Wall clock time and date at job start Tue Mar 31 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46985 * 2 1 4 4 C 1.36942 * 119.99707 * 83.21389 * 3 2 1 5 5 H 1.07995 * 119.99716 * 168.45829 * 4 3 2 6 6 C 1.38809 * 119.99890 * 348.45922 * 4 3 2 7 7 N 1.31622 * 120.00408 * 8.73421 * 6 4 3 8 8 Si 1.86803 * 119.99860 * 188.73585 * 6 4 3 9 9 H 1.48496 * 109.47349 * 90.00021 * 8 6 4 10 10 H 1.48500 * 109.47050 * 209.99884 * 8 6 4 11 11 H 1.48503 * 109.46911 * 329.99895 * 8 6 4 12 12 C 1.46499 * 120.00369 * 263.21682 * 3 2 1 13 13 C 1.53001 * 109.46813 * 264.40267 * 12 3 2 14 14 H 1.09002 * 109.46917 * 306.24615 * 13 12 3 15 15 O 1.42894 * 109.47596 * 66.24980 * 13 12 3 16 16 C 1.50697 * 109.47151 * 186.25042 * 13 12 3 17 17 C 1.38230 * 120.00144 * 279.72509 * 16 13 12 18 18 C 1.38240 * 120.00517 * 179.78535 * 17 16 13 19 19 C 1.38238 * 119.99278 * 0.46423 * 18 17 16 20 20 N 1.48022 * 119.99827 * 179.78941 * 19 18 17 21 21 O 1.21799 * 120.00303 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99889 * 359.97438 * 20 19 18 23 23 C 1.38237 * 120.00304 * 359.77032 * 19 18 17 24 24 C 1.38232 * 119.99817 * 0.02562 * 23 19 18 25 25 H 1.08992 * 109.46929 * 187.32829 * 1 2 3 26 26 H 1.09006 * 109.46657 * 307.32730 * 1 2 3 27 27 H 1.08993 * 109.47151 * 67.32709 * 1 2 3 28 28 H 1.09002 * 109.46779 * 240.00540 * 2 1 3 29 29 H 1.08991 * 109.47220 * 120.00489 * 2 1 3 30 30 H 0.96999 * 119.99879 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47483 * 144.40159 * 12 3 2 32 32 H 1.09002 * 109.47033 * 24.39729 * 12 3 2 33 33 H 0.96702 * 114.00171 * 59.99673 * 15 13 12 34 34 H 1.08003 * 119.99988 * 359.97438 * 17 16 13 35 35 H 1.07994 * 120.00703 * 180.25769 * 18 17 16 36 36 H 1.08002 * 119.99798 * 179.97438 * 23 19 18 37 37 H 1.08000 * 119.99686 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1145 2.0734 1.1777 5 1 2.6431 3.0146 1.2092 6 6 1.5324 1.5653 2.3308 7 7 1.0392 0.3450 2.3365 8 14 1.4489 2.6135 3.8748 9 1 0.1841 3.3916 3.8772 10 1 1.4923 1.7358 5.0719 11 1 2.6040 3.5464 3.9028 12 6 2.4038 2.0220 -1.2598 13 6 3.9149 1.8875 -1.4589 14 1 4.4327 2.2713 -0.5798 15 8 4.2501 0.5111 -1.6461 16 6 4.3338 2.6761 -2.6728 17 6 4.1601 2.1437 -3.9366 18 6 4.5403 2.8689 -5.0504 19 6 5.1030 4.1226 -4.8998 20 7 5.5144 4.8973 -6.0921 21 8 6.0097 6.0021 -5.9595 22 8 5.3576 4.4299 -7.2059 23 6 5.2811 4.6530 -3.6357 24 6 4.8970 3.9295 -2.5222 25 1 -0.3633 -1.0192 0.1311 26 1 -0.3633 0.6232 0.8172 27 1 -0.3633 0.3961 -0.9482 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.6328 -0.0101 3.1424 31 1 2.1341 3.0776 -1.2280 32 1 1.8840 1.5388 -2.0871 33 1 3.8239 0.1032 -2.4123 34 1 3.7246 1.1624 -4.0540 35 1 4.4008 2.4548 -6.0380 36 1 5.7211 5.6323 -3.5181 37 1 5.0366 4.3437 -1.5346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776582871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:36 Heat of formation + Delta-G solvation = 5.559608 kcal Electronic energy + Delta-G solvation = -21670.285722 eV Core-core repulsion = 18224.337979 eV Total energy + Delta-G solvation = -3445.947743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.21143 -39.92101 -37.32626 -36.61023 -35.47399 -32.48652 -31.50165 -31.35191 -29.76610 -27.93952 -25.99711 -24.10148 -23.30278 -22.66051 -21.26640 -20.31733 -19.43303 -18.70823 -17.57329 -17.38555 -16.67492 -15.84254 -15.33909 -15.13417 -14.74042 -14.26881 -13.88267 -13.72077 -13.47429 -13.24844 -12.87528 -12.10173 -11.84045 -11.75643 -11.60512 -11.36934 -11.26669 -11.20747 -11.04621 -10.93875 -10.78100 -10.61940 -10.14553 -10.03222 -9.80492 -9.60259 -9.53039 -9.36355 -8.46304 -6.95413 -5.76390 -3.25323 -0.24642 0.84108 1.28275 1.37164 3.15723 3.29035 3.35034 3.36801 4.24511 4.28542 4.35796 4.48251 4.62210 4.85819 4.88782 5.11672 5.23192 5.37179 5.47045 5.59356 5.65106 5.67810 5.81652 5.98371 6.12607 6.33061 6.40887 6.48104 6.53675 6.90889 7.00925 7.15463 7.50660 7.59384 7.81992 7.87221 7.99560 8.35787 9.12752 9.71349 10.12935 11.13380 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.003824 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.568545 B = 7320.041131 C = 7931.668894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 N -0.586 5.586 4 C -0.249 4.249 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.899 5.899 8 Si 0.909 3.091 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.130 3.870 13 C 0.109 3.891 14 H 0.115 0.885 15 O -0.540 6.540 16 C -0.046 4.046 17 C -0.118 4.118 18 C -0.050 4.050 19 C -0.062 4.062 20 N 0.034 4.966 21 O -0.171 6.171 22 O -0.171 6.171 23 C -0.051 4.051 24 C -0.113 4.113 25 H 0.023 0.977 26 H 0.078 0.922 27 H -0.001 1.001 28 H 0.000 1.000 29 H 0.106 0.894 30 H 0.252 0.748 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.362 0.638 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 3.188 -10.790 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 N -0.305 5.305 4 C -0.378 4.378 5 H 0.092 0.908 6 C -0.199 4.199 7 N -0.545 5.545 8 Si 0.740 3.260 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.000 4.000 13 C 0.046 3.954 14 H 0.133 0.867 15 O -0.344 6.344 16 C -0.048 4.048 17 C -0.137 4.137 18 C -0.069 4.069 19 C -0.146 4.146 20 N 0.551 4.449 21 O -0.385 6.385 22 O -0.385 6.385 23 C -0.070 4.070 24 C -0.132 4.132 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.209 0.791 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.253 2.809 -9.473 11.190 hybrid contribution -0.337 0.759 -0.080 0.834 sum 4.917 3.568 -9.552 11.321 Atomic orbital electron populations 1.22329 0.99464 0.99136 0.98480 1.21103 0.92053 0.83802 0.98839 1.44160 1.73455 1.11656 1.01207 1.19305 1.28924 1.02860 0.86700 0.90834 1.24872 0.99713 0.96884 0.98423 1.70194 1.43338 1.13940 1.27048 0.86170 0.77895 0.79420 0.82559 1.21481 1.21649 1.20643 1.21352 0.90460 0.98018 0.90183 1.22225 1.00263 0.80485 0.92395 0.86701 1.86724 1.72458 1.23395 1.51816 1.21535 0.91192 0.94981 0.97102 1.20946 1.01216 1.00827 0.90728 1.20972 0.93653 0.91021 1.01282 1.21045 1.12601 0.95648 0.85261 1.43653 0.97959 1.00731 1.02589 1.94520 1.44538 1.06262 1.93155 1.94516 1.59295 1.73173 1.11535 1.21029 0.95801 1.00659 0.89544 1.21126 0.98880 0.94302 0.98881 0.95797 0.90335 0.98225 0.98179 0.87597 0.93719 0.92855 0.93325 0.79101 0.83885 0.83235 0.83190 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.31 37.16 0.35 -2.66 16 2 C 0.17 3.77 5.68 -4.04 -0.02 3.75 16 3 N -0.59 -13.10 2.52 -173.24 -0.44 -13.53 16 4 C -0.25 -6.16 9.75 -15.06 -0.15 -6.31 16 5 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 6 C 0.00 -0.05 5.07 -17.43 -0.09 -0.14 16 7 N -0.90 -23.65 7.51 55.49 0.42 -23.23 16 8 Si 0.91 20.47 29.56 -169.99 -5.03 15.44 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.13 2.25 5.26 -4.04 -0.02 2.22 16 13 C 0.11 1.62 3.41 -27.88 -0.10 1.53 16 14 H 0.12 1.92 8.00 -51.93 -0.42 1.50 16 15 O -0.54 -8.38 12.97 -35.23 -0.46 -8.84 16 16 C -0.05 -0.55 4.97 -104.63 -0.52 -1.07 16 17 C -0.12 -1.23 9.32 -39.58 -0.37 -1.60 16 18 C -0.05 -0.54 9.56 -39.58 -0.38 -0.91 16 19 C -0.06 -0.76 6.85 -79.94 -0.55 -1.30 16 20 N 0.03 0.48 4.45 33.96 0.15 0.63 16 21 O -0.17 -2.48 18.45 -29.46 -0.54 -3.03 16 22 O -0.17 -2.47 18.45 -29.46 -0.54 -3.02 16 23 C -0.05 -0.56 9.56 -39.58 -0.38 -0.94 16 24 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.99 6.13 -51.93 -0.32 1.67 16 27 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.00 0.00 7.85 -51.93 -0.41 -0.41 16 29 H 0.11 2.76 5.85 -51.93 -0.30 2.46 16 30 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.05 0.77 8.03 -51.93 -0.42 0.35 16 33 H 0.36 4.23 7.50 45.56 0.34 4.57 16 34 H 0.14 1.16 6.78 -52.48 -0.36 0.80 16 35 H 0.15 1.36 7.61 -52.49 -0.40 0.96 16 36 H 0.15 1.43 7.61 -52.49 -0.40 1.03 16 37 H 0.15 1.43 8.04 -52.49 -0.42 1.00 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -28.32 317.55 -8.17 -36.49 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.91 Total: 3.38 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.60 Total: -9.08 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.13 Total: -36.14 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.54 Total: -14.88 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.32 -8.17 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776582871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.046 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds