Wall clock time and date at job start Tue Mar 31 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46808 * 2 1 4 4 N 1.28394 * 119.09716 * 270.27169 * 3 2 1 5 5 C 1.31458 * 122.25432 * 180.29743 * 4 3 2 6 6 C 1.47757 * 119.89347 * 179.70220 * 5 4 3 7 7 O 1.21473 * 119.99754 * 179.72891 * 6 5 4 8 8 O 1.34715 * 120.00437 * 359.73209 * 6 5 4 9 9 C 1.45206 * 117.00191 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47091 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99529 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00192 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99910 * 16 14 12 18 18 H 1.48503 * 109.46827 * 209.99657 * 16 14 12 19 19 H 1.48501 * 109.47006 * 329.99902 * 16 14 12 20 20 C 1.41610 * 120.20092 * 359.43074 * 5 4 3 21 21 C 1.36318 * 118.23892 * 0.27407 * 20 5 4 22 22 C 1.34610 * 119.09880 * 90.00279 * 3 2 1 23 23 O 1.21967 * 120.21830 * 359.97317 * 22 3 2 24 24 H 1.09005 * 109.46798 * 60.00156 * 1 2 3 25 25 H 1.08996 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47436 * 299.99876 * 1 2 3 27 27 H 1.08998 * 109.47674 * 239.99864 * 2 1 3 28 28 H 1.08999 * 109.47386 * 119.99467 * 2 1 3 29 29 H 1.09001 * 109.47157 * 299.99602 * 9 8 6 30 30 H 1.09004 * 109.47122 * 59.99735 * 9 8 6 31 31 H 1.08992 * 109.47056 * 300.00206 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00090 * 10 9 8 33 33 H 1.09001 * 109.47372 * 300.00036 * 11 10 9 34 34 H 1.08996 * 109.47261 * 60.00575 * 11 10 9 35 35 H 0.96996 * 119.99496 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.88134 * 180.29037 * 20 5 4 37 37 H 1.08003 * 121.02491 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2213 1.9717 -1.1219 5 6 2.6639 3.2074 -1.1943 6 6 2.8855 3.8341 -2.5139 7 8 3.2897 4.9775 -2.5831 8 8 2.6393 3.1375 -3.6404 9 6 2.8788 3.8168 -4.9012 10 6 2.5463 2.8741 -6.0596 11 6 2.7982 3.5900 -7.3881 12 6 2.4701 2.6618 -8.5290 13 1 2.1169 1.6614 -8.3269 14 6 2.6199 3.0901 -9.8311 15 7 2.3331 2.2801 -10.8268 16 14 3.2302 4.8206 -10.1808 17 1 4.7122 4.8132 -10.2747 18 1 2.6552 5.2983 -11.4639 19 1 2.8084 5.7257 -9.0817 20 6 2.9234 3.9416 -0.0116 21 6 2.7073 3.3303 1.1876 22 6 2.2365 1.9984 1.1762 23 8 2.0286 1.4118 2.2251 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.2482 4.7037 -4.9617 30 1 3.9266 4.1111 -4.9620 31 1 3.1772 1.9874 -5.9990 32 1 1.4986 2.5794 -5.9990 33 1 2.1669 4.4766 -7.4484 34 1 3.8457 3.8850 -7.4490 35 1 2.4389 2.5812 -11.7427 36 1 3.2828 4.9590 -0.0583 37 1 2.8900 3.8484 2.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732372060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:13 Heat of formation + Delta-G solvation = -63.228752 kcal Electronic energy + Delta-G solvation = -20910.372747 eV Core-core repulsion = 17461.442117 eV Total energy + Delta-G solvation = -3448.930630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.59105 -40.33475 -38.20909 -36.83118 -35.77210 -34.13047 -32.49666 -31.90834 -31.14782 -27.81040 -26.46651 -25.23705 -23.57214 -22.87149 -21.72136 -20.34694 -19.13762 -18.29566 -17.19681 -17.09639 -17.05180 -16.62241 -16.37836 -16.08532 -14.63625 -14.37752 -14.36463 -14.20646 -13.98640 -13.69489 -13.22033 -13.03778 -12.77644 -12.61525 -12.36832 -12.02579 -11.98405 -11.63795 -11.11019 -11.03842 -10.95506 -10.94378 -10.51554 -10.24303 -10.05836 -9.85457 -9.75813 -9.27252 -9.05388 -8.58686 -6.08897 -4.08088 -0.01329 0.61872 1.59710 2.26387 2.47363 3.05390 3.28283 3.36140 3.38897 3.50236 4.13089 4.29960 4.41074 4.48764 4.56889 4.59111 4.81276 5.03087 5.13613 5.24292 5.31601 5.36761 5.39488 5.39706 5.46865 5.56015 5.70290 5.80263 6.18825 6.35418 6.53706 6.74580 7.04347 7.18253 7.29607 7.43776 7.64601 7.72825 8.47679 8.95546 9.52480 11.04295 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.003072 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.420849 B = 9111.575543 C = 9958.438696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.331 5.331 4 N -0.140 5.140 5 C 0.026 3.974 6 C 0.537 3.463 7 O -0.497 6.497 8 O -0.334 6.334 9 C 0.065 3.935 10 C -0.101 4.101 11 C -0.010 4.010 12 C -0.522 4.522 13 H 0.074 0.926 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.029 4.029 21 C -0.192 4.192 22 C 0.480 3.520 23 O -0.521 6.521 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.166 0.834 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 0.066 24.235 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.155 5.155 4 N 0.027 4.973 5 C -0.142 4.142 6 C 0.377 3.623 7 O -0.383 6.383 8 O -0.249 6.249 9 C -0.008 4.008 10 C -0.139 4.139 11 C -0.048 4.048 12 C -0.560 4.560 13 H 0.092 0.908 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.052 4.052 21 C -0.222 4.222 22 C 0.279 3.721 23 O -0.399 6.399 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.184 0.816 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.765 -0.676 24.065 24.087 hybrid contribution 0.581 1.607 0.117 1.713 sum -0.184 0.931 24.182 24.200 Atomic orbital electron populations 1.22131 0.93256 1.04009 1.03300 1.22191 0.96418 0.77011 1.06044 1.47161 1.50604 1.15222 1.02499 1.71340 1.03684 1.10122 1.12120 1.20681 1.09014 0.91088 0.93465 1.19894 0.74733 0.83682 0.83945 1.90886 1.42414 1.17526 1.87435 1.86651 1.77719 1.45560 1.14922 1.23649 1.01729 0.96717 0.78734 1.21570 1.02436 0.98149 0.91743 1.19523 0.96574 0.96695 0.91988 1.21053 1.44978 1.00704 0.89269 0.90775 1.25022 0.94834 0.97351 0.96216 1.69910 1.48961 1.36015 0.99125 0.86783 0.79338 0.85333 0.77878 1.20201 1.21303 1.18939 1.22198 0.91376 1.01612 0.89965 1.22665 1.04982 0.94204 1.00339 1.18169 0.80876 0.89033 0.84056 1.90975 1.52527 1.67020 1.29363 0.91242 0.89684 0.91831 0.87275 0.87185 0.91111 0.91115 0.91392 0.91375 0.96236 0.96665 0.92630 0.81617 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.23 37.16 0.38 -0.79 16 2 C 0.10 0.79 6.27 -4.04 -0.03 0.76 16 3 N -0.33 -3.38 3.22 -63.33 -0.20 -3.59 16 4 N -0.14 -1.59 10.68 33.40 0.36 -1.23 16 5 C 0.03 0.29 6.84 -82.85 -0.57 -0.27 16 6 C 0.54 7.35 7.94 34.62 0.28 7.63 16 7 O -0.50 -7.49 16.17 -19.24 -0.31 -7.81 16 8 O -0.33 -5.09 10.04 -40.53 -0.41 -5.50 16 9 C 0.06 1.05 5.48 37.16 0.20 1.25 16 10 C -0.10 -1.92 5.53 -26.73 -0.15 -2.07 16 11 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 12 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 13 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 14 C 0.07 1.93 5.47 -17.81 -0.10 1.83 16 15 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 16 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 20 C -0.03 -0.25 9.67 -38.99 -0.38 -0.62 16 21 C -0.19 -1.61 10.11 -39.12 -0.40 -2.01 16 22 C 0.48 5.18 7.47 -15.18 -0.11 5.06 16 23 O -0.52 -6.81 16.62 4.95 0.08 -6.72 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.11 0.78 7.36 -51.93 -0.38 0.40 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 34 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.17 1.10 7.72 -52.48 -0.41 0.70 16 37 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -32.93 326.94 -5.71 -38.63 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.94 Total: -4.19 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.31 Total: -4.48 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.93 Total: -31.49 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.64 Total: -20.03 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.93 -5.71 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732372060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.594 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds