Wall clock time and date at job start Tue Mar 31 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 N 1.46499 * 109.46664 * 119.99747 * 2 1 3 5 5 C 1.46499 * 120.00074 * 294.96982 * 4 2 1 6 6 C 1.50702 * 109.47174 * 262.62516 * 5 4 2 7 7 H 1.08005 * 119.99490 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00347 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00071 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00054 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47060 * 120.00006 * 10 8 6 13 13 H 1.48502 * 109.47150 * 240.00142 * 10 8 6 14 14 C 1.34776 * 120.00042 * 114.96838 * 4 2 1 15 15 O 1.21513 * 120.00120 * 2.94850 * 14 4 2 16 16 C 1.48172 * 119.99998 * 182.95423 * 14 4 2 17 17 C 1.38971 * 119.66399 * 173.12700 * 16 14 4 18 18 C 1.39379 * 119.10732 * 180.02562 * 17 16 14 19 19 O 1.35756 * 120.77753 * 179.97438 * 18 17 16 20 20 C 1.38953 * 118.44272 * 359.97438 * 18 17 16 21 21 C 1.38986 * 119.24676 * 0.25082 * 20 18 17 22 22 O 1.35673 * 119.58542 * 179.72957 * 21 20 18 23 23 N 1.32020 * 120.83595 * 359.50261 * 21 20 18 24 24 H 1.08997 * 109.47268 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.46531 * 60.00025 * 1 2 3 26 26 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47268 * 239.99698 * 2 1 3 28 28 H 1.09006 * 109.46645 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47114 * 299.99296 * 3 2 1 30 30 H 1.08997 * 109.47304 * 59.99720 * 3 2 1 31 31 H 1.08995 * 109.47456 * 22.62427 * 5 4 2 32 32 H 1.09005 * 109.47505 * 142.63277 * 5 4 2 33 33 H 0.96997 * 119.99573 * 179.97438 * 9 8 6 34 34 H 1.08004 * 120.44696 * 359.97083 * 17 16 14 35 35 H 0.96694 * 114.00258 * 270.02314 * 19 18 17 36 36 H 1.07998 * 120.37437 * 179.97438 * 20 18 17 37 37 H 0.96694 * 114.00144 * 89.99706 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7574 -0.1290 2.5239 6 6 2.9613 0.6519 2.9845 7 1 3.8333 0.7231 2.3512 8 6 2.9491 1.2762 4.2137 9 7 1.8871 1.1899 4.9846 10 14 4.4411 2.2448 4.7841 11 1 5.4966 2.1879 3.7411 12 1 4.0529 3.6587 5.0197 13 1 4.9601 1.6572 6.0453 14 6 2.7074 -1.8425 1.0753 15 8 2.9701 -2.2804 -0.0273 16 6 3.1445 -2.5750 2.2868 17 6 3.7270 -3.8303 2.1589 18 6 4.1334 -4.5093 3.3062 19 8 4.7057 -5.7373 3.2207 20 6 3.9391 -3.8997 4.5397 21 6 3.3453 -2.6441 4.5907 22 8 3.1472 -2.0451 5.7917 23 7 2.9756 -2.0250 3.4848 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.8923 0.5322 2.4753 32 1 1.5579 -0.9373 3.2276 33 1 1.8787 1.6289 5.8495 34 1 3.8622 -4.2741 1.1835 35 1 4.0743 -6.4688 3.2555 36 1 4.2419 -4.3980 5.4488 37 1 3.8858 -1.4927 6.0823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597037813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:04 Heat of formation + Delta-G solvation = -82.294900 kcal Electronic energy + Delta-G solvation = -22949.573864 eV Core-core repulsion = 19499.816463 eV Total energy + Delta-G solvation = -3449.757400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91528 -40.44468 -38.87034 -37.54770 -37.25988 -34.72098 -33.21880 -31.86164 -31.30212 -29.01394 -27.97181 -25.92506 -24.80851 -24.13182 -22.61262 -20.61509 -19.46934 -18.94425 -18.46356 -18.15154 -17.28309 -17.10223 -16.93671 -16.33082 -16.17441 -15.83286 -15.53848 -14.98131 -14.62623 -14.20935 -14.04410 -13.97815 -13.61667 -13.27660 -13.13816 -12.93163 -12.73408 -12.67009 -12.41301 -12.26128 -12.14057 -11.87901 -11.57265 -11.42532 -11.17201 -10.57870 -10.41539 -10.06763 -9.70350 -9.31511 -7.94623 -5.98092 -0.39639 0.09053 1.38480 1.45413 1.52907 1.69865 2.14285 2.50935 2.59738 2.82420 3.11287 3.37087 3.48875 3.89692 3.98632 4.03956 4.26766 4.37447 4.43827 4.48514 4.68985 4.72639 4.81763 4.94073 4.98113 4.99093 5.20441 5.29095 5.36521 5.48731 5.64467 5.96479 5.98757 6.37545 6.57356 6.63536 6.69406 6.92693 7.06232 7.29048 7.62521 9.12547 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.009465 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.955271 B = 2957.607591 C = 4594.889201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 C -0.140 4.140 4 N -0.572 5.572 5 C 0.249 3.751 6 C -0.489 4.489 7 H 0.029 0.971 8 C 0.037 3.963 9 N -0.905 5.905 10 Si 0.929 3.071 11 H -0.287 1.287 12 H -0.287 1.287 13 H -0.271 1.271 14 C 0.556 3.444 15 O -0.587 6.587 16 C 0.095 3.905 17 C -0.156 4.156 18 C 0.166 3.834 19 O -0.486 6.486 20 C -0.185 4.185 21 C 0.303 3.697 22 O -0.480 6.480 23 N -0.439 5.439 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.259 0.741 34 H 0.155 0.845 35 H 0.422 0.578 36 H 0.175 0.825 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 -9.304 -1.815 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 C -0.198 4.198 4 N -0.300 5.300 5 C 0.129 3.871 6 C -0.528 4.528 7 H 0.047 0.953 8 C -0.163 4.163 9 N -0.545 5.545 10 Si 0.757 3.243 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.197 1.197 14 C 0.344 3.656 15 O -0.470 6.470 16 C -0.043 4.043 17 C -0.178 4.178 18 C 0.112 3.888 19 O -0.301 6.301 20 C -0.206 4.206 21 C 0.122 3.878 22 O -0.288 6.288 23 N -0.161 5.161 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.024 0.976 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.173 0.827 35 H 0.283 0.717 36 H 0.192 0.808 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.913 -8.592 -2.140 8.901 hybrid contribution 1.166 0.163 0.655 1.348 sum 2.079 -8.429 -1.485 8.808 Atomic orbital electron populations 1.22046 0.93541 1.01906 1.03060 1.21236 0.95316 0.93736 0.87869 1.21941 1.00280 0.95070 1.02532 1.48435 1.50553 1.21018 1.10030 1.19671 0.95043 0.94691 0.77676 1.21150 1.00166 1.29912 1.01602 0.95258 1.25191 0.97340 0.97310 0.96438 1.70024 1.29119 1.44508 1.10848 0.85989 0.81020 0.79088 0.78234 1.21212 1.21360 1.19657 1.18171 0.78574 0.81473 0.87407 1.90633 1.59753 1.69745 1.26895 1.20747 0.99334 0.93024 0.91164 1.22423 0.98987 0.95091 1.01309 1.18162 0.92366 0.87961 0.90263 1.84729 1.36880 1.12954 1.95487 1.22745 1.00688 0.97099 1.00112 1.19452 0.93200 0.89718 0.85399 1.84723 1.47695 1.66713 1.29693 1.68213 1.15523 1.34325 0.98058 0.93103 0.88857 0.93113 0.89550 0.94459 0.89423 0.92941 0.97597 0.91321 0.93178 0.82726 0.71701 0.80789 0.73281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.26 71.98 0.67 -4.01 16 2 C 0.12 4.55 3.22 44.99 0.14 4.70 16 3 C -0.14 -5.05 8.68 71.98 0.62 -4.42 16 4 N -0.57 -25.42 2.38 -805.16 -1.91 -27.33 16 5 C 0.25 12.33 3.90 85.63 0.33 12.66 16 6 C -0.49 -25.61 7.08 25.60 0.18 -25.43 16 7 H 0.03 1.63 7.81 -2.91 -0.02 1.60 16 8 C 0.04 1.93 5.46 84.65 0.46 2.39 16 9 N -0.90 -49.13 13.29 21.45 0.28 -48.84 16 10 Si 0.93 41.80 29.54 68.60 2.03 43.82 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 C 0.56 24.84 7.59 86.88 0.66 25.50 16 15 O -0.59 -26.91 15.67 -3.76 -0.06 -26.97 16 16 C 0.10 3.91 6.61 41.80 0.28 4.19 16 17 C -0.16 -5.16 9.59 22.72 0.22 -4.94 16 18 C 0.17 4.45 6.77 22.72 0.15 4.60 16 19 O -0.49 -9.64 13.54 -90.82 -1.23 -10.87 16 20 C -0.18 -5.12 10.00 22.62 0.23 -4.90 16 21 C 0.30 11.05 7.73 84.84 0.66 11.71 16 22 O -0.48 -17.43 13.56 -89.91 -1.22 -18.65 16 23 N -0.44 -18.89 4.98 -298.37 -1.49 -20.38 16 24 H 0.05 1.75 6.92 -2.39 -0.02 1.73 16 25 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 3.25 6.91 -2.39 -0.02 3.24 16 28 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 2.11 7.09 -2.39 -0.02 2.09 16 31 H 0.01 0.32 6.47 -2.39 -0.02 0.31 16 32 H 0.07 3.67 5.27 -2.71 -0.01 3.65 16 33 H 0.26 13.48 8.31 -92.71 -0.77 12.70 16 34 H 0.16 4.82 7.65 -2.91 -0.02 4.80 16 35 H 0.42 3.64 9.06 -74.06 -0.67 2.97 16 36 H 0.17 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.41 12.40 9.06 -74.06 -0.67 11.73 16 Total: -1.00 -67.38 315.33 0.79 -66.59 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.22 Total: 20.58 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 4.60 Total: 22.05 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.11 Total: -96.56 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -2.51 Total: -56.49 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -67.38 0.79 -66.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597037813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.703 kcal (2) G-P(sol) polarization free energy of solvation -67.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds