Wall clock time and date at job start Tue Mar 31 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.52998 * 109.47169 * 119.99329 * 2 1 3 5 5 C 1.50697 * 109.47505 * 295.00341 * 4 2 1 6 6 O 1.21276 * 120.00038 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00044 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47362 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00388 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00060 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00093 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00208 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00363 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99661 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00454 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47425 * 89.99984 * 16 14 12 18 18 H 1.48499 * 109.47314 * 210.00368 * 16 14 12 19 19 H 1.48503 * 109.46982 * 329.99942 * 16 14 12 20 20 C 1.50697 * 109.47600 * 239.99946 * 2 1 3 21 21 C 1.34515 * 125.79159 * 119.99321 * 20 2 1 22 22 C 1.41385 * 106.84000 * 180.02562 * 21 20 2 23 23 C 1.34507 * 106.84104 * 0.02562 * 22 21 20 24 24 O 1.34300 * 108.42410 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.46496 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47143 * 300.00039 * 1 2 3 27 27 H 1.09003 * 109.47255 * 60.00390 * 1 2 3 28 28 H 1.09003 * 109.46867 * 55.01102 * 4 2 1 29 29 H 1.09002 * 109.47002 * 175.00309 * 4 2 1 30 30 H 0.96999 * 120.00051 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.47172 * 300.00679 * 8 7 5 32 32 H 1.09002 * 109.46930 * 60.00321 * 8 7 5 33 33 H 0.97006 * 119.99903 * 359.97438 * 11 9 8 34 34 H 0.96997 * 120.00167 * 180.02562 * 15 14 12 35 35 H 1.08001 * 126.57671 * 0.29417 * 21 20 2 36 36 H 1.08003 * 126.57418 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.78847 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3917 3.7002 8 6 1.5974 0.3652 4.8933 9 6 2.0996 -0.3452 6.1237 10 8 2.7204 -1.3815 6.0149 11 7 1.8591 0.1711 7.3453 12 6 2.3165 -0.4749 8.4647 13 1 2.8692 -1.3977 8.3677 14 6 2.0690 0.0576 9.7240 15 7 1.3961 1.1801 9.8421 16 14 2.6928 -0.8222 11.2492 17 1 4.0540 -0.3309 11.5821 18 1 1.7770 -0.5513 12.3863 19 1 2.7433 -2.2838 10.9916 20 6 2.0324 -0.7104 -1.2304 21 6 2.8090 -0.1719 -2.1877 22 6 3.0379 -1.1848 -3.1472 23 6 2.3872 -2.2814 -2.7192 24 8 1.7801 -1.9883 -1.5576 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6055 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 2.4884 -1.2155 3.7908 31 1 2.0326 1.3635 4.8473 32 1 0.5111 0.4441 4.9369 33 1 1.3630 1.0002 7.4324 34 1 1.2236 1.5521 10.7211 35 1 3.1886 0.8388 -2.2156 36 1 3.6231 -1.0951 -4.0506 37 1 2.3584 -3.2359 -3.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599934634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:27 Heat of formation + Delta-G solvation = -93.665998 kcal Electronic energy + Delta-G solvation = -20764.074259 eV Core-core repulsion = 17313.823771 eV Total energy + Delta-G solvation = -3450.250488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.47117 -41.07923 -39.96715 -36.44698 -36.04413 -35.21669 -33.80150 -33.38040 -30.54876 -29.40460 -28.18925 -26.28512 -23.92444 -22.64172 -21.52757 -21.37757 -20.72377 -20.04825 -18.64407 -18.02312 -17.29948 -16.99805 -16.90984 -16.78033 -16.35677 -15.94968 -15.68503 -15.41890 -15.07032 -14.42330 -14.06617 -13.95147 -13.71622 -13.68427 -13.54658 -13.47408 -13.19571 -12.90762 -12.46217 -12.42967 -12.26887 -12.12879 -11.95868 -11.57349 -10.88831 -10.80167 -10.56204 -10.17052 -10.07360 -9.34560 -8.51525 -6.01732 0.84416 1.36188 1.42730 1.55222 1.60677 1.74275 1.91141 2.02474 2.18590 2.33424 3.13222 3.15760 3.59021 3.72816 3.99952 4.04792 4.18515 4.24724 4.33388 4.42033 4.44770 4.48400 4.65172 4.69927 4.91888 4.95753 5.07173 5.16148 5.21471 5.26579 5.37735 5.45106 5.65578 5.91595 6.27025 6.45801 6.54601 7.03239 7.18492 7.44305 7.94374 8.65395 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046441 B = 0.002620 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.765485 B =10682.872673 C =11041.890929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.012 3.988 3 H 0.106 0.894 4 C -0.129 4.129 5 C 0.517 3.483 6 O -0.570 6.570 7 N -0.710 5.710 8 C 0.121 3.879 9 C 0.432 3.568 10 O -0.625 6.625 11 N -0.560 5.560 12 C -0.337 4.337 13 H 0.086 0.914 14 C -0.011 4.011 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.017 4.017 21 C -0.221 4.221 22 C -0.227 4.227 23 C -0.046 4.046 24 O -0.188 6.188 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.413 0.587 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 -3.155 -22.023 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 H 0.124 0.876 4 C -0.168 4.168 5 C 0.305 3.695 6 O -0.450 6.450 7 N -0.364 5.364 8 C -0.007 4.007 9 C 0.219 3.781 10 O -0.513 6.513 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.067 4.067 21 C -0.240 4.240 22 C -0.246 4.246 23 C -0.112 4.112 24 O -0.085 6.085 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.251 0.749 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.530 -3.183 -21.795 22.032 hybrid contribution 0.339 -0.027 0.862 0.927 sum 0.869 -3.210 -20.933 21.195 Atomic orbital electron populations 1.21918 0.93419 1.02261 1.03057 1.19428 0.96874 0.97899 0.86424 0.87610 1.21733 1.04508 1.00489 0.90095 1.20978 0.78486 0.85425 0.84639 1.90653 1.41437 1.25967 1.86992 1.45786 1.57582 1.28343 1.04671 1.20769 1.01273 0.95522 0.83117 1.20487 0.85072 0.87237 0.85300 1.90475 1.47176 1.26969 1.86671 1.41863 1.49000 1.24095 1.04630 1.19730 1.34396 1.07908 0.84607 0.89613 1.26129 0.96478 0.96792 1.01775 1.69677 1.39576 1.19861 1.26524 0.84869 0.78231 0.78320 0.76585 1.19538 1.19655 1.19459 1.22436 1.02159 0.82890 0.99229 1.21928 1.03803 1.02156 0.96128 1.22155 1.06045 0.93421 1.02977 1.24772 0.98092 1.02176 0.86195 1.84004 1.59990 1.28179 1.36321 0.92468 0.91307 0.91912 0.87111 0.86817 0.74853 0.88744 0.88779 0.76694 0.91064 0.82617 0.81596 0.74932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.92 71.98 0.64 -2.59 16 2 C 0.01 0.26 2.44 -11.54 -0.03 0.23 16 3 H 0.11 2.23 7.91 -2.38 -0.02 2.21 16 4 C -0.13 -2.69 5.16 29.85 0.15 -2.53 16 5 C 0.52 14.53 7.55 87.66 0.66 15.19 16 6 O -0.57 -18.95 13.96 -3.02 -0.04 -18.99 16 7 N -0.71 -22.06 5.53 -466.81 -2.58 -24.64 16 8 C 0.12 4.28 6.15 85.63 0.53 4.81 16 9 C 0.43 19.66 7.85 87.65 0.69 20.35 16 10 O -0.62 -31.95 15.24 -3.07 -0.05 -32.00 16 11 N -0.56 -27.94 5.29 -306.98 -1.62 -29.57 16 12 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 13 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 14 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 15 N -0.92 -48.52 13.05 21.66 0.28 -48.23 16 16 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 C -0.02 -0.35 5.83 24.83 0.14 -0.20 16 21 C -0.22 -4.12 10.78 22.19 0.24 -3.88 16 22 C -0.23 -3.55 10.91 22.19 0.24 -3.31 16 23 C -0.05 -0.68 12.09 66.97 0.81 0.13 16 24 O -0.19 -3.80 10.65 -2.50 -0.03 -3.82 16 25 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.07 1.76 5.95 -2.39 -0.01 1.75 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.41 12.73 7.44 -92.71 -0.69 12.04 16 31 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.40 19.09 7.90 -92.70 -0.73 18.36 16 34 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.23 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -66.26 325.14 3.04 -63.22 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -0.31 Total: 40.01 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.36 Total: 10.41 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -3.92 Total: -102.44 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.12 Total: -54.82 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -66.26 3.04 -63.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599934634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.446 kcal (2) G-P(sol) polarization free energy of solvation -66.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds