Wall clock time and date at job start Tue Mar 31 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47086 * 2 1 4 4 C 1.36941 * 119.99594 * 270.88402 * 3 2 1 5 5 H 1.07997 * 119.99839 * 326.01376 * 4 3 2 6 6 C 1.38809 * 119.99791 * 146.02213 * 4 3 2 7 7 N 1.31622 * 119.99954 * 336.65361 * 6 4 3 8 8 Si 1.86801 * 120.00087 * 156.65931 * 6 4 3 9 9 H 1.48495 * 109.47137 * 89.99746 * 8 6 4 10 10 H 1.48500 * 109.47021 * 209.99787 * 8 6 4 11 11 H 1.48496 * 109.46889 * 329.99620 * 8 6 4 12 12 C 1.46494 * 120.00194 * 90.88449 * 3 2 1 13 13 C 1.53002 * 109.47267 * 90.00124 * 12 3 2 14 14 H 1.08998 * 109.47285 * 59.99451 * 13 12 3 15 15 O 1.42903 * 109.46731 * 299.99969 * 13 12 3 16 16 C 1.50698 * 109.47466 * 180.02562 * 13 12 3 17 17 C 1.38230 * 119.99813 * 265.00110 * 16 13 12 18 18 C 1.38236 * 119.99986 * 179.97438 * 17 16 13 19 19 C 1.38239 * 120.00144 * 359.97438 * 18 17 16 20 20 N 1.48012 * 119.99891 * 180.02562 * 19 18 17 21 21 O 1.21797 * 120.00403 * 359.97438 * 20 19 18 22 22 O 1.21806 * 119.99954 * 179.97438 * 20 19 18 23 23 C 1.38236 * 119.99851 * 0.02562 * 19 18 17 24 24 C 1.38236 * 120.00005 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47517 * 300.00150 * 1 2 3 26 26 H 1.09004 * 109.46688 * 60.00618 * 1 2 3 27 27 H 1.09001 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47144 * 239.99457 * 2 1 3 29 29 H 1.09004 * 109.46688 * 119.99382 * 2 1 3 30 30 H 0.96998 * 120.00218 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47457 * 330.00210 * 12 3 2 32 32 H 1.08999 * 109.47159 * 210.00018 * 12 3 2 33 33 H 0.96703 * 114.00293 * 299.99733 * 15 13 12 34 34 H 1.07999 * 120.00123 * 0.24897 * 17 16 13 35 35 H 1.08001 * 120.00296 * 179.97438 * 18 17 16 36 36 H 1.07995 * 119.99744 * 179.97438 * 23 19 18 37 37 H 1.07993 * 120.00364 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2293 2.0328 -1.1859 5 1 2.5758 1.4842 -2.0492 6 6 1.9978 3.3983 -1.2781 7 7 1.1734 3.9845 -0.4360 8 14 2.8563 4.4041 -2.5976 9 1 2.0184 4.4308 -3.8232 10 1 3.0614 5.7909 -2.1078 11 1 4.1717 3.7901 -2.9105 12 6 2.2809 2.0653 1.2685 13 6 3.7322 1.8227 1.6879 14 1 4.4019 2.2107 0.9203 15 8 3.9535 0.4201 1.8484 16 6 4.0023 2.5259 2.9931 17 6 4.5599 3.7908 2.9942 18 6 4.8072 4.4360 4.1915 19 6 4.4962 3.8167 5.3876 20 7 4.7604 4.5079 6.6695 21 8 5.2522 5.6221 6.6705 22 8 4.4860 3.9623 7.7234 23 6 3.9385 2.5518 5.3865 24 6 3.6913 1.9065 4.1892 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.0114 4.9387 -0.5007 31 1 1.6113 1.6773 2.0360 32 1 2.1121 3.1352 1.1461 33 1 3.3904 0.0070 2.5172 34 1 4.7984 4.2766 2.0597 35 1 5.2432 5.4241 4.1924 36 1 3.6960 2.0678 6.3209 37 1 3.2560 0.9182 4.1883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776582886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:39 Heat of formation + Delta-G solvation = -11.331747 kcal Electronic energy + Delta-G solvation = -21917.894996 eV Core-core repulsion = 18471.214789 eV Total energy + Delta-G solvation = -3446.680207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.10996 -39.78490 -37.24533 -36.51240 -35.23254 -32.32183 -31.94583 -31.35842 -29.69897 -27.89280 -25.98961 -24.16591 -23.18480 -22.76776 -21.19580 -20.26977 -19.31388 -18.61385 -17.48296 -17.43692 -16.50089 -15.78543 -15.20555 -14.93528 -14.53682 -14.15607 -14.00360 -13.82599 -13.42042 -13.30582 -12.91189 -12.39929 -12.09398 -11.62930 -11.49360 -11.34517 -11.24018 -11.16491 -11.11400 -10.89612 -10.83428 -10.57726 -10.39470 -10.22212 -9.94437 -9.70786 -9.38981 -9.20837 -8.69717 -6.79496 -5.99297 -3.49979 -0.11362 0.98399 1.41316 1.48257 3.22252 3.30898 3.32333 3.35023 4.30542 4.37795 4.48319 4.58467 4.71670 4.99562 5.01561 5.13559 5.25183 5.43948 5.57492 5.73731 5.81799 5.87679 5.97234 6.01874 6.21500 6.25411 6.35122 6.41628 6.54092 6.57227 6.74946 6.86814 7.12157 7.29176 7.64717 7.69909 7.94413 8.28722 8.96625 9.60362 10.16382 11.00100 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.004904 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.413885 B = 5707.757595 C = 6650.877708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 N -0.571 5.571 4 C -0.256 4.256 5 H 0.065 0.935 6 C 0.008 3.992 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.284 1.284 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.122 3.878 13 C 0.111 3.889 14 H 0.114 0.886 15 O -0.548 6.548 16 C -0.039 4.039 17 C -0.111 4.111 18 C -0.050 4.050 19 C -0.063 4.063 20 N 0.036 4.964 21 O -0.172 6.172 22 O -0.173 6.173 23 C -0.051 4.051 24 C -0.120 4.120 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.257 0.743 31 H 0.031 0.969 32 H 0.111 0.889 33 H 0.360 0.640 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -3.401 8.091 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.289 5.289 4 C -0.386 4.386 5 H 0.083 0.917 6 C -0.193 4.193 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.211 1.211 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.006 4.006 13 C 0.049 3.951 14 H 0.132 0.868 15 O -0.352 6.352 16 C -0.041 4.041 17 C -0.129 4.129 18 C -0.070 4.070 19 C -0.147 4.147 20 N 0.552 4.448 21 O -0.386 6.386 22 O -0.387 6.387 23 C -0.070 4.070 24 C -0.139 4.139 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.129 0.871 33 H 0.207 0.793 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.488 -3.469 6.979 8.993 hybrid contribution -0.050 0.868 0.177 0.887 sum 4.438 -2.601 7.156 8.813 Atomic orbital electron populations 1.22303 0.99767 0.98507 1.01861 1.20902 0.91546 0.86924 0.98710 1.43710 1.73242 1.10086 1.01835 1.19146 1.38162 0.91188 0.90065 0.91723 1.25099 0.97365 0.98565 0.98228 1.69964 1.33004 1.10666 1.39116 0.86433 0.80120 0.79495 0.81678 1.21071 1.21343 1.20182 1.21619 0.88512 1.03284 0.87219 1.22196 1.02928 0.79833 0.90122 0.86804 1.86676 1.64707 1.21410 1.62434 1.21524 0.90349 0.94569 0.97646 1.21126 0.99262 0.94786 0.97775 1.21023 0.95610 1.00449 0.89871 1.21024 1.13847 0.96524 0.83275 1.43650 0.97674 1.00528 1.02961 1.94516 1.44492 1.05268 1.94293 1.94506 1.55656 1.68296 1.20221 1.20938 0.94134 0.91492 1.00434 1.20908 1.01499 1.01006 0.90446 0.93956 0.92678 0.94909 0.93912 0.94335 0.93313 0.95084 0.87150 0.79346 0.83386 0.83245 0.83334 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.24 37.16 0.38 -2.67 16 2 C 0.14 2.79 6.12 -4.04 -0.02 2.77 16 3 N -0.57 -12.65 2.37 -173.24 -0.41 -13.07 16 4 C -0.26 -6.39 9.48 -15.06 -0.14 -6.53 16 5 H 0.07 1.64 7.93 -52.49 -0.42 1.22 16 6 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 7 N -0.89 -23.23 11.34 55.49 0.63 -22.60 16 8 Si 0.89 19.89 29.61 -169.99 -5.03 14.86 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.12 2.42 4.97 -4.04 -0.02 2.40 16 13 C 0.11 1.84 3.48 -27.88 -0.10 1.74 16 14 H 0.11 2.10 8.05 -51.93 -0.42 1.68 16 15 O -0.55 -8.56 11.87 -35.23 -0.42 -8.98 16 16 C -0.04 -0.54 5.00 -104.62 -0.52 -1.07 16 17 C -0.11 -1.49 9.68 -39.58 -0.38 -1.88 16 18 C -0.05 -0.66 9.56 -39.58 -0.38 -1.03 16 19 C -0.06 -0.87 6.85 -79.95 -0.55 -1.42 16 20 N 0.04 0.54 4.45 33.96 0.15 0.69 16 21 O -0.17 -2.72 18.45 -29.46 -0.54 -3.26 16 22 O -0.17 -2.69 18.45 -29.46 -0.54 -3.23 16 23 C -0.05 -0.62 9.56 -39.58 -0.38 -1.00 16 24 C -0.12 -1.44 9.33 -39.58 -0.37 -1.81 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.04 0.65 6.90 -51.93 -0.36 0.29 16 30 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.11 2.55 5.33 -51.93 -0.28 2.27 16 33 H 0.36 4.30 7.13 45.56 0.33 4.62 16 34 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 36 H 0.15 1.53 7.61 -52.49 -0.40 1.13 16 37 H 0.14 1.33 6.61 -52.49 -0.35 0.98 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -28.06 321.17 -7.85 -35.91 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.95 Total: 5.23 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.57 Total: -10.39 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.37 Total: -34.97 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -1.51 Total: -15.47 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.06 -7.85 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776582886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.578 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds