Wall clock time and date at job start Tue Mar 31 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46985 * 2 1 4 4 C 1.36942 * 119.99707 * 83.21389 * 3 2 1 5 5 H 1.07995 * 119.99716 * 168.45829 * 4 3 2 6 6 C 1.38809 * 119.99890 * 348.45922 * 4 3 2 7 7 N 1.31622 * 120.00408 * 8.73421 * 6 4 3 8 8 Si 1.86803 * 119.99860 * 188.73585 * 6 4 3 9 9 H 1.48496 * 109.47349 * 90.00021 * 8 6 4 10 10 H 1.48500 * 109.47050 * 209.99884 * 8 6 4 11 11 H 1.48503 * 109.46911 * 329.99895 * 8 6 4 12 12 C 1.46499 * 120.00369 * 263.21682 * 3 2 1 13 13 C 1.53001 * 109.46813 * 264.40267 * 12 3 2 14 14 H 1.09002 * 109.46917 * 306.24615 * 13 12 3 15 15 O 1.42894 * 109.47596 * 66.24980 * 13 12 3 16 16 C 1.50697 * 109.47151 * 186.25042 * 13 12 3 17 17 C 1.38230 * 120.00144 * 279.72509 * 16 13 12 18 18 C 1.38240 * 120.00517 * 179.78535 * 17 16 13 19 19 C 1.38238 * 119.99278 * 0.46423 * 18 17 16 20 20 N 1.48022 * 119.99827 * 179.78941 * 19 18 17 21 21 O 1.21799 * 120.00303 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99889 * 359.97438 * 20 19 18 23 23 C 1.38237 * 120.00304 * 359.77032 * 19 18 17 24 24 C 1.38232 * 119.99817 * 0.02562 * 23 19 18 25 25 H 1.08992 * 109.46929 * 187.32829 * 1 2 3 26 26 H 1.09006 * 109.46657 * 307.32730 * 1 2 3 27 27 H 1.08993 * 109.47151 * 67.32709 * 1 2 3 28 28 H 1.09002 * 109.46779 * 240.00540 * 2 1 3 29 29 H 1.08991 * 109.47220 * 120.00489 * 2 1 3 30 30 H 0.96999 * 119.99879 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47483 * 144.40159 * 12 3 2 32 32 H 1.09002 * 109.47033 * 24.39729 * 12 3 2 33 33 H 0.96702 * 114.00171 * 59.99673 * 15 13 12 34 34 H 1.08003 * 119.99988 * 359.97438 * 17 16 13 35 35 H 1.07994 * 120.00703 * 180.25769 * 18 17 16 36 36 H 1.08002 * 119.99798 * 179.97438 * 23 19 18 37 37 H 1.08000 * 119.99686 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1145 2.0734 1.1777 5 1 2.6431 3.0146 1.2092 6 6 1.5324 1.5653 2.3308 7 7 1.0392 0.3450 2.3365 8 14 1.4489 2.6135 3.8748 9 1 0.1841 3.3916 3.8772 10 1 1.4923 1.7358 5.0719 11 1 2.6040 3.5464 3.9028 12 6 2.4038 2.0220 -1.2598 13 6 3.9149 1.8875 -1.4589 14 1 4.4327 2.2713 -0.5798 15 8 4.2501 0.5111 -1.6461 16 6 4.3338 2.6761 -2.6728 17 6 4.1601 2.1437 -3.9366 18 6 4.5403 2.8689 -5.0504 19 6 5.1030 4.1226 -4.8998 20 7 5.5144 4.8973 -6.0921 21 8 6.0097 6.0021 -5.9595 22 8 5.3576 4.4299 -7.2059 23 6 5.2811 4.6530 -3.6357 24 6 4.8970 3.9295 -2.5222 25 1 -0.3633 -1.0192 0.1311 26 1 -0.3633 0.6232 0.8172 27 1 -0.3633 0.3961 -0.9482 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.6328 -0.0101 3.1424 31 1 2.1341 3.0776 -1.2280 32 1 1.8840 1.5388 -2.0871 33 1 3.8239 0.1032 -2.4123 34 1 3.7246 1.1624 -4.0540 35 1 4.4008 2.4548 -6.0380 36 1 5.7211 5.6323 -3.5181 37 1 5.0366 4.3437 -1.5346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776582871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:36 Heat of formation + Delta-G solvation = -10.400053 kcal Electronic energy + Delta-G solvation = -21670.977784 eV Core-core repulsion = 18224.337979 eV Total energy + Delta-G solvation = -3446.639806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.26365 -40.92101 -38.62515 -37.69601 -37.00526 -33.63815 -32.96774 -32.37804 -31.39828 -29.31296 -27.31600 -25.61835 -24.28800 -23.94994 -22.46996 -21.92425 -20.40287 -19.77000 -18.84582 -18.62543 -18.11738 -16.98971 -16.78761 -16.33798 -15.78857 -15.53498 -15.39748 -14.87826 -14.64781 -14.43546 -14.13352 -13.70876 -13.42092 -13.11350 -12.77487 -12.75022 -12.60246 -12.42052 -12.39504 -12.32342 -12.32143 -12.17041 -11.79117 -11.60168 -11.51286 -11.14989 -10.47707 -10.37693 -10.25636 -8.69256 -7.62854 -5.13634 -1.25976 -0.01110 0.26797 0.36747 1.49566 1.51917 1.57926 2.25213 2.54009 3.29460 3.38369 3.39481 3.51646 3.57018 3.85050 3.97286 3.99620 4.27697 4.30828 4.42318 4.67784 4.74741 4.76376 4.81416 4.89340 4.99640 5.14692 5.16391 5.27400 5.34818 5.39353 5.47750 5.62247 5.99354 6.18538 6.47770 6.52177 6.86981 7.27912 7.98028 8.34382 9.25281 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.003824 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.568545 B = 7320.041131 C = 7931.668894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.173 3.827 3 N -0.606 5.606 4 C -0.251 4.251 5 H 0.077 0.923 6 C -0.054 4.054 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.292 1.292 10 H -0.301 1.301 11 H -0.272 1.272 12 C 0.128 3.872 13 C 0.127 3.873 14 H 0.094 0.906 15 O -0.558 6.558 16 C -0.049 4.049 17 C -0.108 4.108 18 C -0.047 4.047 19 C -0.070 4.070 20 N 0.033 4.967 21 O -0.186 6.186 22 O -0.178 6.178 23 C -0.050 4.050 24 C -0.111 4.111 25 H 0.028 0.972 26 H 0.044 0.956 27 H 0.014 0.986 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.241 0.759 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.380 0.620 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 3.607 -12.579 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 N -0.327 5.327 4 C -0.381 4.381 5 H 0.095 0.905 6 C -0.247 4.247 7 N -0.570 5.570 8 Si 0.790 3.210 9 H -0.220 1.220 10 H -0.228 1.228 11 H -0.197 1.197 12 C 0.001 3.999 13 C 0.065 3.935 14 H 0.111 0.889 15 O -0.364 6.364 16 C -0.051 4.051 17 C -0.126 4.126 18 C -0.066 4.066 19 C -0.153 4.153 20 N 0.547 4.453 21 O -0.398 6.398 22 O -0.392 6.392 23 C -0.069 4.069 24 C -0.130 4.130 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.911 3.277 -11.329 13.192 hybrid contribution -0.423 0.673 0.264 0.837 sum 5.489 3.950 -11.065 12.968 Atomic orbital electron populations 1.22163 0.99472 0.98776 0.97798 1.20847 0.92020 0.84231 0.98112 1.44235 1.74788 1.11572 1.02103 1.19569 1.27883 1.02898 0.87715 0.90490 1.25452 1.00729 0.97841 1.00727 1.70401 1.44931 1.14955 1.26746 0.85364 0.77674 0.78082 0.79869 1.21992 1.22792 1.19725 1.21523 0.92006 0.97758 0.88662 1.21700 0.97960 0.80789 0.93037 0.88856 1.86691 1.72879 1.23701 1.53171 1.21306 0.92256 0.94953 0.96576 1.21213 1.00052 1.01699 0.89663 1.21219 0.92712 0.90300 1.02327 1.21317 1.13012 0.96150 0.84841 1.43918 0.97640 1.00719 1.02997 1.94518 1.45182 1.06837 1.93282 1.94506 1.59339 1.73110 1.12217 1.21184 0.95438 1.01262 0.89031 1.21284 0.98221 0.93933 0.99544 0.95308 0.93682 0.96659 0.95778 0.91313 0.94880 0.92878 0.91430 0.77040 0.81134 0.81387 0.81887 0.82182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 9.31 71.98 0.67 -4.75 16 2 C 0.17 7.74 5.68 86.38 0.49 8.23 16 3 N -0.61 -26.61 2.52 -702.00 -1.77 -28.38 16 4 C -0.25 -12.41 9.75 84.03 0.82 -11.59 16 5 H 0.08 3.64 7.84 -2.91 -0.02 3.62 16 6 C -0.05 -2.78 5.07 84.86 0.43 -2.35 16 7 N -0.92 -49.90 7.51 21.65 0.16 -49.74 16 8 Si 0.96 42.80 29.56 68.60 2.03 44.83 16 9 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 C 0.13 4.15 5.26 86.38 0.45 4.61 16 13 C 0.13 3.51 3.41 29.85 0.10 3.61 16 14 H 0.09 3.00 8.00 -2.39 -0.02 2.98 16 15 O -0.56 -15.87 12.97 -148.98 -1.93 -17.80 16 16 C -0.05 -1.02 4.97 -19.87 -0.10 -1.12 16 17 C -0.11 -1.81 9.32 22.27 0.21 -1.60 16 18 C -0.05 -0.83 9.56 22.27 0.21 -0.61 16 19 C -0.07 -1.51 6.85 36.37 0.25 -1.26 16 20 N 0.03 0.86 4.45 -46.46 -0.21 0.65 16 21 O -0.19 -5.14 18.45 18.89 0.35 -4.79 16 22 O -0.18 -4.77 18.45 18.88 0.35 -4.42 16 23 C -0.05 -0.97 9.56 22.27 0.21 -0.76 16 24 C -0.11 -2.16 9.67 22.27 0.22 -1.94 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 2.30 6.13 -2.38 -0.01 2.29 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 29 H 0.07 3.64 5.85 -2.39 -0.01 3.63 16 30 H 0.24 12.99 8.31 -92.71 -0.77 12.21 16 31 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 32 H 0.07 1.92 8.03 -2.39 -0.02 1.90 16 33 H 0.38 7.49 7.50 -74.06 -0.56 6.94 16 34 H 0.17 1.91 6.78 -2.91 -0.02 1.89 16 35 H 0.17 2.38 7.61 -2.91 -0.02 2.36 16 36 H 0.16 2.71 7.61 -2.91 -0.02 2.69 16 37 H 0.16 2.70 8.04 -2.91 -0.02 2.68 16 Total: -1.00 -61.48 317.55 3.49 -58.00 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.54 Total: 11.20 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 3.97 Total: -9.55 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.81 Total: -77.47 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.24 Total: -27.01 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -61.48 3.49 -58.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776582871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.598 kcal (2) G-P(sol) polarization free energy of solvation -61.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds