Wall clock time and date at job start Tue Mar 31 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46993 * 2 1 4 4 C 1.50698 * 109.47442 * 119.99983 * 2 1 3 5 5 H 1.08000 * 120.00372 * 119.99961 * 4 2 1 6 6 C 1.37878 * 119.99710 * 300.00048 * 4 2 1 7 7 N 1.31506 * 120.00241 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46734 * 90.00428 * 8 6 4 10 10 H 1.48497 * 109.47014 * 209.99911 * 8 6 4 11 11 H 1.48498 * 109.47411 * 330.00231 * 8 6 4 12 12 N 1.46908 * 109.47094 * 240.00064 * 2 1 3 13 13 C 1.46897 * 110.99734 * 84.99721 * 12 2 1 14 14 H 1.08997 * 110.54166 * 32.39016 * 13 12 2 15 15 C 1.54637 * 110.48198 * 154.99911 * 13 12 2 16 16 C 1.54480 * 101.79655 * 93.89850 * 15 13 12 17 17 N 1.46765 * 105.47306 * 25.39729 * 16 15 13 18 18 C 1.46505 * 124.34844 * 163.00486 * 17 16 15 19 19 C 1.52996 * 109.47068 * 90.00002 * 18 17 16 20 20 F 1.39896 * 109.47535 * 59.99912 * 19 18 17 21 21 F 1.39895 * 109.47052 * 180.02562 * 19 18 17 22 22 F 1.39903 * 109.47046 * 299.99654 * 19 18 17 23 23 C 1.34412 * 111.30144 * 342.98128 * 17 16 15 24 24 O 1.21285 * 124.94041 * 180.39194 * 23 17 16 25 25 H 1.08992 * 109.47054 * 299.99844 * 1 2 3 26 26 H 1.08996 * 109.47518 * 60.00519 * 1 2 3 27 27 H 1.09000 * 109.46993 * 179.97438 * 1 2 3 28 28 H 0.97006 * 120.00117 * 179.97438 * 7 6 4 29 29 H 1.00903 * 110.99602 * 208.95184 * 12 2 1 30 30 H 1.09002 * 110.97169 * 335.76121 * 15 13 12 31 31 H 1.09003 * 110.96908 * 212.03656 * 15 13 12 32 32 H 1.09000 * 110.24248 * 144.39497 * 16 15 13 33 33 H 1.08995 * 110.24637 * 266.30774 * 16 15 13 34 34 H 1.08999 * 109.46787 * 209.99873 * 18 17 16 35 35 H 1.09004 * 109.46951 * 330.00108 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6298 -0.5457 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4860 -2.5661 3.7120 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2226 -2.3469 14 1 2.3186 1.2342 -2.0169 15 6 3.1277 -0.2693 -3.3748 16 6 2.2529 -1.0938 -4.3450 17 7 0.9016 -0.5336 -4.2261 18 6 -0.1723 -0.7520 -5.1984 19 6 -0.9676 -1.9995 -4.8083 20 9 -1.5201 -1.8212 -3.5355 21 9 -1.9927 -2.2083 -5.7371 22 9 -0.1168 -3.1100 -4.7960 23 6 0.7756 0.2050 -3.1102 24 8 -0.2376 0.7755 -2.7655 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7081 1.1608 3.4844 29 1 2.9173 -1.1205 -1.0287 30 1 3.8790 -0.8979 -2.8968 31 1 3.5947 0.5709 -3.8887 32 1 2.6176 -0.9854 -5.3665 33 1 2.2542 -2.1442 -4.0541 34 1 -0.8352 0.1132 -5.2080 35 1 0.2582 -0.8910 -6.1901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609561810.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:58 Heat of formation + Delta-G solvation = -200.651337 kcal Electronic energy + Delta-G solvation = -23296.942546 eV Core-core repulsion = 19300.196086 eV Total energy + Delta-G solvation = -3996.746461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.06921 -48.60522 -48.57199 -41.54270 -37.70710 -37.35113 -34.92591 -33.10861 -30.30087 -29.07265 -27.53160 -26.85836 -24.58021 -22.74740 -22.06082 -20.74826 -19.52596 -19.45307 -18.77194 -18.51271 -17.34254 -17.14613 -16.73061 -16.43383 -15.75418 -15.48180 -15.45542 -15.07375 -14.99800 -14.79530 -14.74296 -14.69715 -14.61422 -14.42763 -13.66873 -13.51828 -13.41309 -13.12891 -12.83615 -12.78497 -12.50387 -12.38789 -12.15973 -12.05688 -11.64484 -11.03104 -10.77293 -10.47136 -9.94446 -9.20157 -8.12113 -6.28251 1.28866 1.41378 1.43844 1.54156 1.74800 1.92499 2.41373 2.85398 3.01214 3.15836 3.27775 3.44738 3.52567 3.74094 4.01302 4.12951 4.24565 4.37718 4.61164 4.72350 4.84173 5.02749 5.09865 5.25276 5.26180 5.38868 5.49802 5.64840 5.79973 5.97893 6.20182 6.39336 6.70824 6.98121 7.12449 7.42187 8.93483 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004996 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.825077 B = 5602.714132 C = 5909.747380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.224 3.776 3 H -0.028 1.028 4 C -0.537 4.537 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.266 1.266 12 N -0.667 5.667 13 C 0.045 3.955 14 H 0.058 0.942 15 C -0.119 4.119 16 C 0.107 3.893 17 N -0.615 5.615 18 C 0.092 3.908 19 C 0.425 3.575 20 F -0.201 7.201 21 F -0.182 7.182 22 F -0.184 7.184 23 C 0.526 3.474 24 O -0.551 6.551 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.006 0.994 28 H 0.261 0.739 29 H 0.351 0.649 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -4.415 -20.589 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.116 3.884 3 H -0.011 1.011 4 C -0.576 4.576 5 H 0.085 0.915 6 C -0.191 4.191 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.190 1.190 12 N -0.302 5.302 13 C -0.069 4.069 14 H 0.076 0.924 15 C -0.157 4.157 16 C -0.014 4.014 17 N -0.349 5.349 18 C -0.033 4.033 19 C 0.369 3.631 20 F -0.183 7.183 21 F -0.163 7.163 22 F -0.166 7.166 23 C 0.314 3.686 24 O -0.427 6.427 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.172 0.828 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.482 -4.286 -20.478 21.210 hybrid contribution 0.147 0.056 1.679 1.686 sum 3.629 -4.230 -18.800 19.609 Atomic orbital electron populations 1.21825 0.98669 0.97764 1.00500 1.18909 0.92109 0.90615 0.86762 1.01074 1.21613 1.31735 1.12836 0.91399 0.91503 1.25833 0.95127 0.95704 1.02413 1.70083 1.37416 1.24410 1.24095 0.85416 0.78003 0.79042 0.78281 1.19517 1.21393 1.19045 1.60349 1.33140 1.32319 1.04430 1.22326 0.93810 0.97307 0.93421 0.92385 1.22902 0.96097 1.01741 0.94971 1.22432 0.78331 0.97919 1.02707 1.48145 1.13666 1.50343 1.22706 1.22733 0.90781 0.93794 0.95997 1.21841 0.79075 0.87754 0.74446 1.93238 1.86806 1.95453 1.42811 1.93174 1.61692 1.95790 1.65676 1.93167 1.70312 1.56880 1.96221 1.21393 0.89927 0.76539 0.80722 1.90600 1.34991 1.47294 1.69804 0.93474 0.93382 0.97432 0.92970 0.82818 0.87115 0.86809 0.85395 0.90653 0.85901 0.80602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.41 9.01 71.98 0.65 -6.77 16 2 C 0.22 11.98 2.60 44.16 0.11 12.10 16 3 H -0.03 -1.66 7.44 -2.39 -0.02 -1.68 16 4 C -0.54 -30.07 8.59 25.60 0.22 -29.85 16 5 H 0.07 3.55 7.62 -2.91 -0.02 3.53 16 6 C 0.01 0.47 5.30 84.66 0.45 0.92 16 7 N -0.92 -55.77 11.32 21.45 0.24 -55.53 16 8 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 N -0.67 -27.62 6.18 -473.24 -2.93 -30.55 16 13 C 0.05 1.51 3.25 44.93 0.15 1.66 16 14 H 0.06 2.16 7.44 -2.39 -0.02 2.14 16 15 C -0.12 -2.19 6.84 31.65 0.22 -1.98 16 16 C 0.11 1.71 7.22 86.83 0.63 2.33 16 17 N -0.61 -14.75 2.81 -817.91 -2.29 -17.05 16 18 C 0.09 1.69 5.91 86.38 0.51 2.20 16 19 C 0.42 10.57 3.29 71.98 0.24 10.81 16 20 F -0.20 -7.26 16.95 44.97 0.76 -6.50 16 21 F -0.18 -4.13 17.32 44.97 0.78 -3.35 16 22 F -0.18 -4.56 17.09 44.97 0.77 -3.79 16 23 C 0.53 18.67 6.94 87.92 0.61 19.28 16 24 O -0.55 -24.79 14.56 -3.04 -0.04 -24.83 16 25 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 26 H 0.05 2.70 4.48 -2.39 -0.01 2.69 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 29 H 0.35 12.98 7.55 -89.69 -0.68 12.30 16 30 H 0.11 1.75 7.56 -2.39 -0.02 1.73 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 34 H 0.12 2.36 7.93 -2.39 -0.02 2.34 16 35 H 0.18 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -77.30 301.12 3.55 -73.76 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.46 Total: 10.80 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 3.78 Total: 10.70 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -4.98 Total: -103.13 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.04 Total: -24.83 kcal Atomic # 9 Polarization: -15.95 SS G_CDS: 2.31 Total: -13.64 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -77.30 3.55 -73.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609561810.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.894 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds