Wall clock time and date at job start Tue Mar 31 2020 01:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47462 * 2 1 4 4 C 1.50708 * 109.46876 * 240.00210 * 2 1 3 5 5 H 1.07999 * 120.00002 * 240.00334 * 4 2 1 6 6 C 1.37873 * 120.00015 * 60.00055 * 4 2 1 7 7 N 1.31519 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47345 * 89.99705 * 8 6 4 10 10 H 1.48496 * 109.47632 * 210.00184 * 8 6 4 11 11 H 1.48505 * 109.46800 * 330.00102 * 8 6 4 12 12 N 1.46903 * 109.47458 * 120.00511 * 2 1 3 13 13 C 1.46898 * 110.99673 * 274.99797 * 12 2 1 14 14 C 1.53006 * 109.47006 * 179.97438 * 13 12 2 15 15 O 1.42897 * 109.46881 * 64.99925 * 14 13 12 16 16 C 1.35903 * 117.00184 * 180.02562 * 15 14 13 17 17 C 1.38753 * 120.04979 * 359.72095 * 16 15 14 18 18 C 1.38129 * 119.93728 * 179.79647 * 17 16 15 19 19 C 1.38281 * 120.05900 * 0.48194 * 18 17 16 20 20 C 1.38242 * 120.10972 * 359.75011 * 19 18 17 21 21 N 1.48005 * 119.97278 * 179.97438 * 20 19 18 22 22 O 1.21801 * 120.00184 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99728 * 0.02592 * 21 20 19 24 24 C 1.38167 * 120.06025 * 0.02562 * 20 19 18 25 25 H 1.08994 * 109.47006 * 59.99645 * 1 2 3 26 26 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46579 * 299.99779 * 1 2 3 28 28 H 0.96997 * 120.00033 * 179.97438 * 7 6 4 29 29 H 1.00895 * 111.00497 * 151.03719 * 12 2 1 30 30 H 1.09001 * 109.47062 * 59.99745 * 13 12 2 31 31 H 1.08993 * 109.47084 * 299.99192 * 13 12 2 32 32 H 1.08992 * 109.47046 * 184.99823 * 14 13 12 33 33 H 1.08997 * 109.47395 * 305.00364 * 14 13 12 34 34 H 1.07995 * 120.03047 * 0.02562 * 17 16 15 35 35 H 1.07999 * 119.96543 * 180.23624 * 18 17 16 36 36 H 1.07998 * 119.95001 * 179.76798 * 19 18 17 37 37 H 1.07994 * 120.03140 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.3425 -2.1615 -4.4120 10 1 2.4864 -0.1413 -5.1123 11 1 3.6291 -1.7583 -3.7123 12 7 2.0198 -0.6926 1.1994 13 6 2.0826 0.2224 2.3468 14 6 2.5953 -0.5334 3.5744 15 8 3.9435 -0.9498 3.3486 16 6 4.5519 -1.6398 4.3490 17 6 3.8671 -1.9054 5.5261 18 6 4.4864 -2.6106 6.5397 19 6 5.7908 -3.0429 6.3859 20 6 6.4767 -2.7753 5.2159 21 7 7.8730 -3.2391 5.0547 22 8 8.4780 -3.0032 4.0243 23 8 8.4170 -3.8566 5.9527 24 6 5.8604 -2.0744 4.1972 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.7087 1.1614 -3.4844 29 1 2.9173 -1.1207 1.0286 30 1 1.0872 0.6162 2.5525 31 1 2.7591 1.0459 2.1182 32 1 2.5581 0.1207 4.4455 33 1 1.9694 -1.4083 3.7500 34 1 2.8498 -1.5644 5.6483 35 1 3.9525 -2.8209 7.4547 36 1 6.2745 -3.5909 7.1810 37 1 6.3968 -1.8652 3.2835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:19 Heat of formation + Delta-G solvation = -34.427048 kcal Electronic energy + Delta-G solvation = -20905.552266 eV Core-core repulsion = 17457.870572 eV Total energy + Delta-G solvation = -3447.681694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.32245 -41.37665 -38.96940 -37.74849 -37.55503 -34.71872 -32.99605 -32.25969 -30.95380 -28.57717 -27.68064 -27.21988 -24.19361 -23.95938 -22.60911 -21.73750 -20.59855 -19.82192 -18.68547 -18.64010 -18.22912 -17.41591 -17.17806 -17.03150 -16.76338 -15.84823 -15.39389 -15.16961 -14.97050 -14.50847 -13.91027 -13.75088 -13.55823 -13.14613 -13.03514 -12.85658 -12.74252 -12.72584 -12.56362 -12.36321 -12.30275 -12.23400 -12.19880 -11.94670 -11.70240 -10.90810 -10.66117 -10.59641 -9.62266 -9.12306 -8.16685 -6.30457 -1.31591 -0.00233 0.25410 0.26617 1.40034 1.40826 1.51049 2.01064 2.27085 2.39099 3.12072 3.42194 3.53228 3.61352 3.68773 3.77434 3.96139 4.07456 4.24934 4.36464 4.39052 4.66898 4.71149 4.83360 4.87380 4.91399 4.99588 5.04731 5.06487 5.20675 5.36000 5.45979 5.63580 5.85260 6.17298 6.21574 6.40955 6.41865 6.72787 6.94438 7.40093 8.88750 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.003385 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.345653 B = 8270.247074 C = 9431.840980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.213 3.787 3 H -0.030 1.030 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.686 5.686 13 C 0.056 3.944 14 C 0.067 3.933 15 O -0.328 6.328 16 C 0.131 3.869 17 C -0.146 4.146 18 C -0.059 4.059 19 C -0.092 4.092 20 C -0.023 4.023 21 N 0.029 4.971 22 O -0.209 6.209 23 O -0.145 6.145 24 C -0.118 4.118 25 H 0.055 0.945 26 H 0.028 0.972 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.098 0.902 31 H 0.019 0.981 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -4.934 22.019 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 H -0.012 1.012 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.317 5.317 13 C -0.074 4.074 14 C -0.008 4.008 15 O -0.241 6.241 16 C 0.084 3.916 17 C -0.165 4.165 18 C -0.077 4.077 19 C -0.112 4.112 20 C -0.106 4.106 21 N 0.545 4.455 22 O -0.414 6.414 23 O -0.367 6.367 24 C -0.138 4.138 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.116 0.884 31 H 0.037 0.963 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.195 0.805 35 H 0.213 0.787 36 H 0.191 0.809 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.355 -4.731 21.845 22.475 hybrid contribution 1.502 0.292 -1.666 2.262 sum 3.856 -4.439 20.179 21.018 Atomic orbital electron populations 1.21539 0.97243 0.99017 0.99397 1.18935 0.93021 0.90715 0.86826 1.01238 1.21604 1.31726 1.12691 0.91918 0.92725 1.25685 0.95158 0.95659 1.01920 1.70005 1.37382 1.23915 1.24221 0.85540 0.78794 0.78335 0.78867 1.19924 1.20725 1.19607 1.60737 1.32292 1.32971 1.05696 1.22112 1.00586 0.93897 0.90770 1.23198 0.78693 1.00259 0.98609 1.86137 1.30107 1.68335 1.39557 1.18761 0.90994 0.92891 0.88906 1.22210 1.02775 0.99597 0.91883 1.21505 0.92088 0.93796 1.00279 1.21370 0.95552 0.99226 0.95017 1.20862 0.81796 1.08030 0.99880 1.43905 1.03771 0.98194 0.99649 1.94586 1.66047 1.62341 1.18385 1.94472 1.70099 1.37754 1.34419 1.20079 0.94406 0.99448 0.99886 0.92600 0.95261 0.95129 0.92763 0.85019 0.88358 0.96316 0.87900 0.89345 0.80463 0.78664 0.80894 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 9.19 71.98 0.66 -4.79 16 2 C 0.21 10.70 2.60 44.17 0.11 10.82 16 3 H -0.03 -1.66 7.80 -2.39 -0.02 -1.68 16 4 C -0.54 -29.97 8.59 25.60 0.22 -29.75 16 5 H 0.05 3.01 7.62 -2.91 -0.02 2.99 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -52.57 11.32 21.45 0.24 -52.33 16 8 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 N -0.69 -27.82 6.30 -495.43 -3.12 -30.94 16 13 C 0.06 1.71 5.90 86.31 0.51 2.22 16 14 C 0.07 1.40 5.08 71.98 0.37 1.76 16 15 O -0.33 -8.46 9.66 -92.46 -0.89 -9.35 16 16 C 0.13 2.77 6.69 22.51 0.15 2.92 16 17 C -0.15 -1.81 9.04 22.37 0.20 -1.61 16 18 C -0.06 -0.51 10.04 22.25 0.22 -0.29 16 19 C -0.09 -1.29 9.55 22.28 0.21 -1.07 16 20 C -0.02 -0.50 6.85 36.36 0.25 -0.25 16 21 N 0.03 0.79 4.45 -46.51 -0.21 0.59 16 22 O -0.21 -6.58 18.45 18.88 0.35 -6.24 16 23 O -0.14 -3.77 18.44 18.88 0.35 -3.42 16 24 C -0.12 -2.86 9.49 22.37 0.21 -2.65 16 25 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.25 7.45 -2.39 -0.02 1.23 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.33 14.04 7.78 -89.70 -0.70 13.34 16 30 H 0.10 2.78 7.44 -2.39 -0.02 2.77 16 31 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 32 H 0.10 1.37 7.65 -2.39 -0.02 1.35 16 33 H 0.09 1.63 7.67 -2.39 -0.02 1.61 16 34 H 0.18 1.17 6.30 -2.91 -0.02 1.15 16 35 H 0.20 -0.02 8.06 -2.91 -0.02 -0.04 16 36 H 0.17 1.69 7.60 -2.91 -0.02 1.66 16 37 H 0.14 3.83 7.61 -2.91 -0.02 3.81 16 Total: -1.00 -68.10 321.37 2.71 -65.38 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.40 Total: 11.78 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.57 Total: -21.39 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.09 Total: -82.68 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.20 Total: -19.01 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.10 2.71 -65.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.955 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds