Wall clock time and date at job start Tue Mar 31 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47156 * 2 1 4 4 C 1.46498 * 120.00011 * 269.99952 * 3 2 1 5 5 C 1.50700 * 109.47157 * 270.00259 * 4 3 2 6 6 H 1.08004 * 120.00027 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99947 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47259 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47475 * 119.99779 * 9 7 5 12 12 H 1.48503 * 109.47378 * 239.99530 * 9 7 5 13 13 C 1.34776 * 119.99915 * 89.99893 * 3 2 1 14 14 O 1.21274 * 120.00303 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99881 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47047 * 180.02562 * 15 13 3 17 17 C 1.34889 * 117.00076 * 180.02562 * 16 15 13 18 18 O 1.21624 * 119.99915 * 359.71464 * 17 16 15 19 19 C 1.46496 * 120.00125 * 179.97438 * 17 16 15 20 20 C 1.37990 * 126.26242 * 179.41437 * 19 17 16 21 21 C 1.39805 * 106.96681 * 179.84786 * 20 19 17 22 22 C 1.35486 * 107.84065 * 0.41379 * 21 20 19 23 23 N 1.34958 * 108.98705 * 359.73875 * 22 21 20 24 24 H 0.96995 * 125.63726 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.47026 * 300.00055 * 1 2 3 26 26 H 1.08995 * 109.46711 * 59.99917 * 1 2 3 27 27 H 1.09000 * 109.46780 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47026 * 239.99945 * 2 1 3 29 29 H 1.09000 * 109.47150 * 120.00246 * 2 1 3 30 30 H 1.09000 * 109.46829 * 30.00337 * 4 3 2 31 31 H 1.08995 * 109.47227 * 150.00037 * 4 3 2 32 32 H 0.97006 * 119.99767 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47238 * 59.99750 * 15 13 3 34 34 H 1.09001 * 109.46856 * 299.99696 * 15 13 3 35 35 H 1.07998 * 126.51665 * 359.95497 * 20 19 17 36 36 H 1.07993 * 126.08009 * 180.12259 * 21 20 19 37 37 H 1.08000 * 125.50990 * 179.74242 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7038 6 1 4.3430 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8774 8 7 3.3495 3.1265 -3.6175 9 14 5.9138 2.0974 -3.4163 10 1 6.6015 1.2421 -2.4158 11 1 5.9219 1.4188 -4.7372 12 1 6.6211 3.3987 -3.5241 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3062 2.1957 3.5760 17 6 2.1352 1.7093 4.8225 18 8 1.7296 0.5738 4.9818 19 6 2.4325 2.5507 5.9843 20 6 2.2942 2.1910 7.3093 21 6 2.6916 3.2916 8.0744 22 6 3.0478 4.2827 7.2221 23 7 2.8957 3.8471 5.9538 24 1 3.0821 4.3620 5.1532 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 3.6756 3.5170 -4.4434 33 1 2.6228 0.4186 2.5299 34 1 0.9445 1.0114 2.5302 35 1 1.9468 1.2396 7.6840 36 1 2.7070 3.3442 9.1529 37 1 3.3971 5.2630 7.5109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797857624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:10 Heat of formation + Delta-G solvation = -95.654980 kcal Electronic energy + Delta-G solvation = -21380.867085 eV Core-core repulsion = 17930.530348 eV Total energy + Delta-G solvation = -3450.336737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37955 -41.33565 -40.39479 -37.62631 -37.00334 -34.96210 -32.11734 -31.79635 -31.19277 -30.12726 -28.35395 -25.17275 -24.48193 -23.88533 -21.75362 -21.16243 -20.42649 -19.93891 -18.67134 -18.33228 -17.90986 -17.77181 -17.17806 -16.45512 -16.25931 -15.81820 -15.19211 -14.87751 -14.74065 -14.63462 -14.49584 -13.91933 -13.89416 -13.65180 -13.61090 -13.31070 -13.26036 -13.08608 -12.71380 -12.53610 -12.26045 -12.09968 -11.98224 -11.83493 -11.71678 -10.78257 -10.67124 -10.04731 -9.57964 -9.35313 -8.25510 -6.40075 0.13559 1.15888 1.35761 1.37842 1.49416 1.56802 1.71300 2.07874 2.16556 2.32741 2.44819 3.04705 3.38047 3.66530 3.91976 3.93470 4.12880 4.27590 4.35346 4.35828 4.42487 4.56951 4.85129 4.92371 5.00495 5.02875 5.08449 5.17640 5.25539 5.34227 5.51655 5.68239 5.76913 5.88161 6.01632 6.43932 6.49850 6.60462 6.69188 7.16934 7.33522 8.82152 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.003832 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.684973 B = 7304.487188 C = 8123.126888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.578 6.578 15 C 0.064 3.936 16 O -0.352 6.352 17 C 0.535 3.465 18 O -0.524 6.524 19 C -0.087 4.087 20 C -0.096 4.096 21 C -0.226 4.226 22 C 0.056 3.944 23 N -0.527 5.527 24 H 0.430 0.570 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.030 0.970 31 H 0.000 1.000 32 H 0.268 0.732 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -3.238 20.180 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.288 3.712 14 O -0.458 6.458 15 C -0.012 4.012 16 O -0.268 6.268 17 C 0.382 3.618 18 O -0.415 6.415 19 C -0.197 4.197 20 C -0.123 4.123 21 C -0.248 4.248 22 C -0.083 4.083 23 N -0.121 5.121 24 H 0.269 0.731 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.322 -2.861 19.807 20.286 hybrid contribution 0.779 0.221 -1.309 1.539 sum -2.544 -2.639 18.498 18.858 Atomic orbital electron populations 1.22178 0.94278 1.03844 1.01832 1.21883 0.95600 0.80955 1.04457 1.48203 1.63467 1.15263 1.05659 1.18798 0.95615 0.91666 0.79692 1.21733 0.97799 1.32202 1.06680 0.92767 1.25840 1.02403 0.94394 0.96372 1.70052 1.37691 1.34077 1.14811 0.85359 0.78953 0.78020 0.78413 1.19207 1.19354 1.20725 1.20483 0.78358 0.86641 0.85758 1.90659 1.47225 1.20109 1.87759 1.22838 1.04806 0.91965 0.81619 1.86604 1.79663 1.45565 1.14968 1.20248 0.74187 0.85390 0.81955 1.90856 1.44753 1.19343 1.86512 1.19308 1.20004 0.88025 0.92337 1.21660 1.00533 1.00910 0.89201 1.21308 1.09483 0.92952 1.01106 1.22854 1.01799 1.01958 0.81675 1.42158 1.48894 1.10969 1.10124 0.73066 0.92476 0.93628 0.88333 0.89890 0.88434 0.95204 0.98174 0.92321 0.86441 0.85991 0.82745 0.80759 0.76771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.29 16 2 C 0.09 2.80 5.93 86.38 0.51 3.31 16 3 N -0.59 -25.11 2.46 -826.15 -2.03 -27.14 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.55 -31.29 9.39 25.60 0.24 -31.05 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -55.60 13.29 21.44 0.28 -55.32 16 9 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.50 21.41 7.75 87.66 0.68 22.09 16 14 O -0.58 -30.55 16.08 15.79 0.25 -30.30 16 15 C 0.06 2.06 4.51 71.24 0.32 2.38 16 16 O -0.35 -11.87 9.77 -51.64 -0.50 -12.37 16 17 C 0.53 16.27 7.93 69.97 0.55 16.83 16 18 O -0.52 -17.10 16.68 19.43 0.32 -16.77 16 19 C -0.09 -2.18 7.10 40.32 0.29 -1.89 16 20 C -0.10 -2.01 10.66 22.59 0.24 -1.76 16 21 C -0.23 -3.33 10.81 22.01 0.24 -3.09 16 22 C 0.06 0.75 11.87 83.58 0.99 1.74 16 23 N -0.53 -10.39 6.07 -184.05 -1.12 -11.50 16 24 H 0.43 8.08 8.96 -92.71 -0.83 7.25 16 25 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 29 H 0.10 2.32 6.44 -2.39 -0.02 2.31 16 30 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 31 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 32 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 33 H 0.12 3.28 7.40 -2.39 -0.02 3.26 16 34 H 0.12 3.26 7.18 -2.39 -0.02 3.25 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -78.39 329.36 5.21 -73.18 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.26 Total: 12.75 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 5.71 Total: 20.77 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -2.86 Total: -93.97 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: 0.07 Total: -59.45 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.39 5.21 -73.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797857624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.471 kcal (2) G-P(sol) polarization free energy of solvation -78.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds