95 16 23 C -0.08 -2.87 10.42 22.62 0.24 -2.63 16 24 H 0.06 1.67 6.91 -2.39 -0.02 1.66 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 2.94 6.95 -2.38 -0.02 2.92 16 28 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 2.25 6.97 -2.38 -0.02 2.23 16 31 H 0.06 2.20 5.73 -2.39 -0.01 2.19 16 32 H 0.05 1.76 4.32 -2.39 -0.01 1.75 16 33 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.26 10.38 2.32 -2.91 -0.01 10.38 16 35 H 0.42 6.19 8.57 -92.70 -0.79 5.40 16 36 H 0.42 5.61 8.93 -92.71 -0.83 4.78 16 37 H 0.16 6.04 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -63.70 308.88 2.55 -61.15 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.53 Total: 33.96 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 4.56 Total: 12.39 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -3.18 Total: -89.78 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -0.15 Total: -53.30 kcal Atomic # 14 Polarization: 33.73 SS G_CDS: 1.85 Total: 35.57 kcal Total: -63.70 2.55 -61.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546088157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.181 kcal (2) G-P(sol) polarization free energy of solvation -63.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds