Wall clock time and date at job start Tue Mar 31 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46977 * 2 1 4 4 C 1.34119 * 125.69703 * 125.00148 * 3 2 1 5 5 C 1.38628 * 107.33760 * 179.97438 * 4 3 2 6 6 C 1.46922 * 126.49391 * 179.97438 * 5 4 3 7 7 O 1.21413 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.49283 * 119.99953 * 179.97438 * 6 5 4 9 9 O 1.21273 * 120.00390 * 0.02562 * 8 6 5 10 10 O 1.34557 * 119.99691 * 179.72169 * 8 6 5 11 11 C 1.45202 * 116.99717 * 180.27349 * 10 8 6 12 12 C 1.53001 * 109.47151 * 180.02562 * 11 10 8 13 13 C 1.52990 * 109.47268 * 180.02562 * 12 11 10 14 14 C 1.50709 * 109.47212 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99333 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00027 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00242 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00063 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46989 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47302 * 119.99596 * 18 16 14 21 21 H 1.48491 * 109.47363 * 239.99977 * 18 16 14 22 22 C 1.41570 * 107.01485 * 0.25737 * 5 4 3 23 23 N 1.30346 * 107.98920 * 359.56006 * 22 5 4 24 24 H 1.08995 * 109.47304 * 300.00078 * 1 2 3 25 25 H 1.08998 * 109.47040 * 60.00011 * 1 2 3 26 26 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47027 * 239.99493 * 2 1 3 28 28 H 1.08998 * 109.46595 * 119.99696 * 2 1 3 29 29 H 1.08002 * 126.32992 * 0.02562 * 4 3 2 30 30 H 1.08998 * 109.47630 * 300.00553 * 11 10 8 31 31 H 1.09004 * 109.46770 * 60.00957 * 11 10 8 32 32 H 1.08998 * 109.47123 * 300.00640 * 12 11 10 33 33 H 1.09002 * 109.47078 * 60.00027 * 12 11 10 34 34 H 1.08998 * 109.47401 * 300.00262 * 13 12 11 35 35 H 1.09004 * 109.46882 * 60.00594 * 13 12 11 36 36 H 0.96998 * 120.00734 * 180.02562 * 17 16 14 37 37 H 1.08005 * 126.00637 * 179.73329 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8682 1.9108 0.8922 5 6 3.0711 3.2346 0.5342 6 6 3.9287 4.2056 1.2272 7 8 4.5453 3.8722 2.2185 8 6 4.0418 5.6023 0.7125 9 8 3.4256 5.9357 -0.2774 10 8 4.8229 6.4932 1.3504 11 6 4.8804 7.8345 0.7973 12 6 5.8117 8.6983 1.6501 13 6 5.8719 10.1118 1.0677 14 6 6.7897 10.9625 1.9074 15 1 7.2812 10.5373 2.7699 16 6 7.0018 12.2835 1.5745 17 7 6.4036 12.8011 0.5238 18 14 8.1400 13.3378 2.6148 19 1 8.6859 12.5242 3.7308 20 1 9.2577 13.8375 1.7745 21 1 7.3819 14.4895 3.1660 22 6 2.2902 3.4754 -0.6219 23 7 1.6765 2.3678 -0.9310 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3130 1.4001 1.7335 30 1 5.2597 7.7906 -0.2236 31 1 3.8811 8.2698 0.7953 32 1 5.4328 8.7423 2.6712 33 1 6.8110 8.2629 1.6519 34 1 6.2505 10.0682 0.0465 35 1 4.8725 10.5470 1.0664 36 1 6.5531 13.7304 0.2893 37 1 2.2180 4.4116 -1.1556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758852421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:04 Heat of formation + Delta-G solvation = -52.342952 kcal Electronic energy + Delta-G solvation = -20376.362219 eV Core-core repulsion = 16927.903633 eV Total energy + Delta-G solvation = -3448.458586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.80363 -40.42804 -38.70084 -36.65490 -34.97580 -33.98033 -31.69791 -31.00866 -30.35074 -27.56006 -26.05882 -24.26856 -23.31106 -22.02710 -21.08877 -20.42695 -19.81201 -17.87892 -17.57503 -16.69380 -16.60430 -16.16703 -15.99453 -15.41698 -14.89046 -14.59262 -14.45132 -14.25213 -13.66714 -13.57780 -13.24275 -12.99396 -12.66050 -12.26789 -12.14489 -12.05038 -11.93732 -11.64463 -11.06523 -10.98331 -10.64908 -10.58302 -10.44397 -9.99621 -9.98145 -9.72643 -9.45881 -9.13895 -9.13492 -8.37860 -6.02475 -4.05210 0.45518 1.47096 1.85069 2.18952 2.40765 3.14855 3.31588 3.38991 3.43727 3.91201 4.25222 4.34831 4.36579 4.48302 4.57736 4.66235 4.68652 4.97320 5.07163 5.22902 5.32827 5.33669 5.55020 5.55091 5.57339 5.97855 6.12552 6.34047 6.36436 6.54642 6.72180 6.87964 6.98647 7.19683 7.61431 7.71302 7.72014 7.96092 8.37203 9.01279 9.59140 11.08994 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.060948 B = 0.002382 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.296560 B =11750.996600 C =12115.101800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 N -0.357 5.357 4 C 0.141 3.859 5 C -0.318 4.318 6 C 0.449 3.551 7 O -0.414 6.414 8 C 0.434 3.566 9 O -0.481 6.481 10 O -0.333 6.333 11 C 0.064 3.936 12 C -0.110 4.110 13 C 0.024 3.976 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.114 3.886 23 N -0.300 5.300 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.192 0.808 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.261 0.739 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 -27.401 -0.944 29.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.003 3.997 3 N -0.134 5.134 4 C -0.013 4.013 5 C -0.331 4.331 6 C 0.323 3.677 7 O -0.286 6.286 8 C 0.274 3.726 9 O -0.369 6.369 10 O -0.248 6.248 11 C -0.009 4.009 12 C -0.148 4.148 13 C -0.013 4.013 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.074 4.074 23 N -0.119 5.119 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.209 0.791 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.611 -28.002 -1.630 30.357 hybrid contribution 1.104 1.238 0.877 1.876 sum -10.507 -26.764 -0.753 28.762 Atomic orbital electron populations 1.22065 0.93156 1.03255 1.03985 1.21900 0.96673 0.76605 1.04495 1.48778 1.33560 1.10966 1.20146 1.23228 0.90791 0.93246 0.94014 1.20263 1.12961 0.94861 1.04968 1.20504 0.79320 0.84762 0.83143 1.90626 1.37230 1.78987 1.21780 1.23973 0.77709 0.88490 0.82423 1.90697 1.42039 1.79597 1.24567 1.86667 1.60552 1.23307 1.54285 1.23691 1.02074 0.76363 0.98764 1.21791 0.97484 0.96578 0.98928 1.19064 0.97689 0.88013 0.96556 1.21216 1.27206 0.95346 1.12081 0.92320 1.25032 0.96153 0.98063 0.95290 1.69970 1.43253 1.14071 1.26094 0.86485 0.80573 0.80306 0.80348 1.19650 1.20994 1.20991 1.24782 0.91327 0.97502 0.93812 1.77231 1.24354 0.97141 1.13214 0.91851 0.90749 0.90318 0.88979 0.88073 0.79078 0.91004 0.91002 0.91959 0.91954 0.96163 0.96161 0.92956 0.77380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.09 37.16 0.37 -0.29 16 2 C 0.12 0.49 7.20 -4.04 -0.03 0.46 16 3 N -0.36 -2.88 3.64 -60.68 -0.22 -3.10 16 4 C 0.14 1.16 11.27 -16.41 -0.18 0.98 16 5 C -0.32 -3.57 6.12 -104.97 -0.64 -4.21 16 6 C 0.45 6.04 7.20 -31.47 -0.23 5.81 16 7 O -0.41 -6.18 17.52 -7.86 -0.14 -6.32 16 8 C 0.43 6.73 8.01 35.33 0.28 7.01 16 9 O -0.48 -7.66 14.03 -19.09 -0.27 -7.93 16 10 O -0.33 -5.85 10.08 -45.16 -0.46 -6.30 16 11 C 0.06 1.17 5.47 37.16 0.20 1.37 16 12 C -0.11 -2.31 5.53 -26.74 -0.15 -2.46 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.11 1.30 11.13 -16.91 -0.19 1.11 16 23 N -0.30 -3.27 12.31 30.91 0.38 -2.89 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.12 8.06 -51.93 -0.42 -0.30 16 29 H 0.19 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.21 2.35 6.26 -52.48 -0.33 2.03 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -33.45 333.12 -6.01 -39.46 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -4.94 Total: -5.20 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.11 Total: -3.29 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.90 Total: -32.11 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.86 Total: -20.55 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.45 -6.01 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758852421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.884 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds