Wall clock time and date at job start Tue Mar 31 2020 01:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 H 1.08999 * 109.47434 * 54.99776 * 3 2 1 5 5 C 1.50692 * 109.47468 * 175.00187 * 3 2 1 6 6 H 1.07998 * 120.00517 * 119.99870 * 5 3 2 7 7 C 1.37882 * 120.00063 * 299.99890 * 5 3 2 8 8 N 1.31514 * 119.99749 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00305 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 60.00037 * 9 7 5 11 11 H 1.48496 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46747 * 299.99931 * 9 7 5 13 13 O 1.45201 * 109.46835 * 295.00026 * 3 2 1 14 14 C 1.34831 * 117.00004 * 90.00103 * 13 3 2 15 15 O 1.21593 * 119.99969 * 359.97438 * 14 13 3 16 16 C 1.46754 * 119.99996 * 179.72343 * 14 13 3 17 17 C 1.41754 * 126.57351 * 359.96063 * 16 14 13 18 18 N 1.30541 * 108.18403 * 179.79587 * 17 16 14 19 19 N 1.39350 * 109.08763 * 0.41239 * 18 17 16 20 20 C 1.35125 * 108.48101 * 359.79088 * 19 18 17 21 21 O 1.35442 * 123.88238 * 179.81872 * 20 19 18 22 22 C 1.43530 * 115.05989 * 344.53322 * 21 20 19 23 23 C 1.53250 * 109.18749 * 46.88074 * 22 21 20 24 24 C 1.46802 * 127.96002 * 179.86892 * 19 18 17 25 25 H 1.08997 * 109.47206 * 299.99915 * 1 2 3 26 26 H 1.08996 * 109.47300 * 60.00217 * 1 2 3 27 27 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46868 * 239.99762 * 2 1 3 29 29 H 1.08996 * 109.47053 * 120.00276 * 2 1 3 30 30 H 0.96998 * 120.00449 * 179.97438 * 8 7 5 31 31 H 1.08000 * 125.91011 * 359.96479 * 17 16 14 32 32 H 1.09007 * 109.51064 * 286.96936 * 22 21 20 33 33 H 1.09003 * 109.56895 * 166.82635 * 22 21 20 34 34 H 1.09003 * 109.51101 * 175.96508 * 23 22 21 35 35 H 1.08998 * 109.51079 * 55.82510 * 23 22 21 36 36 H 1.09004 * 109.75857 * 282.50626 * 24 19 18 37 37 H 1.08990 * 109.76433 * 43.21484 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3818 10 1 6.4995 2.2815 1.3821 11 1 6.3978 0.2167 2.6503 12 1 6.5975 0.1472 0.2348 13 8 1.6559 2.0916 -1.2407 14 6 0.4675 2.7282 -1.2561 15 8 -0.2289 2.7399 -0.2593 16 6 0.0169 3.4118 -2.4740 17 6 0.7147 3.4913 -3.7053 18 7 -0.0139 4.1781 -4.5429 19 7 -1.1878 4.5756 -3.9060 20 6 -1.1674 4.1070 -2.6388 21 8 -2.1589 4.3166 -1.7401 22 6 -3.0858 5.3555 -2.0889 23 6 -3.5144 5.1785 -3.5496 24 6 -2.2935 5.3656 -4.4613 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0619 2.9494 31 1 1.6807 3.0563 -3.9151 32 1 -2.6074 6.3270 -1.9648 33 1 -3.9615 5.2955 -1.4426 34 1 -4.2722 5.9212 -3.7991 35 1 -3.9238 4.1782 -3.6902 36 1 -2.0147 6.4190 -4.4922 37 1 -2.5269 5.0167 -5.4672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797145932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:41 Heat of formation + Delta-G solvation = -46.806129 kcal Electronic energy + Delta-G solvation = -22265.901710 eV Core-core repulsion = 18817.683218 eV Total energy + Delta-G solvation = -3448.218492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88869 -39.10564 -38.56801 -35.53003 -34.77357 -33.31690 -31.29260 -31.03287 -29.69744 -27.16249 -26.57545 -24.26700 -22.99537 -22.28611 -20.74341 -19.86451 -19.38809 -18.06217 -16.98193 -16.68172 -16.24617 -15.76243 -15.29094 -15.10307 -14.95596 -14.68943 -14.36347 -14.31514 -13.32482 -12.89219 -12.79391 -12.68481 -12.10556 -11.92868 -11.72267 -11.48025 -11.31715 -11.20817 -11.05503 -10.84902 -10.72004 -10.52164 -10.18465 -9.64441 -9.40197 -9.26704 -9.18623 -8.65602 -8.39220 -8.30557 -6.07931 -4.14241 1.59159 2.00745 2.33105 2.85827 3.33309 3.36446 3.39173 3.73403 3.92701 4.00920 4.07339 4.41320 4.42631 4.54755 4.81321 4.86071 5.04165 5.11839 5.23886 5.28139 5.32837 5.52499 5.87802 6.20018 6.37692 6.45604 6.54651 6.65207 7.03742 7.12120 7.15248 7.32948 7.43732 7.56298 7.73793 7.88427 8.11709 8.30153 8.82611 9.10308 9.50714 10.98887 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030468 B = 0.004336 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.789030 B = 6455.427411 C = 6882.111149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.353 6.353 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.279 4.279 17 C 0.126 3.874 18 N -0.295 5.295 19 N -0.402 5.402 20 C 0.333 3.667 21 O -0.261 6.261 22 C 0.043 3.957 23 C -0.178 4.178 24 C 0.130 3.870 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.107 0.893 30 H 0.265 0.735 31 H 0.206 0.794 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 9.834 -12.173 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.064 0.936 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.200 1.200 13 O -0.269 6.269 14 C 0.377 3.623 15 O -0.410 6.410 16 C -0.291 4.291 17 C -0.062 4.062 18 N -0.117 5.117 19 N -0.196 5.196 20 C 0.161 3.839 21 O -0.166 6.166 22 C -0.033 4.033 23 C -0.216 4.216 24 C 0.010 3.990 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.789 10.157 -12.620 21.274 hybrid contribution 0.712 -0.216 0.888 1.159 sum -13.076 9.941 -11.732 20.186 Atomic orbital electron populations 1.21849 0.98400 0.98736 1.00928 1.22007 0.92636 0.99468 1.03185 1.20610 0.94745 0.88680 0.78853 0.93568 1.21028 0.89809 1.38691 1.06127 0.91358 1.24873 0.99045 0.94905 0.95130 1.69890 1.35337 1.37964 1.09497 0.86365 0.84153 0.78408 0.77371 1.20056 1.21156 1.19977 1.86516 1.33704 1.62879 1.43828 1.19478 0.80777 0.76285 0.85735 1.90809 1.55709 1.59530 1.34918 1.18498 0.95482 1.17518 0.97635 1.24241 0.99166 0.93915 0.88906 1.77074 0.93405 1.20880 1.20309 1.48933 1.17685 1.44958 1.08041 1.19651 0.89134 0.93568 0.81530 1.86772 1.35856 1.53523 1.40403 1.23240 0.93364 0.90429 0.96241 1.22685 0.97952 1.05830 0.95155 1.21949 0.82568 0.95579 0.98953 0.92864 0.94779 0.95082 0.94032 0.87495 0.92465 0.77724 0.90647 0.85910 0.87019 0.89088 0.89130 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.56 37.16 0.32 -2.98 16 2 C -0.13 -3.48 5.49 -26.73 -0.15 -3.63 16 3 C 0.22 6.16 2.25 -27.89 -0.06 6.09 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.79 8.90 -34.44 -0.31 -15.10 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.57 11.29 55.43 0.63 -24.95 16 9 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 13 O -0.35 -8.79 9.66 -40.85 -0.39 -9.19 16 14 C 0.53 12.36 6.39 34.17 0.22 12.57 16 15 O -0.52 -13.19 13.72 -21.78 -0.30 -13.49 16 16 C -0.28 -5.29 6.13 -105.09 -0.64 -5.94 16 17 C 0.13 2.03 11.88 -16.76 -0.20 1.83 16 18 N -0.30 -4.44 12.54 30.98 0.39 -4.05 16 19 N -0.40 -5.39 4.04 -60.45 -0.24 -5.63 16 20 C 0.33 5.45 7.50 -16.08 -0.12 5.33 16 21 O -0.26 -3.98 10.18 -20.39 -0.21 -4.18 16 22 C 0.04 0.36 7.01 37.29 0.26 0.62 16 23 C -0.18 -1.04 6.17 -26.33 -0.16 -1.20 16 24 C 0.13 1.00 7.41 -3.61 -0.03 0.97 16 25 H 0.05 1.29 7.79 -51.93 -0.40 0.89 16 26 H 0.03 0.78 6.06 -51.93 -0.31 0.47 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.21 2.84 8.06 -52.49 -0.42 2.41 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -34.71 311.53 -6.17 -40.88 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.75 Total: -0.66 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.97 Total: 0.23 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.77 Total: -34.63 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.90 Total: -26.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.71 -6.17 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797145932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.924 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds