Wall clock time and date at job start Tue Mar 31 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47473 * 2 1 4 4 C 1.50706 * 109.47302 * 120.00005 * 2 1 3 5 5 H 1.07993 * 120.00039 * 119.99557 * 4 2 1 6 6 C 1.37883 * 119.99727 * 300.00482 * 4 2 1 7 7 N 1.31512 * 119.99827 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00199 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47187 * 90.00142 * 8 6 4 10 10 H 1.48492 * 109.47299 * 210.00469 * 8 6 4 11 11 H 1.48502 * 109.47404 * 330.00785 * 8 6 4 12 12 N 1.46898 * 109.47374 * 239.99909 * 2 1 3 13 13 C 1.46895 * 111.00001 * 84.99910 * 12 2 1 14 14 H 1.09001 * 110.43810 * 323.91537 * 13 12 2 15 15 C 1.54631 * 110.48836 * 201.22948 * 13 12 2 16 16 C 1.54480 * 101.76379 * 216.52465 * 15 13 12 17 17 N 1.46766 * 105.47504 * 25.41563 * 16 15 13 18 18 C 1.46499 * 124.34634 * 163.00462 * 17 16 15 19 19 C 1.52998 * 109.47349 * 90.00069 * 18 17 16 20 20 F 1.39904 * 109.46765 * 59.99607 * 19 18 17 21 21 F 1.39903 * 109.47231 * 179.97438 * 19 18 17 22 22 F 1.39895 * 109.47181 * 299.99867 * 19 18 17 23 23 C 1.34417 * 111.29802 * 342.98327 * 17 16 15 24 24 O 1.21284 * 124.93817 * 180.42968 * 23 17 16 25 25 H 1.08999 * 109.47473 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47697 * 300.00095 * 1 2 3 27 27 H 1.08997 * 109.47288 * 60.00164 * 1 2 3 28 28 H 0.96998 * 119.99874 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00081 * 208.95742 * 12 2 1 30 30 H 1.08998 * 110.96818 * 98.41043 * 15 13 12 31 31 H 1.08998 * 110.97151 * 334.64246 * 15 13 12 32 32 H 1.09000 * 110.24742 * 266.41538 * 16 15 13 33 33 H 1.08996 * 110.24456 * 144.41810 * 16 15 13 34 34 H 1.09009 * 109.46817 * 210.00152 * 18 17 16 35 35 H 1.09002 * 109.47433 * 329.99790 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1371 -0.8596 3.5566 8 14 0.6257 1.2797 2.6542 9 1 -0.8022 0.8743 2.6993 10 1 0.9770 1.9953 3.9070 11 1 0.8488 2.1772 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3468 14 1 1.2525 0.9285 -2.3165 15 6 2.0730 -0.5716 -3.6736 16 6 3.0283 0.2681 -4.5502 17 7 3.9130 0.9647 -3.6088 18 6 5.1872 1.5865 -3.9777 19 6 4.9464 3.0428 -4.3803 20 9 4.3829 3.7370 -3.3042 21 9 6.1633 3.6367 -4.7320 22 9 4.0729 3.0864 -5.4722 23 6 3.4037 0.9592 -2.3649 24 8 3.9270 1.4708 -1.3977 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9031 -0.5280 4.4376 29 1 2.9172 -1.1205 -1.0286 30 1 1.0720 -0.5998 -4.1041 31 1 2.4619 -1.5794 -3.5278 32 1 2.4629 0.9893 -5.1404 33 1 3.6099 -0.3819 -5.2038 34 1 5.8678 1.5525 -3.1269 35 1 5.6262 1.0456 -4.8160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609561808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:54 Heat of formation + Delta-G solvation = -199.934753 kcal Electronic energy + Delta-G solvation = -23059.712341 eV Core-core repulsion = 19062.996953 eV Total energy + Delta-G solvation = -3996.715387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.14615 -48.67974 -48.64554 -41.65912 -37.69817 -37.56854 -34.90207 -33.47023 -30.92186 -29.22603 -27.50116 -26.76024 -24.63155 -22.60817 -22.04482 -20.84402 -19.61815 -19.52793 -18.92961 -18.77281 -17.97785 -17.23576 -16.81107 -16.45456 -15.63530 -15.54359 -15.47299 -15.12904 -15.09131 -14.92680 -14.82333 -14.79832 -14.71997 -14.22115 -14.16916 -13.81654 -13.61002 -13.27330 -13.10221 -12.87836 -12.76157 -12.29787 -12.13648 -11.86247 -11.46452 -11.31781 -11.08456 -10.77767 -10.03546 -9.24423 -8.33368 -6.35984 1.24240 1.24864 1.33236 1.41960 1.58500 1.87302 2.28783 2.77278 2.94335 3.02870 3.19752 3.20282 3.54371 3.68952 4.05277 4.13069 4.16597 4.23184 4.49686 4.56293 4.69416 4.71464 4.88360 5.00580 5.16879 5.24934 5.33181 5.49606 5.61502 5.81966 5.90964 6.33372 6.52053 6.72639 6.99056 7.29190 8.83385 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.005071 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.570792 B = 5520.662580 C = 5982.590696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.182 3.818 3 H -0.008 1.008 4 C -0.518 4.518 5 H 0.041 0.959 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.255 1.255 10 H -0.299 1.299 11 H -0.263 1.263 12 N -0.641 5.641 13 C 0.048 3.952 14 H 0.109 0.891 15 C -0.104 4.104 16 C 0.101 3.899 17 N -0.618 5.618 18 C 0.087 3.913 19 C 0.430 3.570 20 F -0.201 7.201 21 F -0.181 7.181 22 F -0.180 7.180 23 C 0.477 3.523 24 O -0.557 6.557 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.266 0.734 29 H 0.336 0.664 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 4.062 -24.451 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.072 3.928 3 H 0.009 0.991 4 C -0.557 4.557 5 H 0.059 0.941 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.777 3.223 9 H -0.181 1.181 10 H -0.227 1.227 11 H -0.188 1.188 12 N -0.270 5.270 13 C -0.066 4.066 14 H 0.127 0.873 15 C -0.142 4.142 16 C -0.020 4.020 17 N -0.353 5.353 18 C -0.038 4.038 19 C 0.375 3.625 20 F -0.183 7.183 21 F -0.163 7.163 22 F -0.161 7.161 23 C 0.264 3.736 24 O -0.433 6.433 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.175 4.112 -23.941 24.388 hybrid contribution 0.660 1.621 1.192 2.118 sum 2.835 5.734 -22.749 23.631 Atomic orbital electron populations 1.21977 0.96512 1.01579 0.99025 1.19426 0.93042 0.92270 0.88020 0.99069 1.21343 1.31150 1.12437 0.90739 0.94103 1.25730 0.97383 0.99686 0.95463 1.70023 1.47691 1.42370 0.98524 0.85854 0.79726 0.80014 0.76755 1.18090 1.22708 1.18799 1.60862 1.31914 1.29770 1.04502 1.22720 0.93397 0.95258 0.95197 0.87314 1.22682 1.02327 0.99020 0.90187 1.22599 0.91980 0.96016 0.91398 1.48328 1.21024 1.55960 1.09950 1.22698 0.87657 0.86353 1.07106 1.21649 0.73991 0.92400 0.74497 1.93215 1.85815 1.82500 1.56732 1.93188 1.44631 1.86301 1.92169 1.93171 1.70293 1.97165 1.55477 1.22847 0.89189 0.79098 0.82509 1.90779 1.66642 1.47129 1.38774 0.92059 0.95402 0.92019 0.92494 0.84647 0.86152 0.88665 0.89031 0.86029 0.86722 0.80897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.88 71.98 0.64 -5.02 16 2 C 0.18 8.79 1.95 44.17 0.09 8.88 16 3 H -0.01 -0.44 6.09 -2.39 -0.01 -0.46 16 4 C -0.52 -30.60 9.17 25.60 0.23 -30.36 16 5 H 0.04 2.63 7.86 -2.91 -0.02 2.61 16 6 C 0.02 0.91 5.45 84.66 0.46 1.37 16 7 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 8 Si 0.95 47.75 24.37 68.60 1.67 49.42 16 9 H -0.26 -11.82 6.87 99.48 0.68 -11.14 16 10 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 11 H -0.26 -12.96 6.53 99.48 0.65 -12.31 16 12 N -0.64 -24.91 6.09 -473.36 -2.88 -27.80 16 13 C 0.05 1.43 3.03 44.91 0.14 1.57 16 14 H 0.11 3.24 7.20 -2.39 -0.02 3.22 16 15 C -0.10 -1.72 6.88 31.65 0.22 -1.50 16 16 C 0.10 1.25 7.22 86.83 0.63 1.87 16 17 N -0.62 -13.21 2.81 -817.98 -2.30 -15.50 16 18 C 0.09 1.48 5.91 86.38 0.51 1.99 16 19 C 0.43 9.04 3.29 71.98 0.24 9.28 16 20 F -0.20 -6.07 16.95 44.97 0.76 -5.30 16 21 F -0.18 -3.67 17.32 44.97 0.78 -2.89 16 22 F -0.18 -3.44 17.09 44.97 0.77 -2.67 16 23 C 0.48 15.72 7.06 87.90 0.62 16.34 16 24 O -0.56 -25.01 16.67 -3.04 -0.05 -25.06 16 25 H 0.06 2.55 8.14 -2.39 -0.02 2.54 16 26 H 0.03 1.23 3.27 -2.39 -0.01 1.22 16 27 H 0.06 2.14 7.45 -2.39 -0.02 2.13 16 28 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 29 H 0.34 13.98 7.98 -89.70 -0.72 13.26 16 30 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 33 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 2.28 7.93 -2.38 -0.02 2.26 16 35 H 0.17 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -79.20 299.49 3.16 -76.04 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.34 Total: 9.94 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 3.77 Total: 4.42 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -4.88 Total: -103.90 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 2.31 Total: -10.87 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.67 Total: 49.42 kcal Total: -79.20 3.16 -76.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609561808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.892 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds