Wall clock time and date at job start Tue Mar 31 2020 02:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47165 * 2 1 4 4 C 1.35354 * 117.00230 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.44875 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.38455 * 179.97438 * 5 4 3 7 7 C 1.47368 * 126.41472 * 179.97438 * 6 5 4 8 8 O 1.21617 * 120.00041 * 174.70340 * 7 6 5 9 9 N 1.34774 * 119.99674 * 354.70343 * 7 6 5 10 10 C 1.46507 * 119.99654 * 185.56425 * 9 7 6 11 11 C 1.53002 * 109.46722 * 185.19412 * 10 9 7 12 12 C 1.50704 * 115.55080 * 57.84580 * 11 10 9 13 13 H 1.07999 * 119.99810 * 264.63393 * 12 11 10 14 14 C 1.37875 * 120.00033 * 84.63305 * 12 11 10 15 15 N 1.31518 * 120.00263 * 1.97394 * 14 12 11 16 16 Si 1.86802 * 120.00000 * 181.97591 * 14 12 11 17 17 H 1.48501 * 109.46967 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47261 * 119.99996 * 16 14 12 19 19 H 1.48496 * 109.47403 * 240.00212 * 16 14 12 20 20 C 1.52993 * 117.50160 * 272.17056 * 11 10 9 21 21 C 1.52998 * 117.49712 * 203.50658 * 11 10 9 22 22 C 1.35916 * 107.17158 * 0.02562 * 6 5 4 23 23 O 1.34205 * 125.44616 * 359.69860 * 4 3 2 24 24 H 1.08998 * 109.46765 * 299.99987 * 1 2 3 25 25 H 1.08998 * 109.46714 * 60.00048 * 1 2 3 26 26 H 1.08992 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47498 * 240.00060 * 2 1 3 28 28 H 1.09002 * 109.47308 * 120.00377 * 2 1 3 29 29 H 0.96995 * 120.00498 * 5.56680 * 9 7 6 30 30 H 1.08993 * 109.46963 * 305.19432 * 10 9 7 31 31 H 1.08996 * 109.46823 * 65.19911 * 10 9 7 32 32 H 0.97001 * 120.00129 * 185.01126 * 15 14 12 33 33 H 1.08999 * 117.49884 * 359.97438 * 20 11 10 34 34 H 1.08997 * 117.49810 * 145.02498 * 20 11 10 35 35 H 1.08997 * 117.50057 * 214.97928 * 21 11 10 36 36 H 1.09004 * 117.49566 * 359.97438 * 21 11 10 37 37 H 1.07997 * 126.45437 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6782 0.0011 6 6 5.3040 2.4524 0.0021 7 6 6.3632 3.4771 0.0025 8 8 7.5293 3.1462 0.1006 9 7 6.0394 4.7808 -0.1060 10 6 7.0946 5.7898 -0.2284 11 6 6.4699 7.1863 -0.2052 12 6 5.6532 7.5128 1.0186 13 1 4.5820 7.3754 1.0054 14 6 6.2734 7.9867 2.1551 15 7 7.5727 8.1907 2.1587 16 14 5.2684 8.3390 3.6898 17 1 3.8398 8.0296 3.4278 18 1 5.7609 7.4956 4.8084 19 1 5.4054 9.7723 4.0530 20 6 6.0100 7.7768 -1.5395 21 6 7.2619 8.3253 -0.8502 22 6 5.4847 1.1053 0.0015 23 8 4.2631 0.5428 0.0068 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.1079 5.0512 -0.1029 30 1 7.7914 5.6896 0.6037 31 1 7.6276 5.6459 -1.1682 32 1 8.0200 8.4543 2.9781 33 1 6.1529 7.1707 -2.4341 34 1 5.1170 8.4017 -1.5322 35 1 7.1919 9.3108 -0.3899 36 1 8.2283 8.0798 -1.2908 37 1 6.4309 0.5847 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619545130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:34 Heat of formation + Delta-G solvation = -24.564085 kcal Electronic energy + Delta-G solvation = -21386.408958 eV Core-core repulsion = 17939.154954 eV Total energy + Delta-G solvation = -3447.254004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41636 -39.23846 -38.77622 -36.63461 -34.88460 -33.22227 -32.23214 -31.90739 -29.54614 -26.68009 -25.32890 -24.09861 -23.29734 -22.18997 -21.11430 -20.16912 -19.46068 -18.67825 -17.63791 -17.04714 -16.42324 -16.02086 -15.79219 -15.09988 -14.90292 -14.65194 -14.39225 -13.86780 -13.50683 -13.22699 -13.11316 -12.96179 -12.61190 -12.12323 -11.94120 -11.58931 -11.52692 -10.95584 -10.90443 -10.84307 -10.69805 -10.46899 -10.20853 -9.81276 -9.41269 -9.00474 -8.70801 -8.43165 -8.27263 -8.00201 -6.02838 -4.10967 1.20175 1.81816 2.17205 2.66716 3.30486 3.39115 3.43150 3.70544 3.72250 4.41986 4.43177 4.43360 4.63908 4.75252 4.93125 5.12006 5.26500 5.32139 5.33025 5.41772 5.53096 5.61894 5.89457 6.07602 6.36309 6.50800 6.55172 6.58772 6.75488 6.88311 7.14733 7.24471 7.43192 7.51862 7.59257 7.87811 8.30922 8.39004 8.80130 8.91162 9.56393 11.05422 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.004340 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.761041 B = 6450.699442 C = 7105.982392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.245 6.245 4 C 0.376 3.624 5 N -0.448 5.448 6 C -0.032 4.032 7 C 0.589 3.411 8 O -0.551 6.551 9 N -0.677 5.677 10 C 0.161 3.839 11 C 0.024 3.976 12 C -0.496 4.496 13 H 0.062 0.938 14 C 0.074 3.926 15 N -0.876 5.876 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.211 4.211 21 C -0.143 4.143 22 C -0.012 4.012 23 O -0.230 6.230 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.412 0.588 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 -16.539 -5.086 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.154 6.154 4 C 0.130 3.870 5 N -0.193 5.193 6 C -0.152 4.152 7 C 0.372 3.628 8 O -0.431 6.431 9 N -0.324 5.324 10 C 0.038 3.962 11 C 0.023 3.977 12 C -0.533 4.533 13 H 0.080 0.920 14 C -0.130 4.130 15 N -0.512 5.512 16 Si 0.716 3.284 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.248 4.248 21 C -0.181 4.181 22 C -0.083 4.083 23 O -0.121 6.121 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.248 0.752 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.437 -15.940 -4.933 19.170 hybrid contribution -0.563 -0.537 0.980 1.251 sum -9.999 -16.476 -3.953 19.675 Atomic orbital electron populations 1.21806 0.91355 1.03481 1.04274 1.23018 0.96768 0.79643 1.02913 1.86388 1.09111 1.30483 1.89379 1.23325 0.83379 0.81694 0.98607 1.71201 1.04144 1.21252 1.22752 1.21973 0.90207 0.94241 1.08742 1.16687 0.85862 0.82223 0.78011 1.90788 1.18250 1.81644 1.52418 1.45812 1.12372 1.04740 1.69461 1.21074 0.88718 0.86891 0.99538 1.19033 0.98634 0.89022 0.91013 1.20408 0.93143 1.43941 0.95825 0.92021 1.24966 0.94999 0.94377 0.98661 1.70001 1.08237 1.45860 1.27129 0.86597 0.80675 0.77823 0.83325 1.19607 1.21011 1.21051 1.23051 0.99093 1.05979 0.96703 1.22471 0.92546 1.00120 1.02984 1.24906 0.85624 0.92987 1.04828 1.84351 1.16305 1.39230 1.72229 0.90924 0.90957 0.89593 0.90923 0.90906 0.75246 0.90635 0.94255 0.92997 0.91647 0.90307 0.89572 0.91756 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.39 6.38 37.16 0.24 0.62 16 3 O -0.25 -2.99 10.19 -40.98 -0.42 -3.40 16 4 C 0.38 5.39 8.98 52.22 0.47 5.86 16 5 N -0.45 -7.74 11.11 -11.71 -0.13 -7.87 16 6 C -0.03 -0.55 6.99 -82.98 -0.58 -1.13 16 7 C 0.59 11.93 7.80 -12.55 -0.10 11.83 16 8 O -0.55 -12.24 16.87 5.26 0.09 -12.15 16 9 N -0.68 -14.40 5.37 -61.40 -0.33 -14.73 16 10 C 0.16 3.72 5.57 -4.04 -0.02 3.70 16 11 C 0.02 0.57 1.51 -155.66 -0.23 0.34 16 12 C -0.50 -13.18 8.38 -34.44 -0.29 -13.47 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.07 2.01 5.43 -17.82 -0.10 1.91 16 15 N -0.88 -24.70 12.73 55.43 0.71 -24.00 16 16 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C -0.21 -4.52 9.94 -26.69 -0.27 -4.78 16 21 C -0.14 -3.32 9.26 -26.69 -0.25 -3.57 16 22 C -0.01 -0.15 11.93 29.90 0.36 0.20 16 23 O -0.23 -2.88 10.20 -17.75 -0.18 -3.06 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.41 8.66 7.98 -40.82 -0.33 8.33 16 30 H 0.08 1.97 8.09 -51.93 -0.42 1.55 16 31 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.23 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -31.29 331.42 -5.62 -36.91 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.94 Total: 6.00 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.39 Total: 1.08 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.25 Total: -46.61 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.51 Total: -18.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.29 -5.62 -36.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619545130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds