Wall clock time and date at job start Tue Mar 31 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47003 * 2 1 4 4 O 1.45204 * 109.47038 * 119.99374 * 2 1 3 5 5 C 1.34892 * 117.00371 * 270.00475 * 4 2 1 6 6 O 1.21626 * 119.99774 * 359.97438 * 5 4 2 7 7 C 1.46487 * 119.99944 * 179.72581 * 5 4 2 8 8 C 1.37996 * 126.25794 * 179.97438 * 7 5 4 9 9 C 1.39806 * 106.96537 * 179.84385 * 8 7 5 10 10 C 1.35485 * 107.84122 * 0.41422 * 9 8 7 11 11 N 1.34963 * 108.98748 * 359.74049 * 10 9 8 12 12 H 0.96993 * 125.63787 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47571 * 239.99859 * 2 1 3 14 14 O 1.21290 * 119.99456 * 248.56937 * 13 2 1 15 15 N 1.34766 * 120.00039 * 68.56488 * 13 2 1 16 16 C 1.46503 * 120.00232 * 4.58875 * 15 13 2 17 17 C 1.46508 * 120.00207 * 184.58519 * 15 13 2 18 18 C 1.50702 * 109.46622 * 89.99992 * 17 15 13 19 19 H 1.07995 * 120.00609 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99391 * 180.02562 * 18 17 15 21 21 N 1.31517 * 119.99570 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00416 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47206 * 89.99941 * 22 20 18 24 24 H 1.48501 * 109.47476 * 210.00325 * 22 20 18 25 25 H 1.48504 * 109.46993 * 330.00126 * 22 20 18 26 26 H 1.08995 * 109.46929 * 187.15245 * 1 2 3 27 27 H 1.09001 * 109.47238 * 307.15850 * 1 2 3 28 28 H 1.09003 * 109.46635 * 67.15662 * 1 2 3 29 29 H 1.07999 * 126.52034 * 359.97013 * 8 7 5 30 30 H 1.08000 * 126.07770 * 180.15091 * 9 8 7 31 31 H 1.08001 * 125.50619 * 179.70358 * 10 9 8 32 32 H 1.09004 * 109.46907 * 86.12019 * 16 15 13 33 33 H 1.08997 * 109.46939 * 206.11666 * 16 15 13 34 34 H 1.08992 * 109.46714 * 326.11798 * 16 15 13 35 35 H 1.08998 * 109.47317 * 210.00260 * 17 15 13 36 36 H 1.09004 * 109.46948 * 330.00855 * 17 15 13 37 37 H 0.96999 * 119.99466 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2180 0.0678 2.2866 6 8 1.9976 1.2636 2.2556 7 6 2.6999 -0.5563 3.5212 8 6 2.9519 0.0862 4.7161 9 6 3.3894 -0.8877 5.6187 10 6 3.4050 -2.0773 4.9704 11 7 2.9898 -1.8905 3.6999 12 1 2.9086 -2.5819 3.0245 13 6 2.0324 -0.7104 -1.2304 14 8 2.5964 -1.7791 -1.1257 15 7 1.8550 -0.1584 -2.4469 16 6 1.2646 1.1771 -2.5663 17 6 2.2526 -0.8937 -3.6502 18 6 1.0935 -1.7250 -4.1366 19 1 0.1547 -1.7072 -3.6032 20 6 1.2319 -2.5085 -5.2627 21 7 0.2203 -3.2337 -5.6875 22 14 2.8560 -2.5400 -6.1849 23 1 3.7177 -3.6163 -5.6333 24 1 2.6026 -2.7981 -7.6252 25 1 3.5390 -1.2305 -6.0294 26 1 -0.3633 -1.0196 0.1279 27 1 -0.3634 0.6207 0.8190 28 1 -0.3633 0.3990 -0.9471 29 1 2.8318 1.1406 4.9166 30 1 3.6695 -0.7207 6.6482 31 1 3.7022 -3.0222 5.4007 32 1 2.0473 1.9300 -2.4734 33 1 0.7802 1.2747 -3.5379 34 1 0.5271 1.3202 -1.7766 35 1 2.5449 -0.1877 -4.4275 36 1 3.0943 -1.5455 -3.4161 37 1 0.3176 -3.7846 -6.4799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729856196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:38 Heat of formation + Delta-G solvation = -85.421382 kcal Electronic energy + Delta-G solvation = -21687.545039 eV Core-core repulsion = 18237.652064 eV Total energy + Delta-G solvation = -3449.892975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42340 -41.52472 -40.39059 -37.65896 -36.78836 -34.86717 -33.30901 -32.05826 -30.61506 -30.11643 -27.74134 -26.11681 -24.95224 -23.42118 -21.73268 -21.16168 -20.48206 -20.10642 -19.16853 -18.36179 -17.91518 -17.34809 -17.17614 -16.43120 -16.31485 -15.79847 -15.35295 -14.87738 -14.81675 -14.66919 -14.38475 -14.19276 -13.78949 -13.72254 -13.66905 -13.46437 -13.26560 -13.21598 -12.94845 -12.53721 -12.40595 -12.04496 -12.02008 -11.94188 -11.76163 -10.85350 -10.74223 -10.05283 -9.54005 -9.35860 -8.36074 -6.41895 0.12976 1.15621 1.33019 1.36206 1.44648 1.48560 1.70630 2.06859 2.15455 2.29411 2.35417 2.98108 3.30632 3.58019 3.76171 3.77377 4.18169 4.26651 4.33889 4.38377 4.50152 4.54309 4.59487 4.73555 4.81383 4.88287 5.03320 5.08538 5.10820 5.25584 5.40534 5.48360 5.67905 5.87537 6.18864 6.42012 6.44907 6.56496 6.59782 7.08977 7.24740 8.80491 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028703 B = 0.003820 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.263107 B = 7328.544855 C = 7782.847022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.084 3.916 3 H 0.125 0.875 4 O -0.346 6.346 5 C 0.533 3.467 6 O -0.523 6.523 7 C -0.086 4.086 8 C -0.096 4.096 9 C -0.225 4.225 10 C 0.056 3.944 11 N -0.526 5.526 12 H 0.430 0.570 13 C 0.503 3.497 14 O -0.575 6.575 15 N -0.596 5.596 16 C 0.058 3.942 17 C 0.223 3.777 18 C -0.540 4.540 19 H 0.034 0.966 20 C 0.014 3.986 21 N -0.943 5.943 22 Si 0.946 3.054 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.237 1.237 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.175 0.825 31 H 0.216 0.784 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 8.164 19.829 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.143 0.857 4 O -0.263 6.263 5 C 0.381 3.619 6 O -0.413 6.413 7 C -0.197 4.197 8 C -0.123 4.123 9 C -0.248 4.248 10 C -0.083 4.083 11 N -0.121 5.121 12 H 0.269 0.731 13 C 0.290 3.710 14 O -0.455 6.455 15 N -0.328 5.328 16 C -0.084 4.084 17 C 0.101 3.899 18 C -0.578 4.578 19 H 0.052 0.948 20 C -0.185 4.185 21 N -0.582 5.582 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.200 1.200 25 H -0.160 1.160 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.172 0.828 30 H 0.192 0.808 31 H 0.233 0.767 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.704 7.787 19.500 21.758 hybrid contribution 0.101 -0.724 -1.233 1.434 sum 5.805 7.063 18.266 20.427 Atomic orbital electron populations 1.22299 0.90243 1.04035 1.05594 1.22500 0.97111 0.97235 0.80569 0.85699 1.86681 1.77482 1.41999 1.20111 1.20291 0.73994 0.84924 0.82717 1.90837 1.50549 1.15691 1.84258 1.19309 1.20453 0.85949 0.93947 1.21662 0.99754 1.00694 0.90225 1.21309 1.10340 0.91476 1.01716 1.22854 1.00229 1.02263 0.82927 1.42145 1.49195 1.07712 1.13074 0.73096 1.20574 0.79657 0.85575 0.85148 1.90641 1.44213 1.23859 1.86795 1.47803 1.60836 1.18927 1.05187 1.22363 0.99576 0.81428 1.05005 1.19455 0.94883 0.92401 0.83148 1.21535 0.98570 1.26616 1.11097 0.94780 1.25817 1.00600 0.94082 0.97985 1.70039 1.33473 1.29281 1.25456 0.85743 0.79198 0.80396 0.77803 1.20250 1.19954 1.16047 0.92077 0.88736 0.87992 0.82772 0.80760 0.76749 0.89934 0.89977 0.88934 0.92432 0.96114 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 9.14 71.98 0.66 -3.96 16 2 C 0.08 2.76 2.17 29.85 0.06 2.82 16 3 H 0.13 3.60 6.74 -2.39 -0.02 3.59 16 4 O -0.35 -11.74 9.44 -51.71 -0.49 -12.22 16 5 C 0.53 16.28 7.90 69.97 0.55 16.83 16 6 O -0.52 -17.00 16.15 19.42 0.31 -16.68 16 7 C -0.09 -2.17 7.10 40.32 0.29 -1.89 16 8 C -0.10 -2.01 10.66 22.59 0.24 -1.77 16 9 C -0.23 -3.30 10.81 22.01 0.24 -3.06 16 10 C 0.06 0.74 11.87 83.57 0.99 1.73 16 11 N -0.53 -10.28 6.07 -184.05 -1.12 -11.40 16 12 H 0.43 7.93 8.96 -92.71 -0.83 7.10 16 13 C 0.50 21.30 7.03 87.66 0.62 21.92 16 14 O -0.58 -29.70 16.08 15.59 0.25 -29.45 16 15 N -0.60 -24.21 2.86 -851.11 -2.43 -26.64 16 16 C 0.06 1.63 9.80 127.77 1.25 2.88 16 17 C 0.22 10.74 4.25 85.63 0.36 11.10 16 18 C -0.54 -31.24 9.94 25.60 0.25 -30.98 16 19 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 20 C 0.01 0.79 5.47 84.66 0.46 1.26 16 21 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 22 Si 0.95 43.80 27.47 68.60 1.88 45.69 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.10 2.66 5.46 -2.39 -0.01 2.64 16 29 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 34 H 0.09 2.17 4.31 -2.39 -0.01 2.16 16 35 H 0.06 2.51 7.13 -2.39 -0.02 2.49 16 36 H 0.02 1.08 6.79 -2.39 -0.02 1.06 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.60 321.32 4.91 -75.69 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.22 Total: 16.67 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 5.98 Total: 16.88 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -3.25 Total: -96.57 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: 0.08 Total: -58.36 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -80.60 4.91 -75.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729856196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.730 kcal (2) G-P(sol) polarization free energy of solvation -80.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds