Wall clock time and date at job start Tue Mar 31 2020 02:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47165 * 2 1 4 4 C 1.35354 * 117.00230 * 179.97438 * 3 2 1 5 5 N 1.30550 * 125.44875 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.38455 * 179.97438 * 5 4 3 7 7 C 1.47368 * 126.41472 * 179.97438 * 6 5 4 8 8 O 1.21617 * 120.00041 * 174.70340 * 7 6 5 9 9 N 1.34774 * 119.99674 * 354.70343 * 7 6 5 10 10 C 1.46507 * 119.99654 * 185.56425 * 9 7 6 11 11 C 1.53002 * 109.46722 * 185.19412 * 10 9 7 12 12 C 1.50704 * 115.55080 * 57.84580 * 11 10 9 13 13 H 1.07999 * 119.99810 * 264.63393 * 12 11 10 14 14 C 1.37875 * 120.00033 * 84.63305 * 12 11 10 15 15 N 1.31518 * 120.00263 * 1.97394 * 14 12 11 16 16 Si 1.86802 * 120.00000 * 181.97591 * 14 12 11 17 17 H 1.48501 * 109.46967 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47261 * 119.99996 * 16 14 12 19 19 H 1.48496 * 109.47403 * 240.00212 * 16 14 12 20 20 C 1.52993 * 117.50160 * 272.17056 * 11 10 9 21 21 C 1.52998 * 117.49712 * 203.50658 * 11 10 9 22 22 C 1.35916 * 107.17158 * 0.02562 * 6 5 4 23 23 O 1.34205 * 125.44616 * 359.69860 * 4 3 2 24 24 H 1.08998 * 109.46765 * 299.99987 * 1 2 3 25 25 H 1.08998 * 109.46714 * 60.00048 * 1 2 3 26 26 H 1.08992 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47498 * 240.00060 * 2 1 3 28 28 H 1.09002 * 109.47308 * 120.00377 * 2 1 3 29 29 H 0.96995 * 120.00498 * 5.56680 * 9 7 6 30 30 H 1.08993 * 109.46963 * 305.19432 * 10 9 7 31 31 H 1.08996 * 109.46823 * 65.19911 * 10 9 7 32 32 H 0.97001 * 120.00129 * 185.01126 * 15 14 12 33 33 H 1.08999 * 117.49884 * 359.97438 * 20 11 10 34 34 H 1.08997 * 117.49810 * 145.02498 * 20 11 10 35 35 H 1.08997 * 117.50057 * 214.97928 * 21 11 10 36 36 H 1.09004 * 117.49566 * 359.97438 * 21 11 10 37 37 H 1.07997 * 126.45437 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3482 1.5246 0.0005 5 7 3.9595 2.6782 0.0011 6 6 5.3040 2.4524 0.0021 7 6 6.3632 3.4771 0.0025 8 8 7.5293 3.1462 0.1006 9 7 6.0394 4.7808 -0.1060 10 6 7.0946 5.7898 -0.2284 11 6 6.4699 7.1863 -0.2052 12 6 5.6532 7.5128 1.0186 13 1 4.5820 7.3754 1.0054 14 6 6.2734 7.9867 2.1551 15 7 7.5727 8.1907 2.1587 16 14 5.2684 8.3390 3.6898 17 1 3.8398 8.0296 3.4278 18 1 5.7609 7.4956 4.8084 19 1 5.4054 9.7723 4.0530 20 6 6.0100 7.7768 -1.5395 21 6 7.2619 8.3253 -0.8502 22 6 5.4847 1.1053 0.0015 23 8 4.2631 0.5428 0.0068 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.1079 5.0512 -0.1029 30 1 7.7914 5.6896 0.6037 31 1 7.6276 5.6459 -1.1682 32 1 8.0200 8.4543 2.9781 33 1 6.1529 7.1707 -2.4341 34 1 5.1170 8.4017 -1.5322 35 1 7.1919 9.3108 -0.3899 36 1 8.2283 8.0798 -1.2908 37 1 6.4309 0.5847 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619545130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:33 Heat of formation + Delta-G solvation = -48.698878 kcal Electronic energy + Delta-G solvation = -21387.455521 eV Core-core repulsion = 17939.154954 eV Total energy + Delta-G solvation = -3448.300567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.53007 -40.59810 -39.90971 -38.45715 -36.07518 -34.91814 -33.95972 -32.85591 -30.66661 -28.39679 -27.31263 -25.01922 -24.40421 -23.24360 -22.88915 -21.50930 -21.24566 -20.00730 -18.63860 -18.45357 -17.98796 -17.34672 -16.75410 -16.60827 -16.51977 -16.09021 -15.99982 -15.54239 -14.83292 -14.55030 -14.29268 -13.91422 -13.79567 -13.55936 -13.45918 -12.90525 -12.86722 -12.65992 -12.51296 -12.36389 -12.01677 -11.86799 -11.77388 -11.52171 -11.23495 -10.96503 -10.41837 -10.13578 -9.90683 -9.67934 -8.10561 -6.22753 0.04818 0.83484 0.94494 1.38873 1.42470 1.52331 1.69147 2.23460 2.24676 2.42910 3.17930 3.37412 3.57428 3.75650 3.94293 3.97820 4.10824 4.25242 4.28133 4.40756 4.54162 4.64818 4.68993 4.70798 4.84893 4.87952 5.00512 5.04326 5.19566 5.29738 5.50629 5.58745 5.65932 5.70048 5.77807 6.37064 6.40138 6.71394 6.84226 7.18491 7.46589 8.97371 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017166 B = 0.004340 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.761041 B = 6450.699442 C = 7105.982392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.040 3.960 3 O -0.257 6.257 4 C 0.385 3.615 5 N -0.487 5.487 6 C -0.074 4.074 7 C 0.591 3.409 8 O -0.577 6.577 9 N -0.682 5.682 10 C 0.176 3.824 11 C -0.002 4.002 12 C -0.502 4.502 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.904 5.904 16 Si 0.944 3.056 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.280 1.280 20 C -0.181 4.181 21 C -0.148 4.148 22 C 0.031 3.969 23 O -0.213 6.213 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.412 0.588 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 -18.531 -5.607 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.166 6.166 4 C 0.138 3.862 5 N -0.233 5.233 6 C -0.191 4.191 7 C 0.377 3.623 8 O -0.459 6.459 9 N -0.329 5.329 10 C 0.052 3.948 11 C -0.002 4.002 12 C -0.540 4.540 13 H 0.074 0.926 14 C -0.173 4.173 15 N -0.542 5.542 16 Si 0.770 3.230 17 H -0.191 1.191 18 H -0.213 1.213 19 H -0.206 1.206 20 C -0.218 4.218 21 C -0.186 4.186 22 C -0.042 4.042 23 O -0.103 6.103 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.248 0.752 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -10.873 -17.942 -5.462 21.679 hybrid contribution -0.209 -0.036 1.111 1.131 sum -11.082 -17.978 -4.351 21.563 Atomic orbital electron populations 1.21864 0.89787 1.05105 1.03804 1.23467 0.97960 0.77736 1.04228 1.86433 1.07719 1.33425 1.89012 1.23284 0.84238 0.81356 0.97316 1.71057 1.04496 1.23138 1.24592 1.21517 0.89745 0.94769 1.13115 1.17021 0.86374 0.82266 0.76677 1.90758 1.19567 1.82029 1.53523 1.45749 1.11790 1.05082 1.70263 1.20715 0.88567 0.87102 0.98404 1.19078 0.99693 0.89654 0.91810 1.20652 0.93135 1.43209 0.96968 0.92595 1.25624 0.95844 0.94598 1.01238 1.70101 1.09436 1.47075 1.27594 0.85721 0.79516 0.77582 0.80147 1.19118 1.21274 1.20635 1.23042 0.98043 1.04682 0.96061 1.22392 0.93985 0.98742 1.03530 1.25543 0.86677 0.91716 1.00225 1.84411 1.15858 1.38373 1.71686 0.91534 0.91294 0.86841 0.89429 0.89749 0.75209 0.94465 0.93148 0.93197 0.89087 0.89974 0.91750 0.90627 0.71384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.04 0.50 6.38 71.98 0.46 0.96 16 3 O -0.26 -5.84 10.19 -64.23 -0.65 -6.50 16 4 C 0.38 10.39 8.98 130.43 1.17 11.56 16 5 N -0.49 -16.48 11.11 -419.38 -4.66 -21.14 16 6 C -0.07 -2.45 6.99 40.31 0.28 -2.17 16 7 C 0.59 23.98 7.80 86.65 0.68 24.65 16 8 O -0.58 -25.68 16.87 -4.09 -0.07 -25.75 16 9 N -0.68 -29.36 5.37 -466.42 -2.50 -31.86 16 10 C 0.18 8.27 5.57 86.38 0.48 8.75 16 11 C 0.00 -0.08 1.51 -52.93 -0.08 -0.16 16 12 C -0.50 -26.97 8.38 25.60 0.21 -26.76 16 13 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 14 C 0.03 1.52 5.43 84.65 0.46 1.98 16 15 N -0.90 -52.08 12.73 21.45 0.27 -51.80 16 16 Si 0.94 44.16 29.54 68.60 2.03 46.18 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 C -0.18 -7.53 9.94 30.62 0.30 -7.23 16 21 C -0.15 -6.88 9.26 30.62 0.28 -6.60 16 22 C 0.03 0.74 11.93 67.28 0.80 1.55 16 23 O -0.21 -4.73 10.20 18.89 0.19 -4.54 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.41 17.57 7.98 -92.71 -0.74 16.83 16 30 H 0.04 2.01 8.09 -2.39 -0.02 1.99 16 31 H 0.05 2.21 8.11 -2.39 -0.02 2.19 16 32 H 0.26 14.34 8.32 -92.71 -0.77 13.57 16 33 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 37 H 0.27 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -68.27 331.42 0.75 -67.52 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.35 Total: 21.87 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.79 Total: 6.02 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -6.89 Total: -104.81 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.53 Total: -36.78 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.27 0.75 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619545130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.818 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds