Wall clock time and date at job start Tue Mar 31 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47086 * 2 1 4 4 C 1.36941 * 119.99594 * 270.88402 * 3 2 1 5 5 H 1.07997 * 119.99839 * 326.01376 * 4 3 2 6 6 C 1.38809 * 119.99791 * 146.02213 * 4 3 2 7 7 N 1.31622 * 119.99954 * 336.65361 * 6 4 3 8 8 Si 1.86801 * 120.00087 * 156.65931 * 6 4 3 9 9 H 1.48495 * 109.47137 * 89.99746 * 8 6 4 10 10 H 1.48500 * 109.47021 * 209.99787 * 8 6 4 11 11 H 1.48496 * 109.46889 * 329.99620 * 8 6 4 12 12 C 1.46494 * 120.00194 * 90.88449 * 3 2 1 13 13 C 1.53002 * 109.47267 * 90.00124 * 12 3 2 14 14 H 1.08998 * 109.47285 * 59.99451 * 13 12 3 15 15 O 1.42903 * 109.46731 * 299.99969 * 13 12 3 16 16 C 1.50698 * 109.47466 * 180.02562 * 13 12 3 17 17 C 1.38230 * 119.99813 * 265.00110 * 16 13 12 18 18 C 1.38236 * 119.99986 * 179.97438 * 17 16 13 19 19 C 1.38239 * 120.00144 * 359.97438 * 18 17 16 20 20 N 1.48012 * 119.99891 * 180.02562 * 19 18 17 21 21 O 1.21797 * 120.00403 * 359.97438 * 20 19 18 22 22 O 1.21806 * 119.99954 * 179.97438 * 20 19 18 23 23 C 1.38236 * 119.99851 * 0.02562 * 19 18 17 24 24 C 1.38236 * 120.00005 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47517 * 300.00150 * 1 2 3 26 26 H 1.09004 * 109.46688 * 60.00618 * 1 2 3 27 27 H 1.09001 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47144 * 239.99457 * 2 1 3 29 29 H 1.09004 * 109.46688 * 119.99382 * 2 1 3 30 30 H 0.96998 * 120.00218 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47457 * 330.00210 * 12 3 2 32 32 H 1.08999 * 109.47159 * 210.00018 * 12 3 2 33 33 H 0.96703 * 114.00293 * 299.99733 * 15 13 12 34 34 H 1.07999 * 120.00123 * 0.24897 * 17 16 13 35 35 H 1.08001 * 120.00296 * 179.97438 * 18 17 16 36 36 H 1.07995 * 119.99744 * 179.97438 * 23 19 18 37 37 H 1.07993 * 120.00364 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2293 2.0328 -1.1859 5 1 2.5758 1.4842 -2.0492 6 6 1.9978 3.3983 -1.2781 7 7 1.1734 3.9845 -0.4360 8 14 2.8563 4.4041 -2.5976 9 1 2.0184 4.4308 -3.8232 10 1 3.0614 5.7909 -2.1078 11 1 4.1717 3.7901 -2.9105 12 6 2.2809 2.0653 1.2685 13 6 3.7322 1.8227 1.6879 14 1 4.4019 2.2107 0.9203 15 8 3.9535 0.4201 1.8484 16 6 4.0023 2.5259 2.9931 17 6 4.5599 3.7908 2.9942 18 6 4.8072 4.4360 4.1915 19 6 4.4962 3.8167 5.3876 20 7 4.7604 4.5079 6.6695 21 8 5.2522 5.6221 6.6705 22 8 4.4860 3.9623 7.7234 23 6 3.9385 2.5518 5.3865 24 6 3.6913 1.9065 4.1892 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.0114 4.9387 -0.5007 31 1 1.6113 1.6773 2.0360 32 1 2.1121 3.1352 1.1461 33 1 3.3904 0.0070 2.5172 34 1 4.7984 4.2766 2.0597 35 1 5.2432 5.4241 4.1924 36 1 3.6960 2.0678 6.3209 37 1 3.2560 0.9182 4.1883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776582886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:39 Heat of formation + Delta-G solvation = -26.805235 kcal Electronic energy + Delta-G solvation = -21918.565977 eV Core-core repulsion = 18471.214789 eV Total energy + Delta-G solvation = -3447.351188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27648 -40.91473 -38.60771 -37.70537 -36.74232 -33.77798 -33.42885 -32.38032 -31.19460 -29.36158 -27.39369 -25.74640 -24.31872 -24.03842 -22.45212 -21.84605 -20.41209 -19.78861 -18.99574 -18.64247 -17.91063 -17.07863 -16.67427 -16.23237 -15.83297 -15.63052 -15.58023 -14.96825 -14.68409 -14.41503 -14.29380 -13.87873 -13.56107 -13.14441 -12.86998 -12.77957 -12.57779 -12.47416 -12.36698 -12.32949 -12.32905 -12.18877 -12.01474 -11.85133 -11.52690 -11.08063 -10.57511 -10.38629 -10.37129 -8.57627 -7.84187 -5.39985 -1.25420 -0.01841 0.27248 0.35445 1.43754 1.49533 1.56975 2.25054 2.50670 3.17703 3.36412 3.38296 3.50518 3.54756 3.87043 3.98602 4.02184 4.26538 4.38154 4.47319 4.51350 4.66607 4.73379 4.78346 4.84857 4.91411 5.04325 5.11563 5.14052 5.32865 5.37921 5.47958 5.56051 5.63262 5.76656 6.43946 6.48447 6.86747 7.15760 7.86350 8.35627 9.10311 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.004904 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.413885 B = 5707.757595 C = 6650.877708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 N -0.589 5.589 4 C -0.263 4.263 5 H 0.053 0.947 6 C -0.031 4.031 7 N -0.912 5.912 8 Si 0.945 3.055 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.273 1.273 12 C 0.125 3.875 13 C 0.132 3.868 14 H 0.089 0.911 15 O -0.554 6.554 16 C -0.048 4.048 17 C -0.116 4.116 18 C -0.051 4.051 19 C -0.071 4.071 20 N 0.035 4.965 21 O -0.192 6.192 22 O -0.171 6.171 23 C -0.044 4.044 24 C -0.108 4.108 25 H 0.035 0.965 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.252 0.748 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.379 0.621 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -4.739 9.420 11.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 N -0.309 5.309 4 C -0.394 4.394 5 H 0.071 0.929 6 C -0.229 4.229 7 N -0.556 5.556 8 Si 0.773 3.227 9 H -0.216 1.216 10 H -0.215 1.215 11 H -0.198 1.198 12 C -0.002 4.002 13 C 0.070 3.930 14 H 0.107 0.893 15 O -0.361 6.361 16 C -0.050 4.050 17 C -0.135 4.135 18 C -0.070 4.070 19 C -0.155 4.155 20 N 0.549 4.451 21 O -0.402 6.402 22 O -0.387 6.387 23 C -0.063 4.063 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.228 0.772 34 H 0.167 0.833 35 H 0.178 0.822 36 H 0.190 0.810 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.894 -4.797 8.329 10.786 hybrid contribution -0.154 1.184 -0.121 1.200 sum 4.740 -3.613 8.208 10.144 Atomic orbital electron populations 1.22182 0.99287 1.00058 0.99853 1.21028 0.91884 0.85727 0.99759 1.43904 1.74298 1.10979 1.01670 1.19255 1.37551 0.91565 0.90996 0.92915 1.25579 0.98079 0.99284 0.99922 1.70078 1.34529 1.10335 1.40705 0.85639 0.79228 0.78215 0.79581 1.21609 1.21488 1.19800 1.21489 0.90824 1.01200 0.86679 1.21568 0.99900 0.80666 0.90826 0.89303 1.86642 1.65255 1.20688 1.63472 1.21361 0.91585 0.94693 0.97318 1.21205 0.99355 0.94851 0.98109 1.21123 0.95409 1.00979 0.89473 1.21270 1.14315 0.97208 0.82662 1.43857 0.97390 1.00470 1.03368 1.94520 1.45381 1.05807 1.94479 1.94490 1.55299 1.68125 1.20748 1.21236 0.92909 0.90686 1.01499 1.21210 1.00173 1.02009 0.89253 0.94619 0.95899 0.91525 0.94583 0.91430 0.93888 0.94041 0.90311 0.77167 0.83288 0.82156 0.80966 0.80812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 10.24 71.98 0.74 -4.77 16 2 C 0.14 5.23 6.12 86.38 0.53 5.76 16 3 N -0.59 -25.97 2.37 -702.02 -1.67 -27.63 16 4 C -0.26 -13.32 9.48 84.03 0.80 -12.52 16 5 H 0.05 2.73 7.93 -2.91 -0.02 2.71 16 6 C -0.03 -1.59 4.94 84.86 0.42 -1.17 16 7 N -0.91 -48.91 11.34 21.65 0.25 -48.66 16 8 Si 0.94 41.62 29.61 68.60 2.03 43.66 16 9 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.13 4.91 4.97 86.38 0.43 5.33 16 13 C 0.13 4.21 3.48 29.85 0.10 4.32 16 14 H 0.09 3.29 8.05 -2.39 -0.02 3.27 16 15 O -0.55 -15.81 11.87 -148.98 -1.77 -17.58 16 16 C -0.05 -1.25 5.00 -19.87 -0.10 -1.35 16 17 C -0.12 -3.02 9.68 22.27 0.22 -2.81 16 18 C -0.05 -1.25 9.56 22.27 0.21 -1.04 16 19 C -0.07 -1.81 6.85 36.38 0.25 -1.56 16 20 N 0.03 1.00 4.45 -46.47 -0.21 0.79 16 21 O -0.19 -5.88 18.45 18.89 0.35 -5.53 16 22 O -0.17 -4.94 18.45 18.88 0.35 -4.59 16 23 C -0.04 -0.93 9.56 22.27 0.21 -0.72 16 24 C -0.11 -2.21 9.33 22.27 0.21 -2.01 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.37 8.05 -2.39 -0.02 1.35 16 29 H 0.07 2.08 6.90 -2.39 -0.02 2.07 16 30 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 31 H 0.04 1.49 8.07 -2.39 -0.02 1.47 16 32 H 0.08 3.68 5.33 -2.39 -0.01 3.67 16 33 H 0.38 7.51 7.13 -74.05 -0.53 6.98 16 34 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.16 3.53 7.61 -2.91 -0.02 3.50 16 36 H 0.17 2.82 7.61 -2.91 -0.02 2.80 16 37 H 0.17 2.40 6.61 -2.91 -0.02 2.38 16 Total: -1.00 -60.67 321.17 3.91 -56.76 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.57 Total: 15.31 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.01 Total: -12.54 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.63 Total: -75.50 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.07 Total: -27.69 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.66 kcal Total: -60.67 3.91 -56.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776582886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.957 kcal (2) G-P(sol) polarization free energy of solvation -60.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds