Wall clock time and date at job start Tue Mar 31 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00070 * 2 1 4 4 C 1.38750 * 120.05368 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94330 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05275 * 359.97438 * 5 4 3 7 7 N 1.48003 * 119.94281 * 180.02562 * 6 5 4 8 8 O 1.21804 * 120.00016 * 0.02562 * 7 6 5 9 9 O 1.21801 * 120.00295 * 179.97438 * 7 6 5 10 10 C 1.38240 * 120.11292 * 359.78674 * 6 5 4 11 11 C 1.38167 * 120.05722 * 0.46640 * 10 6 5 12 12 C 1.50695 * 120.03078 * 179.79084 * 11 10 6 13 13 N 1.46903 * 109.47210 * 259.72005 * 12 11 10 14 14 C 1.46906 * 111.00007 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.46916 * 34.99813 * 14 13 12 16 16 C 1.52995 * 109.46989 * 275.00087 * 14 13 12 17 17 C 1.50698 * 109.46976 * 155.00130 * 14 13 12 18 18 H 1.08002 * 119.99986 * 34.99812 * 17 14 13 19 19 C 1.37873 * 120.00109 * 215.00110 * 17 14 13 20 20 N 1.31512 * 120.00418 * 184.91561 * 19 17 14 21 21 Si 1.86807 * 119.99722 * 4.91405 * 19 17 14 22 22 H 1.48503 * 109.47044 * 84.83193 * 21 19 17 23 23 H 1.48503 * 109.47110 * 204.82819 * 21 19 17 24 24 H 1.48499 * 109.47347 * 324.83131 * 21 19 17 25 25 H 1.08994 * 109.47012 * 300.00294 * 1 2 3 26 26 H 1.08999 * 109.47099 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.03463 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.97387 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.97276 * 180.22787 * 10 6 5 31 31 H 1.09005 * 109.47242 * 139.72114 * 12 11 10 32 32 H 1.08998 * 109.47212 * 19.71942 * 12 11 10 33 33 H 1.00895 * 110.99893 * 303.95208 * 13 12 11 34 34 H 1.09005 * 109.47123 * 175.05356 * 16 14 13 35 35 H 1.09008 * 109.47122 * 55.05442 * 16 14 13 36 36 H 1.08996 * 109.47521 * 295.05628 * 16 14 13 37 37 H 0.96999 * 120.00184 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0016 7 7 3.9739 4.9944 0.0028 8 8 3.3106 6.0160 0.0037 9 8 5.1903 5.0582 0.0037 10 6 4.0560 2.5171 0.0061 11 6 3.4312 1.2848 0.0003 12 6 4.2537 0.0221 0.0003 13 7 4.3195 -0.5196 -1.3636 14 6 5.1159 -1.7534 -1.4022 15 1 4.9614 -2.3145 -0.4805 16 6 6.5979 -1.3997 -1.5415 17 6 4.6868 -2.5917 -2.5787 18 1 4.3801 -2.1151 -3.4981 19 6 4.6856 -3.9670 -2.4814 20 7 4.4047 -4.7006 -3.5361 21 14 5.0832 -4.7883 -0.8514 22 1 3.8526 -4.8673 -0.0238 23 1 5.6009 -6.1577 -1.1003 24 1 6.1118 -3.9929 -0.1341 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3204 0.0014 29 1 1.3341 4.5113 0.0011 30 1 5.1344 2.5751 0.0102 31 1 3.7924 -0.7121 0.6609 32 1 5.2612 0.2448 0.3518 33 1 3.3948 -0.6739 -1.7363 34 1 7.1957 -2.3092 -1.4819 35 1 6.8867 -0.7217 -0.7382 36 1 6.7672 -0.9160 -2.5035 37 1 4.4042 -5.6682 -3.4677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:36 Heat of formation + Delta-G solvation = -37.105405 kcal Electronic energy + Delta-G solvation = -21688.958782 eV Core-core repulsion = 18241.160946 eV Total energy + Delta-G solvation = -3447.797837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.21616 -41.58317 -38.83636 -37.81213 -37.61893 -34.84762 -33.35077 -32.22784 -30.53620 -28.76278 -27.40526 -26.90522 -26.10104 -23.42906 -22.73909 -21.57027 -19.98909 -19.77169 -19.31268 -18.97098 -18.57030 -17.59688 -17.08741 -16.84884 -15.88081 -15.74389 -15.62642 -15.13928 -14.85304 -14.56539 -14.44810 -13.92963 -13.81477 -13.45566 -13.04687 -12.85299 -12.71141 -12.64858 -12.59926 -12.35763 -12.26918 -12.26699 -12.22610 -11.93514 -11.81970 -11.06978 -10.77392 -10.40403 -9.78196 -9.12833 -8.32016 -6.37798 -1.16253 -0.13377 0.32393 0.42715 1.31450 1.34440 1.44597 2.04387 2.18757 2.31156 3.01696 3.23475 3.41262 3.57192 3.68257 3.82621 4.08334 4.16996 4.29064 4.36701 4.47617 4.51431 4.61489 4.68211 4.73354 4.80318 4.85137 4.88568 4.99732 5.09603 5.16576 5.36318 5.49728 5.69272 5.98650 6.07795 6.49549 6.54747 6.64728 6.79780 7.31401 8.84664 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.004584 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.422447 B = 6106.642218 C = 6993.581860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.319 6.319 3 C 0.189 3.811 4 C -0.196 4.196 5 C -0.007 4.007 6 C -0.102 4.102 7 N 0.041 4.959 8 O -0.169 6.169 9 O -0.205 6.205 10 C -0.003 4.003 11 C -0.118 4.118 12 C 0.104 3.896 13 N -0.680 5.680 14 C 0.183 3.817 15 H 0.007 0.993 16 C -0.123 4.123 17 C -0.520 4.520 18 H 0.035 0.965 19 C 0.019 3.981 20 N -0.944 5.944 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.247 1.247 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.189 0.811 29 H 0.178 0.822 30 H 0.157 0.843 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.337 0.663 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 13.087 12.290 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.230 6.230 3 C 0.140 3.860 4 C -0.215 4.215 5 C -0.026 4.026 6 C -0.186 4.186 7 N 0.553 4.447 8 O -0.386 6.386 9 O -0.412 6.412 10 C -0.023 4.023 11 C -0.120 4.120 12 C -0.025 4.025 13 N -0.312 5.312 14 C 0.075 3.925 15 H 0.025 0.975 16 C -0.181 4.181 17 C -0.559 4.559 18 H 0.053 0.947 19 C -0.179 4.179 20 N -0.584 5.584 21 Si 0.764 3.236 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.171 1.171 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.206 0.794 29 H 0.196 0.804 30 H 0.174 0.826 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.633 12.457 12.038 19.821 hybrid contribution -0.291 -0.910 0.450 1.056 sum -9.924 11.547 12.488 19.692 Atomic orbital electron populations 1.23604 0.75022 1.06244 1.03627 1.86233 1.24753 1.25985 1.86038 1.19452 0.91734 0.85886 0.88895 1.21540 1.02703 0.89105 1.08116 1.21083 0.90414 1.00747 0.90338 1.21045 0.94107 0.81590 1.21861 1.43751 1.00921 1.03437 0.96574 1.94468 1.65293 1.25275 1.53533 1.94548 0.96567 1.94271 1.55770 1.20699 1.01872 0.88595 0.91129 1.19141 0.91362 0.94879 1.06605 1.20778 0.98879 0.91659 0.91182 1.60744 1.19670 1.31582 1.19160 1.19460 0.92064 0.86898 0.94100 0.97499 1.21773 0.96561 0.99394 1.00405 1.21237 1.44418 0.91220 0.98977 0.94704 1.25854 0.94293 0.97936 0.99862 1.70045 1.50841 1.06051 1.31439 0.85855 0.79801 0.77727 0.80246 1.19206 1.21271 1.17071 0.89523 0.90392 0.86922 0.79355 0.80442 0.82590 0.94293 0.89510 0.84540 0.94352 0.92973 0.94029 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -7.23 9.68 -92.42 -0.89 -8.12 16 3 C 0.19 4.16 6.66 22.51 0.15 4.31 16 4 C -0.20 -3.00 9.04 22.37 0.20 -2.80 16 5 C -0.01 -0.12 9.55 22.26 0.21 0.10 16 6 C -0.10 -2.45 6.85 36.39 0.25 -2.20 16 7 N 0.04 1.14 4.45 -46.44 -0.21 0.94 16 8 O -0.17 -4.67 18.44 18.88 0.35 -4.32 16 9 O -0.20 -6.41 18.44 18.89 0.35 -6.06 16 10 C 0.00 -0.08 9.17 22.25 0.20 0.12 16 11 C -0.12 -3.08 5.41 -19.77 -0.11 -3.19 16 12 C 0.10 3.22 5.28 85.56 0.45 3.67 16 13 N -0.68 -26.66 6.29 -499.46 -3.14 -29.80 16 14 C 0.18 8.28 2.26 44.17 0.10 8.38 16 15 H 0.01 0.33 4.95 -2.39 -0.01 0.32 16 16 C -0.12 -5.11 9.42 71.98 0.68 -4.43 16 17 C -0.52 -28.82 8.84 25.60 0.23 -28.60 16 18 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 19 C 0.02 1.06 5.47 84.65 0.46 1.53 16 20 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 21 Si 0.94 42.64 26.99 68.60 1.85 44.50 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.25 -10.43 6.82 99.48 0.68 -9.75 16 25 H 0.09 0.60 7.66 -2.39 -0.02 0.58 16 26 H 0.08 0.74 7.66 -2.39 -0.02 0.72 16 27 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.19 1.38 6.30 -2.91 -0.02 1.36 16 29 H 0.18 2.20 7.60 -2.91 -0.02 2.18 16 30 H 0.16 3.92 7.58 -2.91 -0.02 3.90 16 31 H 0.04 1.23 7.77 -2.38 -0.02 1.21 16 32 H 0.09 2.51 7.22 -2.39 -0.02 2.49 16 33 H 0.34 13.85 8.29 -89.70 -0.74 13.11 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 1.83 7.35 -2.38 -0.02 1.81 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -68.70 320.23 2.88 -65.82 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.33 Total: 16.05 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.94 Total: -21.89 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.05 Total: -85.97 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.20 Total: -18.50 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.85 Total: 44.50 kcal Total: -68.70 2.88 -65.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.714 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds