Wall clock time and date at job start Tue Mar 31 2020 02:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.47003 * 2 1 4 4 C 1.35476 * 116.99948 * 180.02562 * 3 2 1 5 5 C 1.39662 * 119.97352 * 179.97438 * 4 3 2 6 6 N 1.31509 * 120.04409 * 180.02562 * 5 4 3 7 7 C 1.33250 * 119.98693 * 359.97438 * 6 5 4 8 8 C 1.47787 * 120.02893 * 179.97438 * 7 6 5 9 9 O 1.21460 * 119.99998 * 180.02562 * 8 7 6 10 10 O 1.34710 * 119.99644 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99810 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47091 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46891 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46946 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99529 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00192 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47123 * 89.99910 * 18 16 14 20 20 H 1.48503 * 109.46827 * 209.99657 * 18 16 14 21 21 H 1.48501 * 109.47006 * 329.99902 * 18 16 14 22 22 C 1.39443 * 119.94430 * 0.25841 * 7 6 5 23 23 N 1.32069 * 119.95407 * 359.47427 * 22 7 6 24 24 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47062 * 300.00031 * 1 2 3 26 26 H 1.09004 * 109.47015 * 59.99800 * 1 2 3 27 27 H 1.08994 * 109.47181 * 240.00251 * 2 1 3 28 28 H 1.08994 * 109.47147 * 119.99649 * 2 1 3 29 29 H 1.07998 * 119.97870 * 0.02562 * 5 4 3 30 30 H 1.09001 * 109.47157 * 299.99606 * 11 10 8 31 31 H 1.09004 * 109.47122 * 59.99740 * 11 10 8 32 32 H 1.08992 * 109.47056 * 300.00206 * 12 11 10 33 33 H 1.09004 * 109.47006 * 60.00090 * 12 11 10 34 34 H 1.09001 * 109.47372 * 300.00036 * 13 12 11 35 35 H 1.08996 * 109.47261 * 60.00575 * 13 12 11 36 36 H 0.96996 * 119.99496 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.02089 * 179.72310 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3494 1.5249 -0.0005 5 6 3.8826 2.8157 -0.0011 6 7 5.1861 2.9896 -0.0021 7 6 5.9989 1.9337 -0.0021 8 6 7.4640 2.1281 -0.0039 9 8 8.2043 1.1652 -0.0043 10 8 7.9781 3.3732 -0.0049 11 6 9.4256 3.4886 -0.0060 12 6 9.8193 4.9671 -0.0078 13 6 11.3444 5.0887 -0.0083 14 6 11.7322 6.5450 -0.0094 15 1 10.9674 7.3075 -0.0093 16 6 13.0635 6.9038 -0.0095 17 7 13.4020 8.1748 -0.0100 18 14 14.3864 5.5850 -0.0090 19 1 14.7370 5.2350 -1.4089 20 1 15.5930 6.0945 0.6908 21 1 13.8809 4.3771 0.6915 22 6 5.4660 0.6451 -0.0065 23 7 4.1566 0.4731 -0.0001 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.2240 3.6716 -0.0007 30 1 9.8293 3.0059 0.8840 31 1 9.8280 3.0048 -0.8961 32 1 9.4157 5.4495 -0.8979 33 1 9.4169 5.4514 0.8820 34 1 11.7477 4.6064 0.8821 35 1 11.7472 4.6045 -0.8979 36 1 14.3385 8.4272 -0.0104 37 1 6.1236 -0.2115 -0.0110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778537197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:07 Heat of formation + Delta-G solvation = -107.000633 kcal Electronic energy + Delta-G solvation = -20332.138346 eV Core-core repulsion = 16881.309625 eV Total energy + Delta-G solvation = -3450.828721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70024 -41.33355 -39.71434 -37.90716 -35.97301 -35.48235 -33.87608 -33.32316 -31.69583 -29.48215 -26.77982 -26.23397 -24.75658 -23.76529 -22.60624 -22.05025 -19.87163 -19.63758 -19.02850 -18.64095 -17.89700 -17.88697 -17.54228 -16.31759 -16.10328 -16.00485 -15.90583 -15.35315 -15.02197 -14.79102 -14.30945 -14.05597 -13.75142 -13.65113 -13.50903 -13.08953 -12.85842 -12.60380 -12.52748 -12.45735 -12.27994 -12.04847 -11.84499 -11.78773 -11.73096 -11.40229 -11.35331 -10.76526 -10.57810 -10.05781 -8.29186 -6.34333 -0.91075 -0.23949 1.15764 1.31281 1.38070 1.39810 1.51668 1.65225 2.36880 2.42979 2.71156 2.83298 3.05821 3.13002 3.59708 3.81042 4.01190 4.01344 4.04602 4.12524 4.35998 4.38511 4.40682 4.55697 4.71930 4.74863 4.92763 4.93950 4.95805 5.19578 5.22727 5.46346 5.49962 5.62716 5.77420 5.80226 6.25786 6.28463 6.56513 6.73549 7.29892 8.87435 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.053903 B = 0.002461 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.322197 B =11374.091068 C =11857.059634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.290 6.290 4 C 0.313 3.687 5 C 0.053 3.947 6 N -0.376 5.376 7 C -0.028 4.028 8 C 0.530 3.470 9 O -0.517 6.517 10 O -0.342 6.342 11 C 0.072 3.928 12 C -0.093 4.093 13 C -0.008 4.008 14 C -0.535 4.535 15 H 0.033 0.967 16 C 0.003 3.997 17 N -0.950 5.950 18 Si 0.952 3.048 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.244 1.244 22 C 0.178 3.822 23 N -0.507 5.507 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.216 0.784 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.267 0.733 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.373 -20.703 0.019 33.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.193 6.193 4 C 0.128 3.872 5 C -0.116 4.116 6 N -0.093 5.093 7 C -0.163 4.163 8 C 0.374 3.626 9 O -0.406 6.406 10 O -0.257 6.257 11 C -0.001 4.001 12 C -0.130 4.130 13 C -0.046 4.046 14 C -0.573 4.573 15 H 0.052 0.948 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.167 1.167 22 C 0.020 3.980 23 N -0.237 5.237 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -26.169 -20.703 0.026 33.368 hybrid contribution 1.038 -0.057 -0.018 1.039 sum -25.132 -20.759 0.008 32.597 Atomic orbital electron populations 1.21860 0.90585 1.04507 1.03705 1.23078 0.96726 0.79159 1.03230 1.86292 1.14613 1.33150 1.85253 1.21559 0.85847 0.91734 0.88070 1.23579 0.90774 0.96328 1.00967 1.68477 1.04207 1.32639 1.03987 1.20758 0.91445 0.92219 1.11834 1.20610 0.88070 0.81489 0.72467 1.90841 1.60762 1.41896 1.47082 1.86650 1.26656 1.29767 1.82664 1.23333 0.74855 0.98764 1.03123 1.21318 0.96711 0.92539 1.02481 1.19449 0.92559 0.95195 0.97390 1.21412 0.92659 0.92444 1.50754 0.94828 1.26043 1.01507 0.97811 0.94018 1.70070 1.18330 1.18245 1.52408 0.85633 0.77775 0.79785 0.79329 1.19029 1.20956 1.16722 1.23699 0.90397 0.96736 0.87212 1.68393 1.04649 1.32547 1.18071 0.88152 0.91307 0.91298 0.90892 0.90899 0.76745 0.90443 0.90372 0.92033 0.92063 0.95387 0.95483 0.92421 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 71.98 0.74 -0.04 16 2 C 0.05 0.51 6.04 71.98 0.43 0.94 16 3 O -0.29 -3.99 10.12 -87.75 -0.89 -4.87 16 4 C 0.31 5.23 7.51 84.92 0.64 5.87 16 5 C 0.05 0.92 11.18 85.09 0.95 1.87 16 6 N -0.38 -9.10 10.27 -183.96 -1.89 -10.99 16 7 C -0.03 -0.68 6.74 41.75 0.28 -0.40 16 8 C 0.53 15.81 7.94 70.35 0.56 16.37 16 9 O -0.52 -16.32 16.12 19.97 0.32 -16.00 16 10 O -0.34 -11.45 10.05 -56.20 -0.56 -12.01 16 11 C 0.07 2.46 5.48 71.98 0.39 2.85 16 12 C -0.09 -3.73 5.53 30.59 0.17 -3.56 16 13 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 14 C -0.53 -31.18 9.66 25.60 0.25 -30.94 16 15 H 0.03 2.16 7.99 -2.91 -0.02 2.13 16 16 C 0.00 0.18 5.47 84.66 0.46 0.64 16 17 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 18 Si 0.95 44.23 27.47 68.60 1.88 46.12 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 22 C 0.18 3.43 10.76 84.95 0.91 4.35 16 23 N -0.51 -9.13 9.37 -307.04 -2.88 -12.00 16 24 H 0.10 0.18 8.14 -2.39 -0.02 0.17 16 25 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 27 H 0.07 0.70 8.11 -2.39 -0.02 0.68 16 28 H 0.07 0.70 8.11 -2.39 -0.02 0.68 16 29 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 35 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 36 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 37 H 0.21 3.16 7.63 -2.91 -0.02 3.13 16 Total: -1.00 -71.17 328.70 3.21 -67.95 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.02 Total: 3.93 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 5.91 Total: -2.31 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -4.47 Total: -82.80 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.13 Total: -32.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -71.17 3.21 -67.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778537197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.046 kcal (2) G-P(sol) polarization free energy of solvation -71.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds