Wall clock time and date at job start Tue Mar 31 2020 01:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.52998 * 109.47169 * 119.99329 * 2 1 3 5 5 C 1.50697 * 109.47505 * 295.00341 * 4 2 1 6 6 O 1.21276 * 120.00038 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00044 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47362 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00388 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00060 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00093 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00208 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00363 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99661 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00454 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47425 * 89.99984 * 16 14 12 18 18 H 1.48499 * 109.47314 * 210.00368 * 16 14 12 19 19 H 1.48503 * 109.46982 * 329.99942 * 16 14 12 20 20 C 1.50697 * 109.47600 * 239.99946 * 2 1 3 21 21 C 1.34515 * 125.79159 * 119.99321 * 20 2 1 22 22 C 1.41385 * 106.84000 * 180.02562 * 21 20 2 23 23 C 1.34507 * 106.84104 * 0.02562 * 22 21 20 24 24 O 1.34300 * 108.42410 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.46496 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47143 * 300.00039 * 1 2 3 27 27 H 1.09003 * 109.47255 * 60.00390 * 1 2 3 28 28 H 1.09003 * 109.46867 * 55.01102 * 4 2 1 29 29 H 1.09002 * 109.47002 * 175.00309 * 4 2 1 30 30 H 0.96999 * 120.00051 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.47172 * 300.00679 * 8 7 5 32 32 H 1.09002 * 109.46930 * 60.00321 * 8 7 5 33 33 H 0.97006 * 119.99903 * 359.97438 * 11 9 8 34 34 H 0.96997 * 120.00167 * 180.02562 * 15 14 12 35 35 H 1.08001 * 126.57671 * 0.29417 * 21 20 2 36 36 H 1.08003 * 126.57418 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.78847 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3917 3.7002 8 6 1.5974 0.3652 4.8933 9 6 2.0996 -0.3452 6.1237 10 8 2.7204 -1.3815 6.0149 11 7 1.8591 0.1711 7.3453 12 6 2.3165 -0.4749 8.4647 13 1 2.8692 -1.3977 8.3677 14 6 2.0690 0.0576 9.7240 15 7 1.3961 1.1801 9.8421 16 14 2.6928 -0.8222 11.2492 17 1 4.0540 -0.3309 11.5821 18 1 1.7770 -0.5513 12.3863 19 1 2.7433 -2.2838 10.9916 20 6 2.0324 -0.7104 -1.2304 21 6 2.8090 -0.1719 -2.1877 22 6 3.0379 -1.1848 -3.1472 23 6 2.3872 -2.2814 -2.7192 24 8 1.7801 -1.9883 -1.5576 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6055 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 2.4884 -1.2155 3.7908 31 1 2.0326 1.3635 4.8473 32 1 0.5111 0.4441 4.9369 33 1 1.3630 1.0002 7.4324 34 1 1.2236 1.5521 10.7211 35 1 3.1886 0.8388 -2.2156 36 1 3.6231 -1.0951 -4.0506 37 1 2.3584 -3.2359 -3.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599934634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:28 Heat of formation + Delta-G solvation = -72.055975 kcal Electronic energy + Delta-G solvation = -20763.137179 eV Core-core repulsion = 17313.823771 eV Total energy + Delta-G solvation = -3449.313407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.75143 -39.76992 -38.21905 -35.34045 -34.41110 -33.68489 -33.08891 -31.40830 -29.47047 -28.46971 -26.83975 -24.50612 -23.02284 -21.91911 -20.45999 -19.91020 -19.49936 -18.11924 -17.61860 -16.96392 -16.15021 -15.82048 -15.53158 -15.45526 -14.76027 -14.60013 -14.30472 -14.03463 -13.72280 -13.24445 -13.11137 -12.99148 -12.81836 -12.51885 -12.20365 -11.97581 -11.65080 -11.48670 -11.38458 -11.13998 -11.09111 -10.47296 -10.33530 -10.09311 -9.67754 -9.65458 -8.81620 -8.66397 -8.62259 -8.12153 -6.53299 -3.95394 1.56546 2.44201 2.77911 2.82405 3.10509 3.20776 3.25177 3.37050 3.71953 4.09768 4.45059 4.60475 4.80385 4.85590 4.86108 4.93648 5.10266 5.15209 5.30948 5.51987 5.52192 5.61763 5.72086 5.82120 5.88853 5.93828 5.95042 6.00921 6.05053 6.27994 6.32052 6.66914 6.98420 7.44337 7.76892 7.90100 8.39654 8.44278 9.02768 9.37217 9.85048 10.63583 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046441 B = 0.002620 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.765485 B =10682.872673 C =11041.890929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.109 0.891 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.548 6.548 7 N -0.707 5.707 8 C 0.108 3.892 9 C 0.427 3.573 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.001 3.999 21 C -0.214 4.214 22 C -0.214 4.214 23 C -0.047 4.047 24 O -0.173 6.173 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.411 0.589 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -2.588 -21.012 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 H 0.127 0.873 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.426 6.426 7 N -0.360 5.360 8 C -0.019 4.019 9 C 0.213 3.787 10 O -0.484 6.484 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.049 4.049 21 C -0.233 4.233 22 C -0.233 4.233 23 C -0.115 4.115 24 O -0.069 6.069 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.249 0.751 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.127 -2.630 -20.760 20.926 hybrid contribution 0.466 -0.196 0.671 0.840 sum 0.592 -2.825 -20.089 20.295 Atomic orbital electron populations 1.21989 0.92990 1.02363 1.03765 1.19530 0.97271 0.97958 0.86305 0.87329 1.21734 1.03463 1.00644 0.91935 1.20432 0.79468 0.85688 0.84442 1.90656 1.40479 1.24773 1.86733 1.45744 1.57152 1.28329 1.04825 1.20956 1.00853 0.95589 0.84536 1.19759 0.86569 0.87816 0.84576 1.90498 1.46268 1.25660 1.86010 1.41805 1.48384 1.23835 1.04347 1.19730 1.32954 1.07699 0.83088 0.87677 1.25331 0.96718 0.96209 0.99476 1.69612 1.39223 1.19076 1.25559 0.85806 0.78456 0.79667 0.80069 1.20250 1.20783 1.19308 1.22534 1.00977 0.82514 0.98886 1.21627 1.04271 1.01370 0.96028 1.21822 1.05512 0.93657 1.02325 1.24016 0.99433 1.00890 0.87159 1.84016 1.59396 1.28170 1.35272 0.92698 0.89380 0.92529 0.88262 0.88423 0.75063 0.89824 0.89813 0.77026 0.91567 0.83502 0.83614 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.92 37.16 0.33 -1.38 16 2 C 0.01 0.09 2.44 -91.77 -0.22 -0.14 16 3 H 0.11 1.18 7.91 -51.93 -0.41 0.77 16 4 C -0.14 -1.53 5.16 -27.89 -0.14 -1.68 16 5 C 0.51 7.47 7.55 -10.99 -0.08 7.39 16 6 O -0.55 -9.27 13.96 5.56 0.08 -9.19 16 7 N -0.71 -11.27 5.53 -61.48 -0.34 -11.61 16 8 C 0.11 1.95 6.15 -5.20 -0.03 1.91 16 9 C 0.43 9.68 7.85 -10.99 -0.09 9.59 16 10 O -0.60 -15.15 15.24 5.55 0.08 -15.07 16 11 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 12 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 13 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.77 13.05 55.50 0.72 -23.05 16 16 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.00 0.01 5.83 -35.63 -0.21 -0.19 16 21 C -0.21 -2.16 10.78 -39.70 -0.43 -2.59 16 22 C -0.21 -1.91 10.91 -39.70 -0.43 -2.35 16 23 C -0.05 -0.41 12.09 29.41 0.36 -0.05 16 24 O -0.17 -1.89 10.65 5.71 0.06 -1.83 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.14 5.95 -51.93 -0.31 0.83 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.41 6.49 7.44 -40.82 -0.30 6.18 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.40 9.36 7.90 -40.82 -0.32 9.03 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 37 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -31.22 325.14 -5.43 -36.65 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -4.66 Total: 14.68 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.19 Total: 2.68 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.33 Total: -48.23 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: 0.22 Total: -26.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.22 -5.43 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599934634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.408 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds