Wall clock time and date at job start Tue Mar 31 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 N 1.46499 * 109.46664 * 119.99747 * 2 1 3 5 5 C 1.46499 * 120.00074 * 294.96982 * 4 2 1 6 6 C 1.50702 * 109.47174 * 262.62516 * 5 4 2 7 7 H 1.08005 * 119.99490 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00347 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00071 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00054 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47060 * 120.00006 * 10 8 6 13 13 H 1.48502 * 109.47150 * 240.00142 * 10 8 6 14 14 C 1.34776 * 120.00042 * 114.96838 * 4 2 1 15 15 O 1.21513 * 120.00120 * 2.94850 * 14 4 2 16 16 C 1.48172 * 119.99998 * 182.95423 * 14 4 2 17 17 C 1.38971 * 119.66399 * 173.12700 * 16 14 4 18 18 C 1.39379 * 119.10732 * 180.02562 * 17 16 14 19 19 O 1.35756 * 120.77753 * 179.97438 * 18 17 16 20 20 C 1.38953 * 118.44272 * 359.97438 * 18 17 16 21 21 C 1.38986 * 119.24676 * 0.25082 * 20 18 17 22 22 O 1.35673 * 119.58542 * 179.72957 * 21 20 18 23 23 N 1.32020 * 120.83595 * 359.50261 * 21 20 18 24 24 H 1.08997 * 109.47268 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.46531 * 60.00025 * 1 2 3 26 26 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47268 * 239.99698 * 2 1 3 28 28 H 1.09006 * 109.46645 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47114 * 299.99296 * 3 2 1 30 30 H 1.08997 * 109.47304 * 59.99720 * 3 2 1 31 31 H 1.08995 * 109.47456 * 22.62427 * 5 4 2 32 32 H 1.09005 * 109.47505 * 142.63277 * 5 4 2 33 33 H 0.96997 * 119.99573 * 179.97438 * 9 8 6 34 34 H 1.08004 * 120.44696 * 359.97083 * 17 16 14 35 35 H 0.96694 * 114.00258 * 270.02314 * 19 18 17 36 36 H 1.07998 * 120.37437 * 179.97438 * 20 18 17 37 37 H 0.96694 * 114.00144 * 89.99706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7574 -0.1290 2.5239 6 6 2.9613 0.6519 2.9845 7 1 3.8333 0.7231 2.3512 8 6 2.9491 1.2762 4.2137 9 7 1.8871 1.1899 4.9846 10 14 4.4411 2.2448 4.7841 11 1 5.4966 2.1879 3.7411 12 1 4.0529 3.6587 5.0197 13 1 4.9601 1.6572 6.0453 14 6 2.7074 -1.8425 1.0753 15 8 2.9701 -2.2804 -0.0273 16 6 3.1445 -2.5750 2.2868 17 6 3.7270 -3.8303 2.1589 18 6 4.1334 -4.5093 3.3062 19 8 4.7057 -5.7373 3.2207 20 6 3.9391 -3.8997 4.5397 21 6 3.3453 -2.6441 4.5907 22 8 3.1472 -2.0451 5.7917 23 7 2.9756 -2.0250 3.4848 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.8923 0.5322 2.4753 32 1 1.5579 -0.9373 3.2276 33 1 1.8787 1.6289 5.8495 34 1 3.8622 -4.2741 1.1835 35 1 4.0743 -6.4688 3.2555 36 1 4.2419 -4.3980 5.4488 37 1 3.8858 -1.4927 6.0823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597037813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:05 Heat of formation + Delta-G solvation = -58.073015 kcal Electronic energy + Delta-G solvation = -22948.523524 eV Core-core repulsion = 19499.816463 eV Total energy + Delta-G solvation = -3448.707061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48804 -38.90485 -37.67711 -36.08070 -35.70667 -32.87144 -31.63022 -30.46300 -29.90406 -27.13200 -26.54523 -24.47100 -22.95058 -22.75491 -21.17265 -19.23039 -17.93878 -17.50362 -16.98356 -16.38781 -15.84666 -15.68093 -15.45581 -14.70902 -14.57932 -14.27734 -14.13946 -13.51892 -13.01726 -12.79211 -12.66427 -12.24207 -12.06644 -11.66217 -11.61268 -11.42323 -11.14124 -10.93409 -10.84298 -10.73813 -10.67400 -10.34346 -9.89487 -9.58153 -9.44931 -9.24758 -8.68361 -8.54000 -8.07389 -7.59093 -5.96026 -3.93665 0.99034 1.36831 3.21598 3.23362 3.34195 3.39304 3.61721 4.04469 4.08181 4.41276 4.48202 4.95182 5.17477 5.30316 5.38635 5.47303 5.69698 5.70239 5.75111 5.85121 6.00638 6.12131 6.19244 6.24697 6.37733 6.43408 6.56019 6.75385 6.91651 7.03146 7.51297 7.57484 7.78799 7.91469 8.02239 8.29675 8.35922 8.39638 8.90515 9.07458 9.63302 11.11658 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.009465 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.955271 B = 2957.607591 C = 4594.889201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.131 3.869 3 C -0.151 4.151 4 N -0.566 5.566 5 C 0.228 3.772 6 C -0.491 4.491 7 H 0.050 0.950 8 C 0.069 3.931 9 N -0.880 5.880 10 Si 0.877 3.123 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.565 3.435 15 O -0.571 6.571 16 C 0.123 3.877 17 C -0.160 4.160 18 C 0.141 3.859 19 O -0.491 6.491 20 C -0.206 4.206 21 C 0.320 3.680 22 O -0.468 6.468 23 N -0.399 5.399 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.258 0.742 34 H 0.148 0.852 35 H 0.393 0.607 36 H 0.141 0.859 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -7.995 -2.017 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.208 4.208 4 N -0.294 5.294 5 C 0.109 3.891 6 C -0.531 4.531 7 H 0.068 0.932 8 C -0.133 4.133 9 N -0.519 5.519 10 Si 0.705 3.295 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.351 3.649 15 O -0.453 6.453 16 C -0.016 4.016 17 C -0.181 4.181 18 C 0.089 3.911 19 O -0.301 6.301 20 C -0.228 4.228 21 C 0.139 3.861 22 O -0.275 6.275 23 N -0.121 5.121 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.250 0.750 36 H 0.158 0.842 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.163 -7.263 -2.338 7.631 hybrid contribution 1.357 -0.105 0.741 1.550 sum 1.520 -7.368 -1.597 7.690 Atomic orbital electron populations 1.22126 0.95650 1.01656 1.02136 1.20966 0.93572 0.93737 0.88970 1.22033 1.01602 0.95326 1.01878 1.48386 1.50328 1.20698 1.09995 1.20109 0.96465 0.95828 0.76733 1.21232 1.00582 1.29529 1.01736 0.93205 1.24736 0.95445 0.96684 0.96474 1.69934 1.27770 1.43647 1.10593 0.86798 0.83820 0.80360 0.78486 1.20199 1.21186 1.21242 1.17789 0.78908 0.81446 0.86755 1.90670 1.59053 1.69355 1.26226 1.20890 0.97167 0.91669 0.91907 1.22328 0.99631 0.96164 1.00012 1.18311 0.94366 0.87098 0.91320 1.84774 1.36197 1.13393 1.95764 1.22579 1.02779 0.98826 0.98661 1.19227 0.92236 0.88513 0.86086 1.84749 1.46671 1.66297 1.29741 1.68508 1.14010 1.32409 0.97125 0.91692 0.92233 0.93025 0.89535 0.92581 0.93138 0.90673 0.95628 0.89960 0.93190 0.83402 0.75026 0.84157 0.74297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.26 37.16 0.34 -2.19 16 2 C 0.13 2.45 3.22 -67.93 -0.22 2.23 16 3 C -0.15 -2.69 8.68 37.16 0.32 -2.37 16 4 N -0.57 -12.22 2.38 -168.45 -0.40 -12.62 16 5 C 0.23 5.44 3.90 -5.19 -0.02 5.42 16 6 C -0.49 -12.52 7.08 -34.44 -0.24 -12.76 16 7 H 0.05 1.34 7.81 -52.48 -0.41 0.93 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.88 -23.58 13.29 55.43 0.74 -22.84 16 10 Si 0.88 20.21 29.54 -169.99 -5.02 15.19 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.56 12.35 7.59 -12.18 -0.09 12.25 16 15 O -0.57 -12.96 15.67 5.35 0.08 -12.87 16 16 C 0.12 2.50 6.61 -83.05 -0.55 1.95 16 17 C -0.16 -2.74 9.59 -38.89 -0.37 -3.11 16 18 C 0.14 2.11 6.77 -38.89 -0.26 1.85 16 19 O -0.49 -5.93 13.54 -18.98 -0.26 -6.18 16 20 C -0.21 -3.15 10.00 -39.04 -0.39 -3.54 16 21 C 0.32 5.96 7.73 -17.19 -0.13 5.83 16 22 O -0.47 -8.61 13.56 -18.72 -0.25 -8.87 16 23 N -0.40 -8.49 4.98 -9.95 -0.05 -8.54 16 24 H 0.06 1.11 6.92 -51.93 -0.36 0.75 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.63 6.91 -51.93 -0.36 1.27 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.48 7.09 -51.93 -0.37 1.11 16 31 H 0.03 0.65 6.47 -51.93 -0.34 0.31 16 32 H 0.08 2.11 5.27 -52.09 -0.27 1.84 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.15 2.41 7.65 -52.48 -0.40 2.01 16 35 H 0.39 2.64 9.06 45.56 0.41 3.05 16 36 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.40 6.15 9.06 45.56 0.41 6.57 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -30.86 315.33 -5.06 -35.91 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -2.93 Total: 8.85 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.72 Total: 7.21 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.29 Total: -44.00 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.43 Total: -27.92 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.86 -5.06 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597037813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.159 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds