Wall clock time and date at job start Tue Mar 31 2020 01:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00070 * 2 1 4 4 C 1.38750 * 120.05368 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94330 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05275 * 359.97438 * 5 4 3 7 7 N 1.48003 * 119.94281 * 180.02562 * 6 5 4 8 8 O 1.21804 * 120.00016 * 0.02562 * 7 6 5 9 9 O 1.21801 * 120.00295 * 179.97438 * 7 6 5 10 10 C 1.38240 * 120.11292 * 359.78674 * 6 5 4 11 11 C 1.38167 * 120.05722 * 0.46640 * 10 6 5 12 12 C 1.50695 * 120.03078 * 179.79084 * 11 10 6 13 13 N 1.46903 * 109.47210 * 259.72005 * 12 11 10 14 14 C 1.46906 * 111.00007 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.46916 * 34.99813 * 14 13 12 16 16 C 1.52995 * 109.46989 * 275.00087 * 14 13 12 17 17 C 1.50698 * 109.46976 * 155.00130 * 14 13 12 18 18 H 1.08002 * 119.99986 * 34.99812 * 17 14 13 19 19 C 1.37873 * 120.00109 * 215.00110 * 17 14 13 20 20 N 1.31512 * 120.00418 * 184.91561 * 19 17 14 21 21 Si 1.86807 * 119.99722 * 4.91405 * 19 17 14 22 22 H 1.48503 * 109.47044 * 84.83193 * 21 19 17 23 23 H 1.48503 * 109.47110 * 204.82819 * 21 19 17 24 24 H 1.48499 * 109.47347 * 324.83131 * 21 19 17 25 25 H 1.08994 * 109.47012 * 300.00294 * 1 2 3 26 26 H 1.08999 * 109.47099 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.03463 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.97387 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.97276 * 180.22787 * 10 6 5 31 31 H 1.09005 * 109.47242 * 139.72114 * 12 11 10 32 32 H 1.08998 * 109.47212 * 19.71942 * 12 11 10 33 33 H 1.00895 * 110.99893 * 303.95208 * 13 12 11 34 34 H 1.09005 * 109.47123 * 175.05356 * 16 14 13 35 35 H 1.09008 * 109.47122 * 55.05442 * 16 14 13 36 36 H 1.08996 * 109.47521 * 295.05628 * 16 14 13 37 37 H 0.96999 * 120.00184 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0016 7 7 3.9739 4.9944 0.0028 8 8 3.3106 6.0160 0.0037 9 8 5.1903 5.0582 0.0037 10 6 4.0560 2.5171 0.0061 11 6 3.4312 1.2848 0.0003 12 6 4.2537 0.0221 0.0003 13 7 4.3195 -0.5196 -1.3636 14 6 5.1159 -1.7534 -1.4022 15 1 4.9614 -2.3145 -0.4805 16 6 6.5979 -1.3997 -1.5415 17 6 4.6868 -2.5917 -2.5787 18 1 4.3801 -2.1151 -3.4981 19 6 4.6856 -3.9670 -2.4814 20 7 4.4047 -4.7006 -3.5361 21 14 5.0832 -4.7883 -0.8514 22 1 3.8526 -4.8673 -0.0238 23 1 5.6009 -6.1577 -1.1003 24 1 6.1118 -3.9929 -0.1341 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3204 0.0014 29 1 1.3341 4.5113 0.0011 30 1 5.1344 2.5751 0.0102 31 1 3.7924 -0.7121 0.6609 32 1 5.2612 0.2448 0.3518 33 1 3.3948 -0.6739 -1.7363 34 1 7.1957 -2.3092 -1.4819 35 1 6.8867 -0.7217 -0.7382 36 1 6.7672 -0.9160 -2.5035 37 1 4.4042 -5.6682 -3.4677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:37 Heat of formation + Delta-G solvation = -16.664929 kcal Electronic energy + Delta-G solvation = -21688.072417 eV Core-core repulsion = 18241.160946 eV Total energy + Delta-G solvation = -3446.911471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14679 -40.66516 -37.91611 -36.53457 -36.21803 -33.19268 -31.73187 -31.30958 -29.03745 -28.03028 -25.93992 -25.59476 -24.62782 -22.51630 -21.64302 -19.76705 -18.88278 -18.68175 -18.44332 -17.48833 -17.03650 -16.64332 -16.13210 -15.40303 -14.89956 -14.42877 -14.16566 -13.80009 -13.70502 -13.46118 -13.00128 -12.59994 -12.42285 -12.19386 -11.91588 -11.62942 -11.55477 -11.30151 -11.19573 -11.11699 -11.06927 -10.75043 -10.70249 -10.46276 -9.85864 -9.48876 -9.09827 -8.82090 -8.66259 -7.55146 -6.17940 -4.18920 -0.12433 0.76252 1.34798 1.44480 2.83086 3.11437 3.19074 3.28740 3.30130 4.13994 4.24123 4.31522 4.48400 4.63256 4.81055 4.86516 4.98615 5.09723 5.21632 5.28502 5.34318 5.43259 5.53016 5.64353 5.81053 6.02177 6.16322 6.36197 6.39978 6.59990 6.76123 6.81648 6.87236 7.34770 7.55640 7.68390 7.83450 8.28286 8.56415 8.90993 9.45635 10.94988 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.004584 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.422447 B = 6106.642218 C = 6993.581860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.293 6.293 3 C 0.188 3.812 4 C -0.212 4.212 5 C -0.019 4.019 6 C -0.087 4.087 7 N 0.039 4.961 8 O -0.177 6.177 9 O -0.166 6.166 10 C -0.002 4.002 11 C -0.097 4.097 12 C 0.100 3.900 13 N -0.677 5.677 14 C 0.180 3.820 15 H 0.006 0.994 16 C -0.126 4.126 17 C -0.518 4.518 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.875 3.125 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.343 0.657 34 H 0.042 0.958 35 H 0.021 0.979 36 H 0.052 0.948 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 12.254 10.188 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.203 6.203 3 C 0.140 3.860 4 C -0.231 4.231 5 C -0.039 4.039 6 C -0.170 4.170 7 N 0.555 4.445 8 O -0.389 6.389 9 O -0.381 6.381 10 C -0.022 4.022 11 C -0.099 4.099 12 C -0.030 4.030 13 N -0.310 5.310 14 C 0.072 3.928 15 H 0.023 0.977 16 C -0.185 4.185 17 C -0.556 4.556 18 H 0.097 0.903 19 C -0.128 4.128 20 N -0.533 5.533 21 Si 0.702 3.298 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.177 0.823 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.237 11.609 9.923 17.351 hybrid contribution -0.568 -0.706 1.164 1.475 sum -8.805 10.903 11.087 17.869 Atomic orbital electron populations 1.23261 0.77359 1.05145 1.01596 1.86260 1.22200 1.25585 1.86304 1.19311 0.92077 0.84906 0.89705 1.21189 1.01035 0.90707 1.10169 1.20706 0.91452 0.99340 0.92374 1.20919 0.93168 0.82775 1.20186 1.43519 1.01041 1.02869 0.97035 1.94501 1.65514 1.24585 1.54330 1.94544 0.95887 1.93957 1.53721 1.20754 1.01797 0.88467 0.91189 1.19383 0.90543 0.95961 1.04045 1.20829 0.97789 0.90715 0.93634 1.60859 1.20316 1.33381 1.16401 1.19589 0.90823 0.86188 0.96164 0.97669 1.21856 0.97782 0.98987 0.99837 1.21039 1.45035 0.90541 0.99022 0.90274 1.25018 0.94313 0.97278 0.96209 1.69896 1.48795 1.05658 1.28905 0.86897 0.79238 0.78856 0.84760 1.20341 1.21354 1.18951 0.92265 0.91851 0.87292 0.83260 0.83011 0.82276 0.94047 0.90280 0.83809 0.93943 0.96006 0.92876 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.29 -3.63 9.68 -19.43 -0.19 -3.82 16 3 C 0.19 2.30 6.66 -39.22 -0.26 2.04 16 4 C -0.21 -2.04 9.04 -39.43 -0.36 -2.40 16 5 C -0.02 -0.20 9.55 -39.60 -0.38 -0.58 16 6 C -0.09 -1.12 6.85 -79.94 -0.55 -1.66 16 7 N 0.04 0.57 4.45 33.97 0.15 0.72 16 8 O -0.18 -2.59 18.44 -29.46 -0.54 -3.14 16 9 O -0.17 -2.58 18.44 -29.46 -0.54 -3.12 16 10 C 0.00 -0.03 9.17 -39.61 -0.36 -0.39 16 11 C -0.10 -1.34 5.41 -104.48 -0.56 -1.90 16 12 C 0.10 1.60 5.28 -4.98 -0.03 1.57 16 13 N -0.68 -13.36 6.29 -109.22 -0.69 -14.05 16 14 C 0.18 4.11 2.26 -68.86 -0.16 3.95 16 15 H 0.01 0.13 4.95 -51.93 -0.26 -0.13 16 16 C -0.13 -2.68 9.42 37.16 0.35 -2.33 16 17 C -0.52 -14.02 8.84 -34.44 -0.30 -14.32 16 18 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 21 Si 0.88 20.84 26.99 -169.99 -4.59 16.25 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.26 -6.07 6.82 56.52 0.39 -5.69 16 25 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.15 0.96 6.30 -52.49 -0.33 0.63 16 29 H 0.15 1.28 7.60 -52.49 -0.40 0.88 16 30 H 0.16 2.00 7.58 -52.49 -0.40 1.61 16 31 H 0.04 0.68 7.77 -51.93 -0.40 0.28 16 32 H 0.08 1.20 7.22 -51.93 -0.37 0.83 16 33 H 0.34 6.99 8.29 -39.29 -0.33 6.67 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.40 7.35 -51.92 -0.38 0.01 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -30.90 320.23 -7.02 -37.92 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.51 Total: 3.04 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.71 Total: -12.90 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.24 Total: -39.06 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.27 Total: -10.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.59 Total: 16.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.90 -7.02 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.254 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds