Wall clock time and date at job start Tue Mar 31 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47196 * 2 1 4 4 C 1.50701 * 109.46746 * 239.99830 * 2 1 3 5 5 H 1.08004 * 119.99742 * 239.99953 * 4 2 1 6 6 C 1.37871 * 119.99970 * 60.00469 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99723 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47411 * 59.99670 * 8 6 4 10 10 H 1.48500 * 109.46979 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46794 * 299.99357 * 8 6 4 12 12 C 1.53005 * 109.46832 * 119.99879 * 2 1 3 13 13 O 1.45197 * 109.46975 * 300.00096 * 12 2 1 14 14 C 1.34733 * 116.99351 * 180.02562 * 13 12 2 15 15 O 1.21488 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.47598 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.40988 * 125.98312 * 180.02562 * 16 14 13 18 18 C 1.36151 * 107.95431 * 180.28697 * 17 16 14 19 19 N 1.35814 * 107.32012 * 359.32853 * 18 17 16 20 20 N 1.31888 * 125.97907 * 359.97438 * 16 14 13 21 21 C 1.47768 * 108.14393 * 181.21051 * 19 18 17 22 22 C 1.54649 * 102.19756 * 14.97373 * 21 19 18 23 23 O 1.36119 * 140.87708 * 179.33510 * 18 17 16 24 24 H 1.09003 * 109.47139 * 300.00151 * 1 2 3 25 25 H 1.08999 * 109.47596 * 60.00058 * 1 2 3 26 26 H 1.08997 * 109.47865 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47226 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47330 * 299.99880 * 3 2 1 29 29 H 1.09003 * 109.47200 * 59.99887 * 3 2 1 30 30 H 0.96998 * 119.99792 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46865 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.47241 * 60.00055 * 12 2 1 33 33 H 1.08001 * 126.02402 * 0.28347 * 17 16 14 34 34 H 1.09004 * 110.78000 * 256.87048 * 21 19 18 35 35 H 1.08994 * 111.02309 * 133.19512 * 21 19 18 36 36 H 1.09002 * 110.85298 * 217.12214 * 22 21 19 37 37 H 1.09001 * 110.84909 * 93.69801 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0399 -0.7213 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9183 -0.5485 3.6273 15 8 2.6192 -1.5397 3.6753 16 6 1.4639 0.0952 4.8754 17 6 1.7664 -0.3308 6.1848 18 6 1.1565 0.5208 7.0546 19 7 0.5072 1.4571 6.3155 20 7 0.7045 1.1701 4.9608 21 6 -0.1379 2.4094 7.2431 22 6 0.5672 2.0901 8.5820 23 8 0.9938 0.7287 8.3900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 2.3746 -1.1826 6.4511 34 1 -1.2084 2.2161 7.3132 35 1 0.0521 3.4393 6.9410 36 1 -0.1312 2.1640 9.4156 37 1 1.4233 2.7469 8.7359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810675260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:48 Heat of formation + Delta-G solvation = -16.290361 kcal Electronic energy + Delta-G solvation = -21619.052250 eV Core-core repulsion = 18172.157021 eV Total energy + Delta-G solvation = -3446.895229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50788 -39.91941 -38.63303 -36.51403 -34.80553 -33.55777 -31.26350 -30.28352 -29.11695 -26.20756 -25.54772 -25.21599 -24.35701 -22.96532 -21.62957 -20.13424 -18.80794 -18.04912 -17.36357 -16.62028 -16.13499 -15.89602 -15.81611 -15.37505 -15.27514 -14.62448 -14.47953 -13.87634 -13.15804 -13.08114 -12.93357 -12.80803 -12.65033 -11.80677 -11.67550 -11.40435 -11.16733 -11.04486 -10.91496 -10.70313 -10.42876 -10.35170 -10.11299 -9.85642 -9.46537 -9.34174 -9.28443 -8.74632 -8.71183 -8.33020 -5.97509 -4.09346 1.14223 1.57271 1.86313 2.42389 3.20623 3.29861 3.32760 3.36935 3.40914 3.58217 4.14797 4.26290 4.41935 4.58408 4.71898 4.83739 5.01506 5.28661 5.28668 5.35968 5.66259 6.07874 6.14055 6.17074 6.50943 6.59024 6.76839 7.01319 7.04847 7.22022 7.23784 7.26282 7.45895 7.68438 7.74282 8.10780 8.15449 8.25399 8.43608 8.90399 9.55894 11.03636 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043132 B = 0.003418 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.010251 B = 8189.256392 C = 8629.581515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.082 3.918 13 O -0.329 6.329 14 C 0.545 3.455 15 O -0.498 6.498 16 C 0.073 3.927 17 C -0.211 4.211 18 C 0.230 3.770 19 N -0.414 5.414 20 N -0.182 5.182 21 C 0.098 3.902 22 C 0.041 3.959 23 O -0.278 6.278 24 H 0.018 0.982 25 H 0.084 0.916 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.084 0.916 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 4.738 21.361 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 C -0.188 4.188 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.010 3.990 13 O -0.244 6.244 14 C 0.385 3.615 15 O -0.384 6.384 16 C -0.092 4.092 17 C -0.240 4.240 18 C 0.063 3.937 19 N -0.212 5.212 20 N -0.012 5.012 21 C -0.022 4.022 22 C -0.035 4.035 23 O -0.185 6.185 24 H 0.037 0.963 25 H 0.102 0.898 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.102 0.898 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.186 0.814 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.960 5.410 20.682 21.582 hybrid contribution 0.698 -0.958 -0.322 1.229 sum -2.262 4.452 20.360 20.963 Atomic orbital electron populations 1.21773 0.97255 0.98969 1.00780 1.18245 0.93505 0.93112 0.88066 1.21771 0.98049 0.98169 1.00778 1.20906 1.32050 1.12328 0.89787 0.92464 1.24851 0.94805 0.94909 0.98751 1.69828 1.36251 1.22579 1.23357 0.86598 0.79212 0.79749 0.82077 1.20236 1.21260 1.20243 1.23823 0.98460 0.95979 0.80746 1.86676 1.68397 1.55163 1.14115 1.19433 0.77451 0.81276 0.83312 1.90843 1.35234 1.24524 1.87847 1.20951 1.00183 0.95524 0.92554 1.19980 1.10604 1.06089 0.87351 1.20670 0.96731 0.94593 0.81747 1.50950 1.41521 1.24189 1.04565 1.78056 1.18476 1.15788 0.88890 1.23337 0.99057 0.94607 0.85224 1.24459 1.00273 0.81313 0.97468 1.87139 1.84661 1.29611 1.17127 0.96285 0.89764 0.95827 0.95831 0.89767 0.96285 0.92877 0.92118 0.92120 0.81433 0.87469 0.86668 0.85167 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.11 37.16 0.30 -2.94 16 2 C 0.07 1.79 0.58 -155.66 -0.09 1.70 16 3 C -0.13 -3.24 8.11 37.15 0.30 -2.93 16 4 C -0.51 -13.90 8.01 -34.44 -0.28 -14.17 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 7 N -0.88 -24.33 9.35 55.43 0.52 -23.81 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.08 1.88 4.27 37.16 0.16 2.04 16 13 O -0.33 -7.11 8.88 -40.58 -0.36 -7.47 16 14 C 0.54 10.73 7.97 34.55 0.28 11.00 16 15 O -0.50 -10.38 16.69 -19.26 -0.32 -10.70 16 16 C 0.07 1.26 7.11 -82.98 -0.59 0.67 16 17 C -0.21 -3.04 10.60 -39.29 -0.42 -3.45 16 18 C 0.23 2.87 8.32 -16.54 -0.14 2.74 16 19 N -0.41 -5.21 5.02 -59.40 -0.30 -5.51 16 20 N -0.18 -3.04 12.74 33.30 0.42 -2.62 16 21 C 0.10 0.61 8.13 -2.48 -0.02 0.59 16 22 C 0.04 0.18 8.07 38.02 0.31 0.49 16 23 O -0.28 -2.66 11.19 -20.12 -0.23 -2.88 16 24 H 0.02 0.43 7.68 -51.93 -0.40 0.04 16 25 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 29 H 0.02 0.43 7.68 -51.93 -0.40 0.04 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.13 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 315.88 15.07 4.76 4.76 Total: -1.00 -32.34 315.88 -5.58 -37.92 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.77 Total: -3.19 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.28 Total: -2.51 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.64 Total: -31.94 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.91 Total: -21.06 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.34 -5.58 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810675260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.630 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds