Wall clock time and date at job start Tue Mar 31 2020 01:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 H 1.08999 * 109.47434 * 54.99776 * 3 2 1 5 5 C 1.50692 * 109.47468 * 175.00187 * 3 2 1 6 6 H 1.07998 * 120.00517 * 119.99870 * 5 3 2 7 7 C 1.37882 * 120.00063 * 299.99890 * 5 3 2 8 8 N 1.31514 * 119.99749 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00305 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 60.00037 * 9 7 5 11 11 H 1.48496 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46747 * 299.99931 * 9 7 5 13 13 O 1.45201 * 109.46835 * 295.00026 * 3 2 1 14 14 C 1.34831 * 117.00004 * 90.00103 * 13 3 2 15 15 O 1.21593 * 119.99969 * 359.97438 * 14 13 3 16 16 C 1.46754 * 119.99996 * 179.72343 * 14 13 3 17 17 C 1.41754 * 126.57351 * 359.96063 * 16 14 13 18 18 N 1.30541 * 108.18403 * 179.79587 * 17 16 14 19 19 N 1.39350 * 109.08763 * 0.41239 * 18 17 16 20 20 C 1.35125 * 108.48101 * 359.79088 * 19 18 17 21 21 O 1.35442 * 123.88238 * 179.81872 * 20 19 18 22 22 C 1.43530 * 115.05989 * 344.53322 * 21 20 19 23 23 C 1.53250 * 109.18749 * 46.88074 * 22 21 20 24 24 C 1.46802 * 127.96002 * 179.86892 * 19 18 17 25 25 H 1.08997 * 109.47206 * 299.99915 * 1 2 3 26 26 H 1.08996 * 109.47300 * 60.00217 * 1 2 3 27 27 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46868 * 239.99762 * 2 1 3 29 29 H 1.08996 * 109.47053 * 120.00276 * 2 1 3 30 30 H 0.96998 * 120.00449 * 179.97438 * 8 7 5 31 31 H 1.08000 * 125.91011 * 359.96479 * 17 16 14 32 32 H 1.09007 * 109.51064 * 286.96936 * 22 21 20 33 33 H 1.09003 * 109.56895 * 166.82635 * 22 21 20 34 34 H 1.09003 * 109.51101 * 175.96508 * 23 22 21 35 35 H 1.08998 * 109.51079 * 55.82510 * 23 22 21 36 36 H 1.09004 * 109.75857 * 282.50626 * 24 19 18 37 37 H 1.08990 * 109.76433 * 43.21484 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3818 10 1 6.4995 2.2815 1.3821 11 1 6.3978 0.2167 2.6503 12 1 6.5975 0.1472 0.2348 13 8 1.6559 2.0916 -1.2407 14 6 0.4675 2.7282 -1.2561 15 8 -0.2289 2.7399 -0.2593 16 6 0.0169 3.4118 -2.4740 17 6 0.7147 3.4913 -3.7053 18 7 -0.0139 4.1781 -4.5429 19 7 -1.1878 4.5756 -3.9060 20 6 -1.1674 4.1070 -2.6388 21 8 -2.1589 4.3166 -1.7401 22 6 -3.0858 5.3555 -2.0889 23 6 -3.5144 5.1785 -3.5496 24 6 -2.2935 5.3656 -4.4613 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0619 2.9494 31 1 1.6807 3.0563 -3.9151 32 1 -2.6074 6.3270 -1.9648 33 1 -3.9615 5.2955 -1.4426 34 1 -4.2722 5.9212 -3.7991 35 1 -3.9238 4.1782 -3.6902 36 1 -2.0147 6.4190 -4.4922 37 1 -2.5269 5.0167 -5.4672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797145932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:41 Heat of formation + Delta-G solvation = -70.712966 kcal Electronic energy + Delta-G solvation = -22266.938388 eV Core-core repulsion = 18817.683218 eV Total energy + Delta-G solvation = -3449.255170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.01594 -40.90257 -39.69726 -37.42208 -35.68847 -35.38106 -33.31670 -32.01266 -31.01998 -29.22038 -27.39066 -25.73783 -24.73390 -23.56202 -22.33002 -21.25425 -20.77068 -19.42806 -18.56505 -18.35710 -17.51556 -17.30171 -16.85469 -16.52971 -16.14995 -15.88042 -15.83201 -15.24419 -14.83047 -14.71381 -14.39613 -13.91074 -13.42784 -13.34453 -13.27023 -13.06170 -12.74372 -12.71340 -12.60854 -12.47436 -12.17492 -12.10244 -11.87868 -11.70440 -11.38025 -11.14113 -10.75142 -10.46974 -10.32541 -9.66769 -8.21717 -6.38307 0.31557 0.97678 0.99997 1.44983 1.49236 1.57027 1.92803 2.17750 2.27806 2.49789 3.07473 3.16887 3.48834 3.69447 3.85552 3.95678 4.09983 4.24686 4.32188 4.41410 4.43983 4.50642 4.52081 4.56655 4.69486 4.88696 4.90818 5.04919 5.12375 5.27866 5.33351 5.46286 5.57476 5.72946 6.03718 6.09310 6.20958 6.36862 6.67636 7.15067 7.34849 8.85249 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030468 B = 0.004336 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.789030 B = 6455.427411 C = 6882.111149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.982 3.018 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.263 1.263 13 O -0.357 6.357 14 C 0.529 3.471 15 O -0.553 6.553 16 C -0.326 4.326 17 C 0.128 3.872 18 N -0.293 5.293 19 N -0.387 5.387 20 C 0.344 3.656 21 O -0.293 6.293 22 C 0.025 3.975 23 C -0.164 4.164 24 C 0.113 3.887 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.270 0.730 31 H 0.219 0.781 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.139 10.978 -14.047 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.188 1.188 13 O -0.274 6.274 14 C 0.377 3.623 15 O -0.446 6.446 16 C -0.339 4.339 17 C -0.061 4.061 18 N -0.115 5.115 19 N -0.182 5.182 20 C 0.169 3.831 21 O -0.197 6.197 22 C -0.048 4.048 23 C -0.202 4.202 24 C -0.005 4.005 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.106 0.894 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.619 11.331 -14.534 23.523 hybrid contribution 0.755 -0.430 1.435 1.678 sum -13.864 10.901 -13.098 21.968 Atomic orbital electron populations 1.21683 0.96586 1.00307 0.99880 1.21858 0.94201 0.98214 1.02343 1.20341 0.94519 0.89158 0.78590 0.97907 1.21319 0.90397 1.39899 1.06986 0.91404 1.25814 1.04260 0.93882 0.94301 1.70020 1.37500 1.37989 1.09876 0.85250 0.77641 0.78725 0.77874 1.19458 1.20276 1.18754 1.86499 1.35124 1.63411 1.42356 1.20142 0.79650 0.75652 0.86906 1.90770 1.56307 1.60982 1.36543 1.18389 0.98112 1.20263 0.97099 1.24382 0.99732 0.94067 0.87904 1.77021 0.93967 1.20397 1.20091 1.49401 1.17979 1.43964 1.06847 1.19565 0.88545 0.92337 0.82680 1.86748 1.36335 1.55511 1.41140 1.23795 0.92947 0.89208 0.98893 1.22713 0.97918 1.07066 0.92541 1.22625 0.81424 0.96230 1.00184 0.94735 0.94959 0.92015 0.93457 0.89445 0.92101 0.76503 0.89441 0.83592 0.82234 0.89737 0.86596 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.08 8.56 71.98 0.62 -5.47 16 2 C -0.13 -6.84 5.49 30.59 0.17 -6.67 16 3 C 0.23 13.13 2.25 29.84 0.07 13.20 16 4 H 0.00 0.20 7.16 -2.39 -0.02 0.19 16 5 C -0.55 -32.26 8.90 25.60 0.23 -32.03 16 6 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.92 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 O -0.36 -18.68 9.66 -57.43 -0.55 -19.24 16 14 C 0.53 25.78 6.39 70.05 0.45 26.23 16 15 O -0.55 -29.75 13.72 21.87 0.30 -29.45 16 16 C -0.33 -12.69 6.13 -20.17 -0.12 -12.82 16 17 C 0.13 4.11 11.88 85.75 1.02 5.13 16 18 N -0.29 -8.42 12.54 -55.91 -0.70 -9.12 16 19 N -0.39 -9.63 4.04 -456.65 -1.84 -11.48 16 20 C 0.34 11.14 7.50 84.20 0.63 11.77 16 21 O -0.29 -8.81 10.18 -85.11 -0.87 -9.68 16 22 C 0.03 0.36 7.01 72.07 0.51 0.87 16 23 C -0.16 -1.27 6.17 30.85 0.19 -1.08 16 24 C 0.11 1.31 7.41 86.50 0.64 1.95 16 25 H 0.03 1.74 7.79 -2.39 -0.02 1.72 16 26 H 0.03 1.52 6.06 -2.39 -0.01 1.50 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.09 5.02 5.95 -2.39 -0.01 5.00 16 30 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.22 6.08 8.06 -2.91 -0.02 6.05 16 32 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.16 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -79.48 311.53 4.52 -74.95 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.08 Total: 9.26 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 4.84 Total: 2.49 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -2.30 Total: -74.29 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.12 Total: -58.37 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -79.48 4.52 -74.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797145932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.239 kcal (2) G-P(sol) polarization free energy of solvation -79.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds