Wall clock time and date at job start Tue Mar 31 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46808 * 2 1 4 4 N 1.28394 * 119.09716 * 270.27169 * 3 2 1 5 5 C 1.31458 * 122.25432 * 180.29743 * 4 3 2 6 6 C 1.47757 * 119.89347 * 179.70220 * 5 4 3 7 7 O 1.21473 * 119.99754 * 179.72891 * 6 5 4 8 8 O 1.34715 * 120.00437 * 359.73209 * 6 5 4 9 9 C 1.45206 * 117.00191 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47091 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00275 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99709 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99529 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00192 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47123 * 89.99910 * 16 14 12 18 18 H 1.48503 * 109.46827 * 209.99657 * 16 14 12 19 19 H 1.48501 * 109.47006 * 329.99902 * 16 14 12 20 20 C 1.41610 * 120.20092 * 359.43074 * 5 4 3 21 21 C 1.36318 * 118.23892 * 0.27407 * 20 5 4 22 22 C 1.34610 * 119.09880 * 90.00279 * 3 2 1 23 23 O 1.21967 * 120.21830 * 359.97317 * 22 3 2 24 24 H 1.09005 * 109.46798 * 60.00156 * 1 2 3 25 25 H 1.08996 * 109.46896 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47436 * 299.99876 * 1 2 3 27 27 H 1.08998 * 109.47674 * 239.99864 * 2 1 3 28 28 H 1.08999 * 109.47386 * 119.99467 * 2 1 3 29 29 H 1.09001 * 109.47157 * 299.99602 * 9 8 6 30 30 H 1.09004 * 109.47122 * 59.99735 * 9 8 6 31 31 H 1.08992 * 109.47056 * 300.00206 * 10 9 8 32 32 H 1.09004 * 109.47006 * 60.00090 * 10 9 8 33 33 H 1.09001 * 109.47372 * 300.00036 * 11 10 9 34 34 H 1.08996 * 109.47261 * 60.00575 * 11 10 9 35 35 H 0.96996 * 119.99496 * 180.02562 * 15 14 12 36 36 H 1.08003 * 120.88134 * 180.29037 * 20 5 4 37 37 H 1.08003 * 121.02491 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2213 1.9717 -1.1219 5 6 2.6639 3.2074 -1.1943 6 6 2.8855 3.8341 -2.5139 7 8 3.2897 4.9775 -2.5831 8 8 2.6393 3.1375 -3.6404 9 6 2.8788 3.8168 -4.9012 10 6 2.5463 2.8741 -6.0596 11 6 2.7982 3.5900 -7.3881 12 6 2.4701 2.6618 -8.5290 13 1 2.1169 1.6614 -8.3269 14 6 2.6199 3.0901 -9.8311 15 7 2.3331 2.2801 -10.8268 16 14 3.2302 4.8206 -10.1808 17 1 4.7122 4.8132 -10.2747 18 1 2.6552 5.2983 -11.4639 19 1 2.8084 5.7257 -9.0817 20 6 2.9234 3.9416 -0.0116 21 6 2.7073 3.3303 1.1876 22 6 2.2365 1.9984 1.1762 23 8 2.0286 1.4118 2.2251 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.2482 4.7037 -4.9617 30 1 3.9266 4.1111 -4.9620 31 1 3.1772 1.9874 -5.9990 32 1 1.4986 2.5794 -5.9990 33 1 2.1669 4.4766 -7.4484 34 1 3.8457 3.8850 -7.4490 35 1 2.4389 2.5812 -11.7427 36 1 3.2828 4.9590 -0.0583 37 1 2.8900 3.8484 2.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732372060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:13 Heat of formation + Delta-G solvation = -84.058637 kcal Electronic energy + Delta-G solvation = -20911.275998 eV Core-core repulsion = 17461.442117 eV Total energy + Delta-G solvation = -3449.833882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.39547 -41.45172 -39.09487 -37.98886 -36.53487 -35.92056 -33.88167 -33.18115 -31.97599 -29.47664 -27.38357 -26.06963 -24.94051 -23.79094 -22.78981 -22.03234 -20.10940 -19.14374 -18.93067 -18.10742 -17.97931 -17.81653 -17.49418 -16.96968 -16.27033 -15.74235 -15.27053 -15.06692 -14.79400 -14.76602 -14.56271 -14.34158 -14.05786 -13.73964 -13.56722 -13.19507 -12.85974 -12.83080 -12.58632 -12.30858 -12.18416 -12.02747 -11.75245 -11.67694 -11.63827 -11.37287 -11.32626 -11.03382 -10.75171 -9.86774 -8.28031 -6.33045 -0.78612 -0.22114 0.81492 1.29614 1.39605 1.41027 1.44634 1.52916 2.22980 2.38139 2.68029 3.07524 3.40542 3.49042 3.63918 3.97383 3.97832 4.03948 4.05535 4.21389 4.37214 4.41964 4.44094 4.66400 4.74411 4.78381 4.81093 4.85425 4.92061 4.98799 5.12841 5.22348 5.49748 5.52999 5.64726 6.22429 6.28200 6.44840 6.73729 6.75727 7.31519 8.88657 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.003072 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.420849 B = 9111.575543 C = 9958.438696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.329 5.329 4 N -0.154 5.154 5 C 0.020 3.980 6 C 0.540 3.460 7 O -0.509 6.509 8 O -0.343 6.343 9 C 0.073 3.927 10 C -0.093 4.093 11 C -0.009 4.009 12 C -0.534 4.534 13 H 0.034 0.966 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.951 3.049 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.242 1.242 20 C -0.021 4.021 21 C -0.182 4.182 22 C 0.470 3.530 23 O -0.549 6.549 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.267 0.733 36 H 0.189 0.811 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 1.949 25.763 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.152 5.152 4 N 0.013 4.987 5 C -0.147 4.147 6 C 0.382 3.618 7 O -0.395 6.395 8 O -0.258 6.258 9 C 0.000 4.000 10 C -0.131 4.131 11 C -0.047 4.047 12 C -0.572 4.572 13 H 0.052 0.948 14 C -0.194 4.194 15 N -0.592 5.592 16 Si 0.774 3.226 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.165 1.165 20 C -0.044 4.044 21 C -0.211 4.211 22 C 0.271 3.729 23 O -0.429 6.429 24 H 0.078 0.922 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.207 0.793 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.043 1.206 25.610 25.639 hybrid contribution 0.307 0.878 -0.328 0.986 sum 0.264 2.083 25.282 25.369 Atomic orbital electron populations 1.22097 0.92681 1.05131 1.02186 1.22443 0.96902 0.76155 1.06904 1.47348 1.49922 1.15815 1.02159 1.71302 1.04201 1.10517 1.12695 1.20606 1.09581 0.91494 0.93066 1.20153 0.74086 0.83502 0.84048 1.90877 1.43046 1.18016 1.87601 1.86625 1.78112 1.45885 1.15128 1.23350 1.02419 0.95776 0.78423 1.21319 1.02026 0.98236 0.91511 1.19450 0.97175 0.96047 0.91982 1.21432 1.44326 1.00094 0.91330 0.94777 1.26035 0.95099 1.02288 0.95930 1.70070 1.50814 1.38607 0.99748 0.85649 0.79104 0.79618 0.78248 1.19081 1.21190 1.16519 1.22330 0.91025 1.02304 0.88725 1.22915 1.03750 0.93016 1.01423 1.18592 0.80711 0.89879 0.83743 1.90963 1.54001 1.67833 1.30143 0.92185 0.87513 0.92932 0.86093 0.86630 0.90265 0.90179 0.91930 0.91971 0.95385 0.95485 0.92463 0.79339 0.78313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.23 71.98 0.74 -1.41 16 2 C 0.09 1.37 6.27 86.38 0.54 1.91 16 3 N -0.33 -6.38 3.22 -472.49 -1.52 -7.90 16 4 N -0.15 -3.32 10.68 -48.24 -0.52 -3.83 16 5 C 0.02 0.42 6.84 42.55 0.29 0.71 16 6 C 0.54 13.82 7.94 70.34 0.56 14.38 16 7 O -0.51 -14.18 16.17 19.92 0.32 -13.86 16 8 O -0.34 -9.94 10.04 -56.24 -0.56 -10.51 16 9 C 0.07 2.24 5.48 71.98 0.39 2.63 16 10 C -0.09 -3.47 5.53 30.59 0.17 -3.30 16 11 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 12 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 13 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 14 C 0.00 0.19 5.47 84.66 0.46 0.65 16 15 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 16 Si 0.95 43.13 27.47 68.60 1.88 45.01 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 20 C -0.02 -0.31 9.67 22.65 0.22 -0.09 16 21 C -0.18 -2.61 10.11 22.57 0.23 -2.38 16 22 C 0.47 9.52 7.47 85.01 0.63 10.16 16 23 O -0.55 -13.85 16.62 -5.21 -0.09 -13.93 16 24 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.12 1.56 7.36 -2.39 -0.02 1.54 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.03 1.20 7.20 -2.39 -0.02 1.19 16 34 H 0.03 1.14 7.57 -2.39 -0.02 1.13 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.19 1.88 7.72 -2.91 -0.02 1.86 16 37 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -71.39 326.94 5.44 -65.95 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.02 Total: 5.02 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.60 Total: -6.98 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.74 Total: -70.70 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.33 Total: -38.30 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Total: -71.39 5.44 -65.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732372060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.113 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds