Wall clock time and date at job start Tue Mar 31 2020 01:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46989 * 2 1 4 4 C 1.50698 * 109.46967 * 119.99457 * 2 1 3 5 5 H 1.08004 * 119.99964 * 120.00344 * 4 2 1 6 6 C 1.37878 * 120.00200 * 300.00181 * 4 2 1 7 7 N 1.31511 * 119.99831 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99861 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47241 * 60.00055 * 8 6 4 10 10 H 1.48499 * 109.46990 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47381 * 299.99931 * 8 6 4 12 12 N 1.46497 * 109.47523 * 239.99610 * 2 1 3 13 13 C 1.34782 * 119.99873 * 84.99529 * 12 2 1 14 14 O 1.21590 * 119.99786 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99901 * 180.02562 * 13 12 2 16 16 C 1.46501 * 119.99717 * 185.04722 * 15 13 12 17 17 C 1.52992 * 112.85226 * 71.46017 * 16 15 13 18 18 F 1.39901 * 109.47241 * 284.52729 * 17 16 15 19 19 F 1.39903 * 109.47065 * 44.52581 * 17 16 15 20 20 F 1.39898 * 109.47175 * 164.52832 * 17 16 15 21 21 C 1.53783 * 113.61209 * 300.26200 * 16 15 13 22 22 C 1.53780 * 87.07994 * 270.80382 * 21 16 15 23 23 C 1.53780 * 87.17406 * 334.52648 * 22 21 16 24 24 H 1.08999 * 109.47570 * 299.99833 * 1 2 3 25 25 H 1.09002 * 109.47164 * 60.00229 * 1 2 3 26 26 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 27 27 H 0.97004 * 119.99337 * 179.97438 * 7 6 4 28 28 H 0.96993 * 119.99907 * 265.00412 * 12 2 1 29 29 H 0.96996 * 119.99742 * 5.04361 * 15 13 12 30 30 H 1.08997 * 113.61391 * 156.25289 * 21 16 15 31 31 H 1.09005 * 113.61409 * 25.35164 * 21 16 15 32 32 H 1.09000 * 113.61626 * 89.11901 * 22 21 16 33 33 H 1.09003 * 113.61531 * 219.93883 * 22 21 16 34 34 H 1.08996 * 113.61570 * 140.02519 * 23 22 21 35 35 H 1.08998 * 113.61569 * 270.92828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8281 -2.5195 4.0084 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1615 -2.4117 15 7 2.5959 -0.6539 -3.4577 16 6 2.8410 0.0997 -4.6899 17 6 4.0717 1.0040 -4.5985 18 9 3.7676 2.1286 -3.8240 19 9 5.1247 0.2998 -4.0047 20 9 4.4482 1.4103 -5.8831 21 6 1.5920 0.8123 -5.2348 22 6 1.2963 -0.4760 -6.0207 23 6 2.8052 -0.7671 -5.9628 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1616 3.4844 28 1 2.2491 -1.6318 -1.1524 29 1 2.7567 -1.6101 -3.4338 30 1 1.8200 1.6685 -5.8697 31 1 0.8490 1.0373 -4.4697 32 1 0.6913 -1.1952 -5.4686 33 1 0.9247 -0.2964 -7.0296 34 1 3.0409 -1.8164 -5.7852 35 1 3.3642 -0.3420 -6.7964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:48 Heat of formation + Delta-G solvation = -161.113988 kcal Electronic energy + Delta-G solvation = -23341.607417 eV Core-core repulsion = 19346.575424 eV Total energy + Delta-G solvation = -3995.031993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.84273 -47.44163 -47.18359 -40.21538 -38.09333 -34.76288 -33.12518 -32.11614 -28.87952 -27.55072 -26.04708 -25.23408 -23.23938 -21.71083 -19.88216 -19.59038 -18.32228 -18.21224 -18.00862 -17.70769 -16.20409 -15.62338 -15.10036 -14.78685 -14.37219 -14.24119 -14.11780 -13.89376 -13.76851 -13.44480 -13.37467 -13.29010 -12.93216 -12.54492 -12.36890 -12.22023 -11.71046 -11.16249 -11.12120 -11.04075 -10.91789 -10.76668 -10.64284 -10.31275 -10.21592 -9.36710 -9.07068 -8.96114 -8.53673 -7.86755 -6.10905 -4.19887 2.75889 3.04524 3.26748 3.32093 3.33826 3.71462 3.77436 4.05148 4.17086 4.33029 4.51921 4.60244 4.81527 4.85508 5.16224 5.22275 5.38470 5.44142 5.63536 5.74768 6.00773 6.11181 6.59885 6.79696 6.98683 7.10462 7.21924 7.49743 7.63623 7.85002 8.01169 8.17325 8.75849 8.87888 9.28314 9.48902 10.95160 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.004735 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.218452 B = 5912.598814 C = 6199.777772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.281 3.719 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.720 5.720 13 C 0.692 3.308 14 O -0.577 6.577 15 N -0.730 5.730 16 C 0.127 3.873 17 C 0.444 3.556 18 F -0.161 7.161 19 F -0.185 7.185 20 F -0.188 7.188 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.131 4.131 24 H 0.090 0.910 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.385 0.615 29 H 0.401 0.599 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -4.803 -17.293 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.180 3.820 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.371 5.371 13 C 0.392 3.608 14 O -0.454 6.454 15 N -0.388 5.388 16 C 0.035 3.965 17 C 0.387 3.613 18 F -0.142 7.142 19 F -0.166 7.166 20 F -0.169 7.169 21 C -0.167 4.167 22 C -0.169 4.169 23 C -0.169 4.169 24 H 0.108 0.892 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.217 0.783 29 H 0.236 0.764 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.484 -3.535 -17.082 17.620 hybrid contribution 0.886 -1.195 1.025 1.807 sum 3.371 -4.730 -16.057 17.075 Atomic orbital electron populations 1.22095 0.98605 0.98969 1.00877 1.18655 0.90758 0.93762 0.78856 0.93294 1.21173 1.32496 1.13258 0.90298 0.92186 1.24874 0.94833 0.94965 0.99003 1.69896 1.35815 1.22366 1.23985 0.86495 0.79175 0.79522 0.81807 1.20195 1.21123 1.20204 1.45823 1.68964 1.13320 1.09039 1.16197 0.78760 0.85582 0.80304 1.90927 1.56312 1.14010 1.84151 1.44733 1.73679 1.10932 1.09416 1.22173 0.92533 0.94498 0.87305 1.21044 0.85582 0.81292 0.73336 1.93297 1.92803 1.53227 1.74895 1.93157 1.60646 1.78667 1.84179 1.93111 1.92526 1.91481 1.39803 1.23235 0.96203 0.97312 0.99937 1.22782 0.95086 0.97924 1.01113 1.23355 0.98721 1.00188 0.94617 0.89178 0.96621 0.95611 0.92514 0.78325 0.76386 0.88777 0.88039 0.89398 0.90318 0.89628 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.28 7.18 2.56 -69.08 -0.18 7.01 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.72 -14.91 5.07 -59.81 -0.30 -15.21 16 13 C 0.69 13.72 8.10 -86.91 -0.70 13.01 16 14 O -0.58 -13.62 12.70 5.29 0.07 -13.55 16 15 N -0.73 -10.57 4.89 -51.52 -0.25 -10.82 16 16 C 0.13 1.68 0.74 -130.87 -0.10 1.58 16 17 C 0.44 6.82 2.76 37.15 0.10 6.92 16 18 F -0.16 -3.07 15.24 2.25 0.03 -3.04 16 19 F -0.19 -2.97 17.07 2.25 0.04 -2.93 16 20 F -0.19 -2.50 15.81 2.25 0.04 -2.46 16 21 C -0.13 -1.62 6.62 -25.92 -0.17 -1.79 16 22 C -0.13 -1.19 7.98 -25.92 -0.21 -1.40 16 23 C -0.13 -1.16 7.27 -25.78 -0.19 -1.35 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.38 6.82 8.56 -40.82 -0.35 6.47 16 29 H 0.40 4.51 8.74 -40.82 -0.36 4.15 16 30 H 0.09 1.08 8.03 -51.93 -0.42 0.67 16 31 H 0.10 1.60 6.72 -51.93 -0.35 1.25 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.11 0.84 7.03 -51.93 -0.37 0.48 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -31.24 301.75 -5.92 -37.15 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.20 Total: 7.07 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.49 Total: 7.91 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.07 Total: -50.39 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.11 Total: -8.43 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.24 -5.92 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.961 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds